Bacterial diversity and functional interactions between bacterial strains from a phenanthrene-degrading consortium obtained from a chronically contaminated-soil

International Biodeterioration and Biodegradation

Volumn 85, Issue , 2013, Pages 42-51

  Festa, Sabrina ^a   Coppotelli, Bibiana M ^a   Morelli, Irma S ^a,b  

^a Universidad Nacional de La Plata   (Argentina)

^b Centro Científico y Tecnológico Consejo Nacional de Investigaciones Científicas y Técnicas   (Argentina)

Author keywords

Bacterial consortium; DGGE; Phenanthrene degradation; Sphingomonadaceae

Indexed keywords

1-HYDROXY-2-NAPHTHOIC ACID; BACTERIAL CONSORTIUM; BACTERIAL DIVERSITY; CONTAMINATED SOILS; DGGE; FUNCTIONAL INTERACTION; POLYMERASE CHAIN REACTION-DENATURING GRADIENT GEL ELECTROPHORESIS; SPHINGOMONADACEAE;

BACTERIA; BIODEGRADATION; ELECTROPHORESIS; SOIL POLLUTION;

ANTHRACENE;

BACTERIUM; BIODEGRADATION; COMMUNITY DYNAMICS; ELECTROKINESIS; PHENANTHRENE; POLYMERASE CHAIN REACTION; SOIL POLLUTION; SPECIES DIVERSITY;

EID: 84880383661     PISSN: 09648305     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ibiod.2013.06.006     Document Type: Article

References (47)

1. Aitken M.D., Stringfellow W.T., Nagel R.D., Kazunga C., Chen S.H. Characteristics of phenanthrene-degrading bacteria isolated from soils contaminated with polycylic aromatic hydrocarbons. Canadian Journal of Microbiology 1998, 44:743-752.
2. Bouchez M., Blanchet D., Bardin V., Haeseler F., Vandecasteele P. Efficiency of defined strains and of soil consortia in the biodegradation of polycyclic aromatic hydrocarbon (PAH) mixtures. Biodegradation 1999, 10:429-435.
3. Budzinski H., Raymond N., Nadalig T., Gilewicz M., Garrigues P., Bertr J., Caumette P. Aerobic biodegradation of alkylated aromatic hydrocarbons by a bacterial community. Organic Geochemistry 1998, 28:337-348.
4. Cai Q.Y., Mo C.H., Li Y.H., Zeng Q.Y., Katsoyiannis A., Wu Q.T., Férard J.F. Occurrence and assessment of polycyclic aromatic hydrocarbons in soils from vegetable fields of the Pearl River Delta, South China. Chemospere 2007, 68:159-168.
5. Cébron A., Norini M.P., Beguiristain T., Leyval C. Real-Time PCR quantification of PAH-ring hydroxylating dioxygenase (PAH-RHDα) genes from Gram positive and Gram negative bacteria in soil and sediment samples. Journal of Microbiological Methods 2008, 73:148-159.
6. Coppotelli B., Ibarrolaza A., Diaz R., Del Panno M., Berthe-Cortie L., Morelli I. Study of the degradation activity and the strategies to promote the bioavailability of phenanthrene by Sphingomonas paucimobilis Strain 20006FA. Microbial Ecology 2010, 55:173-183.
7. Das P., Mukherjee S., Sen R. Improved bioavailability and biodegradation of a model polyaromatic hydrocarbon by a biosurfactant producing bacterium of marine origin. Chemospere 2008, 72:1229-1234.
8. De Araujo J.C., Schneider R.P. DGGE with genomic DNA: suitable for detection of numerically important organisms but not for identification of the most abundant organisms. Water Research 2008, 42:5002-5010.
9. Dejonghe W., Berteloot E., Goris J., Boon N., Crul K., Maertens S., Höfte S., De Vos P., Verstraete W., Top E.M. Synergistic degradation of linuron by a bacterial consortium and isolation of a single linuron-degrading Variovorax strain. Applied and Environmental Microbiology 2003, 69:1532-1541.
10. Edgehill R.U. Bioremediation by inoculation with microorganisms. Bioremediation of contaminated soils. ASA/CSSA/SSSA, Madison 1999, 290-314. D.C. Adriano, J.M. Bollag, W.T. Frnakenberger, R.C. Sims (Eds.).
11. Farrelly V., Rainey F.A., Stackebrandt E. Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial species. Applied and Environmental Microbiology 1995, 61:2798-2801.
12. Fazzini R.A.B., Preto M.J., Quintas A.C.P., Bielecka A., Timmis K.N., Martins dos Santos V.A.P. Consortia modulation of the stress response: proteomic analysis of single strain versus mixed culture. Environmental Microbiology 2010, 12(9):2436-2449.
13. Fernández-Luqueño F., Valenzuela-Encinas C., Marsch R., Martínez-Suárez C., Vázquez Núñez E., Dendooven L. Microbial communities to mitigate contamination of PAHs in soil possibilities and challenges: a review. Environmental Science & Pollution Research 2011, 18:12-30.
14. Ghosal D., Chakraborty J., Khara P., Dutta T.K. Degradation of phenanthrene via meta-cleavage of 2-hydroxy-1-naphthoic acid by Ochrobactrum sp. strain PWTJD. FEMS Microbiology Letters 2010, 313:103-110.
15. Gerhard P., Murray R., Costilow R., Nester E., Krieg N., Phillips G. Manual of Methods for General Bacteriology 1981, American Society of Microbiology Journals, Washington, DC.
16. Grifoll M., Selifonov S.A., Gatlin C.V., Chapman P.J. Actions of a versatile fluorene-degrading bacterial isolate on polycyclic aromatic compounds. Applied and Environmental Microbiology 1995, 61:3711-3723.
17. Hansen M.C., Tolker-Nielsen T., Givskov M., Molin S. Biased 16S rDNA PCR amplification caused by interference from DNA flanking the template region. FEMS Microbiology Ecology 1998, 26:141-149.
18. Hua X., Wu Z., Zhang H., Lu D., Wang M., Liu Y., Liu Z. Degradation of hexadecane by Enterobacter cloacae strain TU that secretes an exopolysaccharide as a bioemulsifier. Chemospere 2010, 80:951-956.
19. Janbandhu A.I., Fulekar M.H. Biodegradation of phenanthrene using adapted microbial consortium isolated from petrochemical contaminated environment. Journal of Hazardous Materials 2011, 187:333-340.
20. Jung H.M., Lee J.S., Bae H.M., Yi T.H., Kim S.Y., Lee S.T., Im W.T. Inquilinus ginsengisoli sp. nov., isolated from soil of a ginseng field. International Journal of Systematic and Evolutionary Microbiology 2011, 61(1):201-204.
21. Jurelevicius D., Marques Alvarez V., Peixoto R., Soares Rosado A., Seldin L. Bacterial polycyclic aromatic hydrocarbon ring-hydroxylating dioxygenases (PAH-RHD) encoding genes in different soils from King George Bay, Antarctic Penínsul. Applied Soil Ecology 2012, 55:1-9.
22. Kanzuga C., Aitken M. Products from the incomplete metabolism of pyrene by polycyclic aromatic hydrocarbon degrading bacteria. Applied and Environmental Microbiology 2000, 66:1917-1922.
23. Leahy J.G., Colwell R.R. Microbial degradation of hydrocarbons in the environment. Microbiological Reviews 1990, 54:305-315.
24. Molina M., González N., Bautista L., Sanz R., Simarro R., Sánchez I., Sanz J. Isolation and genetic identification of PAH degrading bacteria from a microbial consortium. Biodegradation 2009, 20:789-800.
25. Muyzer G., Brinkahoff T., Nübel U., Santegoedes C., Schäfer H., Wawer C. Denaturing gradient electrophoresis (DGGE) in microbial ecology. Molecular Microbial Ecology Manual 1998, 1-27. Kluwer Academic Press, Dordretch. A. Akkermanns, J. Van Elsas, F. deBrujin (Eds.).
26. Peng R.H., Xiong A.S., Xue Y., Fu X.Y., Gao F., Zhao W., Tian Y.S., Yao Q.H. Microbial biodegradation of polyaromatic hydrocarbons. FEMS Microbiology Reviews 2008, 32:927-955.
27. Puglisi E., Cappa F., Fragoulis G., Trevisan M., Del Re A.A.M. Bioavailability and degradation of phenanthrene in compost amended soil. Chemospere 2007, 67:548-556.
28. Reasoner D., Geldreich E. Anew medium for the enumeration and subculture of bacteria from potable water. Applied and Environmental Microbiology 1985, 49:1-7.
29. Sabaté J., Viñas M., Solanas A.M. Laboratory-scale bioremediation experiments on hydrocarbon-contaminated soils. International Biodeterioration & Biodegradation 2004, 54:19-25.
30. Sambrook J., Fritsch E., Maniatis T. Molecular Cloning: a Laboratory Manual 1989, Cold Spring Harbour Laboratory Press, Cold Spring Harbor, N.Y. second ed.
31. Sahoo N.K., Ramesh A., Pakshirajan K. Bacterial degradation of aromatic xenobiotic compounds: an overview on metabolic pathways and molecular approaches. Microorganisms in Environmental Management 2012, 201-220.
32. Shim H., Hwang B., Lee S., Kong S. Kinetics of BTEX biodegradation by a coculture of Pseudomonas putida and Pseudomonas fluorescens under hypoxic conditions. Biodegradation 2005, 16:319-327.
33. Sinha S., Chattopadhyay P., Sen S.K. Microbial degradation of recalcitrant PAHs-microbial diversity involving remediation process. Microbial Degradation of Xenobiotics. 2012, 395-410. Springer, Berlin, http://dx.doi.org/10.1007/978-3. S.N. Singh (Ed.).
34. Sipos R., Marialigeti K., Palatinszky M., Szekely A.J., Nikolausz M. Testing the week points of "universal" 16SrDNA primers in multitemplate PCR of environmental samples and model communities. 10th International Symposium on Microbial Ecology ISME-10 Microbial Planet: Subsurface to Space 2004, 263.
35. Sorensen S., Ronen Z., Aamand J. Growth in coculture stimulates metabolism of the phenylurea herbicide isoproturon by Sphingomonas sp. Strain SRS2. Applied and Environmental Microbiology 2002, 68:3478-3485.
36. Sugiura K., Ishihara M., Shimauchi T., Harayama S. Physichochemical properties and biodegradability of crude oil. Environmental Science and Technology 1997, 31:45-51.
37. Tamura K., Dudley J., Nei M., Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Molecular biology and evolution 2007, 24:1596-1599.
38. Tao X.Q., Lee G.N., Dang Z., Yang C., Yi X.Y. Aphenanthrene degrading strain Sphingomonas sp. GY2B isolated from contaminated soils. Process Biochemistry 2007, 2007(42):401-408.
39. Toledo F.L., Calvo C., Rodelas B., González-López J. Selection and identification of bacteria isolated from waste crude oil with polycyclic aromatic hydrocarbons removal capacities. Systematic and Applied Microbiology 2006, 29:244-252.
40. Tuan N.N., Hsieh H.C., Lin Y.W., Huang S.L. Analysis of bacterial degradation pathways for long-chain alkylphenols involving phenol hydroxylase, alkylphenol monooxygenase and catechol dioxygenase genes. Bioresource Technology 2011, 102:4232-4240.
41. Venkateswaran K., Hoaki K., Maruyama T. Microbial degradation of resins fractionated from Arabian light crude oil. Canadian Journal of Microbiology 1995, 41:418-424.
42. Viñas M., Sabaté J., Guasp C., Lalucat J., Solanas A.M. Culture-dependent and -independent approaches establish the complexity of a PAH-degrading microbial consortium. Canadian Journal of Microbiology 2005, 51:897-909.
43. Wang B., Lai Q., Cui Z., Tan T., Shao Z. Apyrene-degrading consortium from deep-sea sediment of the West Pacific and its key member Cycloclasticus sp. P1. Environmental Microbiology 2008, 10:1948-1963.
44. Wrenn B.A., Venosa A.D. Selective enumeration of aromatic and aliphatic hydrocarbon-degrading bacteria by a most probable number procedure. Canadian Journal of Microbiology 1996, 42:252-258.
45. Xiao J., Guo L., Wang S., Lu Y. Comparative impact of cadmium on two phenanthrene-degrading bacteria isolated from cadmium and phenanthrene co-contaminated soil in China. Journal of Hazardous Materials 2010, 174:818-823.
46. Yuan S.Y., Su L.M., Chang B.V. Biodegradation of phenanthrene and pyrene in compost-amended soil. Journal of Environmental Science and Health. Part A, Toxic/hazardous Substances & Environmental Engineering 2009, 44:648-653.
47. Zocca C., Di Gregorio S., Visentini F., Vallini G. Biodiversity amongst cultivable polycyclic aromatic hydrocarbon-transforming bacteria isolated from an abandoned industrial site. FEMS Microbiology Letters 2004, 238:375-382.