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Volumn 238, Issue 2, 2004, Pages 375-382

Biodiversity amongst cultivable polycyclic aromatic hydrocarbon- transforming bacteria isolated from an abandoned industrial site

Author keywords

Bioremediation; Denaturing gradient gel electrophoresis; Microbial cenosis; PAH transforming genotypes; Polycyclic aromatic hydrocarbons; Soil bacteria

Indexed keywords

POLYCYCLIC AROMATIC HYDROCARBON;

EID: 4444353526     PISSN: 03781097     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.femsle.2004.07.055     Document Type: Article
Times cited : (34)

References (42)
  • 1
    • 0033117287 scopus 로고    scopus 로고
    • Analyses of polycyclic aromatic hydrocarbon-degrading bacteria isolated from contaminated soils
    • Y. Ahn, J. Sanseverino, and G.S. Sayler Analyses of polycyclic aromatic hydrocarbon-degrading bacteria isolated from contaminated soils Biodegradation 10 1999 149 157
    • (1999) Biodegradation , vol.10 , pp. 149-157
    • Ahn, Y.1    Sanseverino, J.2    Sayler, G.S.3
  • 2
    • 0031967070 scopus 로고    scopus 로고
    • A gene cluster encoding steps in conversion of naphthalene to gentisate in Pseudomonas sp. strain U2
    • S.L. Fuenmayor, M. Wild, A.L. Boyes, and P.A. Williams A gene cluster encoding steps in conversion of naphthalene to gentisate in Pseudomonas sp. strain U2 J. Bacteriol. 180 1998 2522 2530
    • (1998) J. Bacteriol. , vol.180 , pp. 2522-2530
    • Fuenmayor, S.L.1    Wild, M.2    Boyes, A.L.3    Williams, P.A.4
  • 4
    • 0031768236 scopus 로고    scopus 로고
    • Isolation of marine polycyclic aromatic hydrocarbon (PAH)-degrading Cycloclasticus strains from the Gulf of Mexico and comparison of their PAH degradation ability with that of puget sound Cycloclasticus strains
    • A.D. Geiselbrecht, B.P. Hedlund, M.A. Tichi, and J.T. Staley Isolation of marine polycyclic aromatic hydrocarbon (PAH)-degrading Cycloclasticus strains from the Gulf of Mexico and comparison of their PAH degradation ability with that of puget sound Cycloclasticus strains Appl. Environ. Microbiol. 64 1998 4703 4710
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 4703-4710
    • Geiselbrecht, A.D.1    Hedlund, B.P.2    Tichi, M.A.3    Staley, J.T.4
  • 5
    • 0030043375 scopus 로고    scopus 로고
    • Molecular cloning of novel genes for polycyclic aromatic hydrocarbon degradation from Comamonas testosteroni GZ39
    • A.K. Goyal, and G.J. Zylstra Molecular cloning of novel genes for polycyclic aromatic hydrocarbon degradation from Comamonas testosteroni GZ39 Appl. Environ. Microbiol. 62 1996 230 236
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 230-236
    • Goyal, A.K.1    Zylstra, G.J.2
  • 6
    • 0032959907 scopus 로고    scopus 로고
    • Polycyclic aromatic hydrocarbon degradation by a new marine bacterium, Neptunomonas naphthovorans gen. nov., sp. nov
    • B.P. Hedlund, A.D. Geiselbrecht, T.J. Bair, and J.T. Staley Polycyclic aromatic hydrocarbon degradation by a new marine bacterium, Neptunomonas naphthovorans gen. nov., sp. nov Appl. Environ. Microbiol. 65 1999 251 259
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 251-259
    • Hedlund, B.P.1    Geiselbrecht, A.D.2    Bair, T.J.3    Staley, J.T.4
  • 7
    • 0027263427 scopus 로고
    • Biodegradation of polycyclic aromatic hydrocarbons
    • C.E. Cerniglia Biodegradation of polycyclic aromatic hydrocarbons Curr. Opin. Biotechnol. 4 1993 331 338
    • (1993) Curr. Opin. Biotechnol. , vol.4 , pp. 331-338
    • Cerniglia, C.E.1
  • 8
    • 1542410464 scopus 로고    scopus 로고
    • Identification of two new sets of genes for dibenzothiophene transformation in Burkholderia sp. DBT1
    • S. DiGregorio, C. Zocca, S. Sidler, A. Toffanin, D. Lizzari, and G. Vallini Identification of two new sets of genes for dibenzothiophene transformation in Burkholderia sp. DBT1 Biodegradation 15 2004 111 123
    • (2004) Biodegradation , vol.15 , pp. 111-123
    • Digregorio, S.1    Zocca, C.2    Sidler, S.3    Toffanin, A.4    Lizzari, D.5    Vallini, G.6
  • 9
    • 0032900505 scopus 로고    scopus 로고
    • The phn genes of Burkholderia sp. strain RP007 constitute a divergent gene cluster for polycyclic aromatic hydrocarbon catabolism
    • A.D. Laurie, and G. Lloyd-Jones The phn genes of Burkholderia sp. strain RP007 constitute a divergent gene cluster for polycyclic aromatic hydrocarbon catabolism J. Bacteriol. 181 1999 531 540
    • (1999) J. Bacteriol. , vol.181 , pp. 531-540
    • Laurie, A.D.1    Lloyd-Jones, G.2
  • 10
    • 0031437067 scopus 로고    scopus 로고
    • Genetics of naphthalene and phenanthrene degradation by Comamonas testosteroni
    • A.K. Goyal, and G.J. Zylstra Genetics of naphthalene and phenanthrene degradation by Comamonas testosteroni J. Ind. Microbiol. Biotechnol. 19 1997 401 407
    • (1997) J. Ind. Microbiol. Biotechnol. , vol.19 , pp. 401-407
    • Goyal, A.K.1    Zylstra, G.J.2
  • 12
    • 0031468281 scopus 로고    scopus 로고
    • Aromatic hydrocarbon degradation by Sphingomonas yanoikuyae B1
    • G.J. Zylstra, and E. Kim Aromatic hydrocarbon degradation by Sphingomonas yanoikuyae B1 J. Ind. Miocrobiol. Biotechnol. 19 1997 408 414
    • (1997) J. Ind. Miocrobiol. Biotechnol. , vol.19 , pp. 408-414
    • Zylstra, G.J.1    Kim, E.2
  • 13
    • 0032925832 scopus 로고    scopus 로고
    • Analysis of catabolic genes for naphthalene and phenanthrene degradation in contaminated New Zealand soils
    • G. Lloyd-Jones, A.D. Laurie, D.W.F. Hunter, and R. Fraser Analysis of catabolic genes for naphthalene and phenanthrene degradation in contaminated New Zealand soils FEMS Microbiol. Ecol. 29 1999 69 79
    • (1999) FEMS Microbiol. Ecol. , vol.29 , pp. 69-79
    • Lloyd-Jones, G.1    Laurie, A.D.2    Hunter, D.W.F.3    Fraser, R.4
  • 14
    • 0032780518 scopus 로고    scopus 로고
    • Differential detection of key enzymes of polyaromatic-hydrocarbon- degrading bacteria using PCR and gene probes
    • S. Meyer, R. Moser, A. Neef, U. Stahl, and P. Kampfer Differential detection of key enzymes of polyaromatic-hydrocarbon-degrading bacteria using PCR and gene probes Microbiology 145 1999 1731 1741
    • (1999) Microbiology , vol.145 , pp. 1731-1741
    • Meyer, S.1    Moser, R.2    Neef, A.3    Stahl, U.4    Kampfer, P.5
  • 15
    • 0033063637 scopus 로고    scopus 로고
    • Detection of polycyclic aromatic hydrocarbon degradation genes in different soil bacteria by polymerase chain reaction and DNA hybridization
    • C. Hamann, J. Hegemann, and A. Hildebrandt Detection of polycyclic aromatic hydrocarbon degradation genes in different soil bacteria by polymerase chain reaction and DNA hybridization FEMS Microbiol. Lett. 173 1999 255 263
    • (1999) FEMS Microbiol. Lett. , vol.173 , pp. 255-263
    • Hamann, C.1    Hegemann, J.2    Hildebrandt, A.3
  • 16
    • 0037195374 scopus 로고    scopus 로고
    • Detection of known and novel genes encoding aromatic ring-hydroxylating dioxygenases in soils and in aromatic hydrocarbon-degrading bacteria
    • P.M. Taylor, J.M. Medd, L. Schoenborn, B. Hodgson, and P.H. Janssen Detection of known and novel genes encoding aromatic ring-hydroxylating dioxygenases in soils and in aromatic hydrocarbon-degrading bacteria FEMS Microbiol. 216 2002 61 66
    • (2002) FEMS Microbiol. , vol.216 , pp. 61-66
    • Taylor, P.M.1    Medd, J.M.2    Schoenborn, L.3    Hodgson, B.4    Janssen, P.H.5
  • 17
    • 0036163855 scopus 로고    scopus 로고
    • Molecular detection and diversity of polycyclic aromatic hydrocarbon-degrading bacteria isolated from geographically diverse sites
    • J. Widada, H. Nojiri, K. Kasuga, T. Yoshida, H. Habe, and T. Omori Molecular detection and diversity of polycyclic aromatic hydrocarbon-degrading bacteria isolated from geographically diverse sites Appl. Microbiol. Biotechnol. 58 2002 202 209
    • (2002) Appl. Microbiol. Biotechnol. , vol.58 , pp. 202-209
    • Widada, J.1    Nojiri, H.2    Kasuga, K.3    Yoshida, T.4    Habe, H.5    Omori, T.6
  • 19
    • 0020054928 scopus 로고
    • Rapid screen for bacteria degrading water insoluble, solid hydrocarbons on agar plates
    • H. Kiyohara, K. Nagao, and K. Yana Rapid screen for bacteria degrading water insoluble, solid hydrocarbons on agar plates Appl. Environ. Microbial. 43 1982 454 457
    • (1982) Appl. Environ. Microbial. , vol.43 , pp. 454-457
    • Kiyohara, H.1    Nagao, K.2    Yana, K.3
  • 20
    • 0026749836 scopus 로고
    • Enumeration of phenanthrene-degrading bacteria by an overlayer technique and its use in evaluation of petroleum-contaminated sites
    • A.H. Bogardt, and B.B. Hemmingsen Enumeration of phenanthrene-degrading bacteria by an overlayer technique and its use in evaluation of petroleum-contaminated sites Appl. Environ. Microbiol. 58 1992 2579 2582
    • (1992) Appl. Environ. Microbiol. , vol.58 , pp. 2579-2582
    • Bogardt, A.H.1    Hemmingsen, B.B.2
  • 22
    • 0034468557 scopus 로고    scopus 로고
    • Rapid method for co-extraction of DNA and RNA from natural environments for analysis of ribosomal DNA- and rRNA-based microbial community composition
    • R.I. Griffiths, A.S. Whiteley, A.G. O'Donnell, and M.J. Bailey Rapid method for co-extraction of DNA and RNA from natural environments for analysis of ribosomal DNA- and rRNA-based microbial community composition Appl. Environ. Microbiol. 66 2000 5488 5491
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 5488-5491
    • Griffiths, R.I.1    Whiteley, A.S.2    O'Donnell, A.G.3    Bailey, M.J.4
  • 23
    • 0027968068 scopus 로고
    • CLUSTALW: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice
    • J.D. Thompson, D.G. Higgins, and T.J. Gibson CLUSTALW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice Nucl. Acids Res. 22 1994 4673 4680
    • (1994) Nucl. Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 25
    • 0026723774 scopus 로고
    • Use of repetitive (repetitive extragenic palindromic and enterobacterial repetitive intergeneric consensus). Sequences and the polymerase chain reaction to fingerprint the genomes of Rhizobium meliloti isolates and other soil bacteria
    • F.J. de Bruijn Use of repetitive (repetitive extragenic palindromic and enterobacterial repetitive intergeneric consensus). sequences and the polymerase chain reaction to fingerprint the genomes of Rhizobium meliloti isolates and other soil bacteria Appl. Environ. Microbiol. 58 1992 2180 2187
    • (1992) Appl. Environ. Microbiol. , vol.58 , pp. 2180-2187
    • De Bruijn, F.J.1
  • 26
    • 0026323259 scopus 로고
    • Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes
    • J. Versalovic, T. Koeuth, and J.R. Lupski Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes Nucl. Acids Res. 19 1991 6823 6831
    • (1991) Nucl. Acids Res. , vol.19 , pp. 6823-6831
    • Versalovic, J.1    Koeuth, T.2    Lupski, J.R.3
  • 28
    • 0020612907 scopus 로고
    • Expression of naphthalene oxidation genes in Escherichia coli results in the biosynthesis of indigo
    • B.D. Ensley, B.J. Ratzkin, T.D. Osslund, and M.J. Simon Expression of naphthalene oxidation genes in Escherichia coli results in the biosynthesis of indigo Science 222 1983 167 169
    • (1983) Science , vol.222 , pp. 167-169
    • Ensley, B.D.1    Ratzkin, B.J.2    Osslund, T.D.3    Simon, M.J.4
  • 29
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes encoding for 16S rRNA
    • G. Muyzer, E.C. de Waal, and A.G. Uitterlinden Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes encoding for 16S rRNA Appl. Environ. Microbiol. 59 1993 695 700
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 695-700
    • Muyzer, G.1    De Waal, E.C.2    Uitterlinden, A.G.3
  • 30
    • 33847168352 scopus 로고
    • Biodegradation of polycyclic aromatic hydrocarbons
    • C.E. Cerniglia Biodegradation of polycyclic aromatic hydrocarbons Biodegradation 3 1992 351 368
    • (1992) Biodegradation , vol.3 , pp. 351-368
    • Cerniglia, C.E.1
  • 31
    • 0015822179 scopus 로고
    • Identification of microbial products from dibenzothiophene and its proposed oxidation pathway
    • K. Kodama, K. Umehara, K. Shimizu, S. Nakatami, Y. Minoda, and K. Yamada Identification of microbial products from dibenzothiophene and its proposed oxidation pathway Agric. Biol. Chem. 37 1973 45 50
    • (1973) Agric. Biol. Chem. , vol.37 , pp. 45-50
    • Kodama, K.1    Umehara, K.2    Shimizu, K.3    Nakatami, S.4    Minoda, Y.5    Yamada, K.6
  • 32
    • 0035000850 scopus 로고    scopus 로고
    • Insight into the genetic diversity of initial dioxygenases from PAH-degrading bacteria
    • R. Moser, and U. Stahl Insight into the genetic diversity of initial dioxygenases from PAH-degrading bacteria Appl. Microbiol. Biotechnol. 55 2000 609 618
    • (2000) Appl. Microbiol. Biotechnol. , vol.55 , pp. 609-618
    • Moser, R.1    Stahl, U.2
  • 33
    • 0034799210 scopus 로고    scopus 로고
    • Isolation and characterization of the genes encoding a novel oxygenase component of angular dioxygenase from the gram-positive dibenzofuran-degrader Terrabacter sp. strain DBF63
    • K. Kasuga, H. Habe, J.S. Chung, T. Yoshida, H. Nojiri, H. Yamane, and T. Omori Isolation and characterization of the genes encoding a novel oxygenase component of angular dioxygenase from the gram-positive dibenzofuran-degrader Terrabacter sp. strain DBF63 Biochem. Biophys. Res. Commun. 283 2001 195 204
    • (2001) Biochem. Biophys. Res. Commun. , vol.283 , pp. 195-204
    • Kasuga, K.1    Habe, H.2    Chung, J.S.3    Yoshida, T.4    Nojiri, H.5    Yamane, H.6    Omori, T.7
  • 34
    • 0031859323 scopus 로고    scopus 로고
    • Genetic analysis of dioxin dioxigenase of Sphingomonas sp. strain RW1: Catabolic genes dispersed on the genome
    • J. Armengaud, B. Happe, and K.M. Timmis Genetic analysis of dioxin dioxigenase of Sphingomonas sp. strain RW1: catabolic genes dispersed on the genome J. Bacteriol. 180 1998 3954 3966
    • (1998) J. Bacteriol. , vol.180 , pp. 3954-3966
    • Armengaud, J.1    Happe, B.2    Timmis, K.M.3
  • 35
    • 0034034019 scopus 로고    scopus 로고
    • A novel phenanthrene dioxigenase from Nocardioides sp. Strain KP7: Expression in E. coli
    • A. Saito, T. Iwabuchi, and S. Harayama A novel phenanthrene dioxigenase from Nocardioides sp. Strain KP7: expression in E. coli J. Bacteriol. 182 2000 2134 2141
    • (2000) J. Bacteriol. , vol.182 , pp. 2134-2141
    • Saito, A.1    Iwabuchi, T.2    Harayama, S.3
  • 36
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • R.I. Amann, W. Ludwig, and K.H. Schleifer Phylogenetic identification and in situ detection of individual microbial cells without cultivation Microbiol. Rev. 59 1995 143 169
    • (1995) Microbiol. Rev. , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.H.3
  • 38
  • 39
    • 0034118851 scopus 로고    scopus 로고
    • Microbial degradation and detoxification of high molecular weight polycyclic aromatic hydrocarbons by Stenotrophomonas maltophilia strain VUN 10,003
    • A.L. Juhasz, G.A. Stanley, and M.L. Britz Microbial degradation and detoxification of high molecular weight polycyclic aromatic hydrocarbons by Stenotrophomonas maltophilia strain VUN 10,003 Lett. Appl. Microbiol. 30 2000 396 401
    • (2000) Lett. Appl. Microbiol. , vol.30 , pp. 396-401
    • Juhasz, A.L.1    Stanley, G.A.2    Britz, M.L.3
  • 40
    • 0032552094 scopus 로고    scopus 로고
    • Surfactant-enhanced biodegradation of high molecular weight polycyclic aromatic hydrocarbons by Stenotrophomonas maltophilia
    • S. Boonchan, M.L. Britz, and G.A. Stanley Surfactant-enhanced biodegradation of high molecular weight polycyclic aromatic hydrocarbons by Stenotrophomonas maltophilia Biotechnol. Bioeng. 20 1998 482 494
    • (1998) Biotechnol. Bioeng. , vol.20 , pp. 482-494
    • Boonchan, S.1    Britz, M.L.2    Stanley, G.A.3
  • 41
    • 0030958150 scopus 로고    scopus 로고
    • Genetic diversity through the looking glass: Effect of enrichment bias
    • J. Dunbar, S. White, and L. Forney Genetic diversity through the looking glass: effect of enrichment bias Appl. Environ. Microbiol. 63 1997 1326 1331
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 1326-1331
    • Dunbar, J.1    White, S.2    Forney, L.3
  • 42
    • 0006180366 scopus 로고
    • The microstat: Steady-state microenvironments for the subculture of steady-state consortia, communities, and microecosystems
    • R. Guerrero C. Pedros-Alio Spanish Society for Microbiology Barcelona
    • D.E. Caldwell The microstat: steady-state microenvironments for the subculture of steady-state consortia, communities, and microecosystems R. Guerrero C. Pedros-Alio Trends in Microbial Ecology 1993 Spanish Society for Microbiology Barcelona 123 128
    • (1993) Trends in Microbial Ecology , pp. 123-128
    • Caldwell, D.E.1


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