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Volumn 222, Issue , 2013, Pages 145-153

A Workflow for the Application of Biclustering to Mass Spectrometry Data

Author keywords

BiBit; biclustering; Bimax; BiMS; mass spectrometry

Indexed keywords

APPLICATION PROGRAMS; BIOINFORMATICS; DATA PROCESSING;

EID: 84880375507     PISSN: 21945357     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-3-319-00578-2_19     Document Type: Article
Times cited : (4)

References (21)
  • 1
    • 79953139278 scopus 로고    scopus 로고
    • Protein mass spectra data analysis for clinical biomarker discovery: A global review
    • Roy, P., Truntzer, C., Maucort-Boulch, D., Jouve, T., Molinari, N.: Protein mass spectra data analysis for clinical biomarker discovery: A global review. Briefings Bioinf. 12(2), 176-186 (2011)
    • (2011) Briefings Bioinf , vol.12 , Issue.2 , pp. 176-186
    • Roy, P.1    Truntzer, C.2    Maucort-Boulch, D.3    Jouve, T.4    Molinari, N.5
  • 2
    • 10244279272 scopus 로고    scopus 로고
    • Sample classification from protein mass spectrometry, by'peak probability contrasts
    • Tibshirani, R., Hastie, T., Narasimhan, B., Soltys, S., Shi, G., Koong, A., Le, Q.T.: Sample classification from protein mass spectrometry, by'peak probability contrasts. Bioinfor-matics 20(17), 3034-3044 (2004)
    • (2004) Bioinfor-matics , vol.20 , Issue.17 , pp. 3034-3044
    • Tibshirani, R.1    Hastie, T.2    Narasimhan, B.3    Soltys, S.4    Shi, G.5    Koong, A.6    Le, Q.T.7
  • 3
    • 2542640080 scopus 로고    scopus 로고
    • Mass spectrometry as a diagnostic and a cancer biomarker discovery tool: Opportunities and potential limitations
    • Diamandis, E.: Mass spectrometry as a diagnostic and a cancer biomarker discovery tool: Opportunities and potential limitations. Expert Syst. Appl. 3(4), 367-378 (2004)
    • (2004) Expert Syst. Appl , vol.3 , Issue.4 , pp. 367-378
    • Diamandis, E.1
  • 4
    • 77955325026 scopus 로고    scopus 로고
    • A clustering based hybrid system for bio-marker selection and sample classification of mass spectrometry data
    • Yang, P., Zhang, Z., Zhou, B.B., Zomaya, A.Y.: A clustering based hybrid system for bio-marker selection and sample classification of mass spectrometry data. Neurocomput-ing 73(13-15), 2317-2331 (2010)
    • (2010) Neurocomput-ing , vol.73 , Issue.13-15 , pp. 2317-2331
    • Yang, P.1    Zhang, Z.2    Zhou, B.B.3    Zomaya, A.Y.4
  • 5
    • 58749115234 scopus 로고    scopus 로고
    • Mining whole-sample mass spectrometry proteomics data for biomarkers - An overview
    • McDonald, R., Skipp, P., Bennell, J., Potts, C., Thomas, L., O'Connor, C.D.: Mining whole-sample mass spectrometry proteomics data for biomarkers - An overview. Expert Syst. Appl. 36(3), 5333-5340 (2009)
    • (2009) Expert Syst. Appl , vol.36 , Issue.3 , pp. 5333-5340
    • McDonald, R.1    Skipp, P.2    Bennell, J.3    Potts, C.4    Thomas, L.5    O'Connor, C.D.6
  • 6
    • 77953994414 scopus 로고    scopus 로고
    • Analysis of protein complexes through model-based biclustering of label-free quantitative AP-MS data
    • Choi, H., Kim, S., Gingras, A.C., Nesvizhskii, A.: Analysis of protein complexes through model-based biclustering of label-free quantitative AP-MS data. Mol. Syst. Biol. 6, 385 (2010)
    • (2010) Mol. Syst. Biol , vol.6 , pp. 385
    • Choi, H.1    Kim, S.2    Gingras, A.C.3    Nesvizhskii, A.4
  • 11
    • 60549117342 scopus 로고    scopus 로고
    • Comparison of public peak detection algorithms for MALDI mass spectrometry data analysis
    • Yang, C., He, Z., Yu, W.: Comparison of public peak detection algorithms for MALDI mass spectrometry data analysis. BMC Bioinf. 10, 4 (2009)
    • (2009) BMC Bioinf , vol.10 , pp. 4
    • Yang, C.1    He, Z.2    Yu, W.3
  • 12
    • 33748659203 scopus 로고    scopus 로고
    • Improved peak detection in mass spectrum by incorporating continuous wavelet transform-based pattern matching
    • Du, P., Kibbe, W.A., Lin, S.M.: Improved peak detection in mass spectrum by incorporating continuous wavelet transform-based pattern matching. Bioinformatics 22(17), 2059-2065 (2006)
    • (2006) Bioinformatics , vol.22 , Issue.17 , pp. 2059-2065
    • Du, P.1    Kibbe, W.A.2    Lin, S.M.3
  • 13
    • 84865548780 scopus 로고    scopus 로고
    • MALDIquant: A versatile R package for the analysis of mass spec-trometry data
    • Gibb, S., Strimmer, K.: MALDIquant: a versatile R package for the analysis of mass spec-trometry data. Bioinformatics 28(17), 2270-2271 (2012)
    • (2012) Bioinformatics , vol.28 , Issue.17 , pp. 2270-2271
    • Gibb, S.1    Strimmer, K.2
  • 14
    • 3142768191 scopus 로고    scopus 로고
    • Biclustering Algorithms for Biological Data Analysis: A Survey
    • Madeira, S.C., Oliveira, A.L.: Biclustering Algorithms for Biological Data Analysis: A Survey. IEEE/ACM Trans. Comput. Biol. Bioinf. I(I), 24-45 (2004)
    • (2004) IEEE/ACM Trans. Comput. Biol. Bioinf , vol.1 , Issue.1 , pp. 24-45
    • Madeira, S.C.1    Oliveira, A.L.2
  • 18
    • 80053457594 scopus 로고    scopus 로고
    • A biclustering algorithm for extracting bit-patterns from binary datasets
    • Rodriguez-Baena, D.S., Perez-Pulido, A.J., Aguilar-Ruiz, J.S.: A biclustering algorithm for extracting bit-patterns from binary datasets. Bioinformatics 27(19), 2738-2745 (2001)
    • (2001) Bioinformatics , vol.27 , Issue.19 , pp. 2738-2745
    • Rodriguez-Baena, D.S.1    Perez-Pulido, A.J.2    Aguilar-Ruiz, J.S.3
  • 20
    • 84857788669 scopus 로고    scopus 로고
    • Direct matrix assisted laser desorption ionization mass spectrome-try-based analysis of wine as a powerful tool for classification purposes
    • Nunes-Miranda, J.D., Santos, H.M., Reboiro-Jato, M., Fdez-Riverola, F., Igrejas, G., Lo-deiro, C., Capelo, J.L.: Direct matrix assisted laser desorption ionization mass spectrome-try-based analysis of wine as a powerful tool for classification purposes. Talanta 91, 72-76 (2012)
    • (2012) Talanta , vol.91 , pp. 72-76
    • Nunes-Miranda, J.D.1    Santos, H.M.2    Reboiro-Jato, M.3    Fdez-Riverola, F.4    Igrejas, G.5    Lo-Deiro, C.6    Capelo, J.L.7
  • 21
    • 77952010788 scopus 로고    scopus 로고
    • AIBench: A rapid application development framework for translational research in biomedicine
    • Glez-Peña, D., Reboiro-Jato, M., Maia, P., Díaz, F., Fdez-Riverola, F.: AIBench: a rapid application development framework for translational research in biomedicine. Comput. Meth. Prog. Bio. 98, 191-203 (2010)
    • (2010) Comput. Meth. Prog. Bio , vol.98 , pp. 191-203
    • Glez-Peña, D.1    Reboiro-Jato, M.2    Maia, P.3    Díaz, F.4    Fdez-Riverola, F.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.