Human connectomics - What will the future demand?

NeuroImage

Volumn 80, Issue , 2013, Pages 541-544

  Johansen Berg, Heidi ^a  

^a UNIVERSITY OF OXFORD   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BIOMEDICINE; BRAIN CORTEX; BRAIN DISEASE; BRAIN FUNCTION; COGNITION; DATA BASE; DIFFUSION WEIGHTED IMAGING; ELECTROENCEPHALOGRAPHY; FUNCTIONAL ASSESSMENT; FUNCTIONAL MAGNETIC RESONANCE IMAGING; HUMAN; HUMAN CONNECTOMICS; HUMAN GENOME PROJECT; MAGNETOENCEPHALOGRAPHY; MATHEMATICAL ANALYSIS; MATHEMATICAL COMPUTING; METHODOLOGY; NERVE CELL NETWORK; NEUROANATOMY; NEUROIMAGING; NEUROSCIENCE; PRIORITY JOURNAL; VALIDITY;

ANIMALS; BRAIN; CONNECTOME; FORECASTING; HUMANS; MODELS, ANATOMIC; MODELS, NEUROLOGICAL; NERVE NET;

EID: 84880324716     PISSN: 10538119     EISSN: 10959572     Source Type: Journal    
DOI: 10.1016/j.neuroimage.2013.05.082     Document Type: Article

References (59)

1. Abecasis G.R., Auton A., Brooks L.D., DePristo M.A., Durbin R.M., Handsaker R.E., Kang H.M., Marth G.T., McVean G.A. An integrated map of genetic variation from 1,092 human genomes. Nature 2012, 491:56-65.
2. Araque A., Navarrete M. Glial cells in neuronal network function. Philos. Trans. R. Soc. Lond. B Biol. Sci. 2010, 365:2375-2381.
3. Assaf Y., Alexander D.C., Jones D., Bizzi A., Behrens T., Clark C., Cohen Y., Dyrby T.B., Huppi P.S., Knoesche T., Le Bihan D., Parker G.J. The CONNECT project: Combining macro- and micro-structure. NeuroImage 2013, 80:273-282.
4. Biswal B.B., Mennes M., Zuo X.N., Gohel S., Kelly C., Smith S.M., Beckmann C.F., Adelstein J.S., Buckner R.L., Colcombe S., Dogonowski A.M., Ernst M., Fair D., Hampson M., Hoptman M.J., Hyde J.S., Kiviniemi V.J., Kotter R., Li S.J., Lin C.P., Lowe M.J., Mackay C., Madden D.J., Madsen K.H., Margulies D.S., Mayberg H.S., McMahon K., Monk C.S., Mostofsky S.H., Nagel B.J., Pekar J.J., Peltier S.J., Petersen S.E., Riedl V., Rombouts S.A., Rypma B., Schlaggar B.L., Schmidt S., Seidler R.D., Siegle G.J., Sorg C., Teng G.J., Veijola J., Villringer A., Walter M., Wang L., Weng X.C., Whitfield-Gabrieli S., Williamson P., Windischberger C., Zang Y.F., Zhang H.Y., Castellanos F.X., Milham M.P. Toward discovery science of human brain function. Proc. Natl. Acad. Sci. U. S. A. 2010, 107:4734-4739.
5. Caspers S., Eickhoff S.B., Zilles K., Amunts K. Microstructural grey matter parcellation and its relevance for connectome analyses. NeuroImage 2013, 80:18-26.
6. Castellanos F.X., Di Martino A., Craddock R.C., Mehta A.D., Milham M.P. Clinical applications of the functional connectome. NeuroImage 2013, 80:527-540.
7. Catani M., Slater D., DA F. Connectomic approaches before the connectome. NeuroImage 2013, 80:2-13.
8. Chung K., Wallace J., Kim S.Y., Kalyanasundaram S., Andalman A.S., Davidson T.J., Mirzabekov J.J., Zalocusky K.A., Mattis J., Denisin A.K., Pak S., Bernstein H., Ramakrishnan C., Grosenick L., Gradinaru V., Deisseroth K. Structural and molecular interrogation of intact biological systems. Nature 2013, 497(7449):332-337.
9. Cooke S.F., Bliss T.V. Plasticity in the human central nervous system. Brain 2006, 129:1659-1673.
10. da Costa N.M., Martin K.A. Sparse reconstruction of brain circuits: Or, how to survive without a microscopic connectome. NeuroImage 2013, 80:27-36.
11. David O., Job A.-S., De Palma L., Hoffmann D., Minotti L., Kahane P. Probabilistic functional tractography of the human cortex. NeuroImage 2013, 80:307-317.
12. de Reus M.A., van den Heuvel M.P. The parcellation-based connectome: Limitations and extensions. NeuroImage 2013, 80:397-404.
13. Demerens C., Stankoff B., Logak M., Anglade P., Allinquant B., Couraud F., Zalc B., Lubetzki C. Induction of myelination in the central nervous system by electrical activity. Proc. Natl. Acad. Sci. U. S. A. 1996, 93:9887-9892.
14. Evans A. Networks of anatomical covariance. NeuroImage 2013, 80:489-504.
15. Fields R.D. White matter in learning, cognition and psychiatric disorders. Trends Neurosci. 2008, 31:361-370.
16. Fields R.D., Stevens-Graham B. New insights into neuron-glia communication. Science 2002, 298:556-562.
17. Fornito A., Zalesky A., Breakspear M. Graph analysis of the human connectome: Promise, progress, and pitfalls. NeuroImage 2013, 80:426-444.
18. Glasser M.F., Sotiropoulos S.N., Wilson J.A., Coalson T.S., Fischl B., Andersson J., Xu J., Jbabdi S., Webster M., Polimeni J.R., van Essen D., Jenkinson M. The minimal preprocessing pipelines for the Human Connectome Project. NeuroImage 2013, 80:105-124.
19. Gould E., Beylin A., Tanapat P., Reeves A., Shors T.J. Learning enhances adult neurogenesis in the hippocampal formation. Nat. Neurosci. 1999, 2:260-265.
20. Griffa A., Baumann P.S., Thiran J.P., Hagmann P. Structural connectomics in brain diseases. NeuroImage 2013, 80:515-526.
21. Harsan L.A., David C., Reisert M., Schnell S., Hennig J., von Elverfeldt D., Staiger J.F. Mapping remodeling of thalamocortical projections in the living reeler mouse brain by diffusion tractography. Proc. Natl. Acad. Sci. U. S. A. 2013, 110:E1797-E1806.
22. Hihara S., Notoya T., Tanaka M., Ichinose S., Ojima H., Obayashi S., Fujii N., Iriki A. Extension of corticocortical afferents into the anterior bank of the intraparietal sulcus by tool-use training in adult monkeys. Neuropsychologia 2006, 44:2636-2646.
23. Jbabdi S., Johansen-Berg H. Tractography: where do we go from here?. Brain Connectivity 2011, 1:169-183.
24. Jbabdi S., Lehman J.F., Haber S.N., Behrens T.E. Human and monkey ventral prefrontal fibers use the same organizational principles to reach their targets: tracing versus tractography. J. Neurosci. 2013, 33:3190-3201.
25. Jiang T. Brainnetome: A new -ome to understand the brain and its disorders. NeuroImage 2013, 80:263-272.
26. Johansen-Berg H. Structural plasticity: rewiring the brain. Curr. Biol. 2007, 17:R141-R144.
27. Johansen-Berg H., Baptista C.S., Thomas A.G. Human structural plasticity at record speed. Neuron 2012, 73:1058-1060.
28. Kennedy H., Knoblauch K., Toroczkai Z. Why data coherence and quality is critical for understanding interareal cortical networks. NeuroImage 2013, 80:37-45.
29. Larson-Prior L., Oostenveld R., Della Penna S., Michalareas G., Prior F., Babajani-Feremi A., Schoffelen M., Marzetti L., de Pasquale V., Di Pompeo F., Stout J., Woolrich M., Luo Q., Bucholz R., Fries P., Pizzella V., Romani G.L., Corbetta M., Snyder A.Z. Adding dynamics to the Human Connectome Project with MEG. NeuroImage 2013, 80:190-201.
30. Liu T.T. Neurovascular factors in resting-state functional MRI. NeuroImage 2013, 80:339-348.
31. Livet J., Weissman T.A., Kang H., Draft R.W., Lu J., Bennis R.A., Sanes J.R., Lichtman J.W. Transgenic strategies for combinatorial expression of fluorescent proteins in the nervous system. Nature 2007, 450:56-62.
32. Mangin J.F., Fillard P., Cointepas Y., Le Bihan D., Frouin V., Poupon C. Toward global tractography. NeuroImage 2013, 80:290-296.
33. Markov N.T., Ercsey-Ravasz M.M., Ribeiro Gomes A.R., Lamy C., Magrou L., Vezoli J., Misery P., Falchier A., Quilodran R., Gariel M.A., Sallet J., Gamanut R., Huissoud C., Clavagnier S., Giroud P., Sappey-Marinier D., Barone P., Dehay C., Toroczkai Z., Knoblauch K., Van Essen D.C., Kennedy H. A weighted and directed interareal connectivity matrix for macaque cerebral cortex. Cereb. Cortex 2012, (in press) (Sep 25, Electronic publication ahead of print).
34. McNab J.A., Edlow B.L., Witzel T., Huang S.Y., Bhat H., Heberlin K., Feiweier T., Liu K., Keil B., Cohen-Adad J., Tisdall D., Folkerth R., Kinney H.C., Wald L.L. The Human Connectome Project and beyond: Initial applications of 300mT/m gradients. NeuroImage 2013, 80:234-245.
35. Meskaldji D.E., Fischi-Gomez E., Griffa A., Hagmann P., Morgenthaler S., Thiran J.P. Comparing connectomes across subjects and populations at different scales. NeuroImage 2013, 80:416-425.
36. Murphy K., Birn R.M., Bandettini P. Resting-state FMRI confounds and cleanup. NeuroImage 2013, 80:349-359.
37. Nakagawa T.T., Jirsa V.K., Spiegler A., McIntosh A.R., Deco G. Bottom up modeling of the connectome: Linking structure and function in the resting brain and their changes in aging. NeuroImage 2013, 80:318-329.
38. Nedergaard M., Verkhratsky A. Artifact versus reality-how astrocytes contribute to synaptic events. Glia 2012, 60:1013-1023.
39. Passingham R.E. What we can and cannot tell about the wiring of the human brain. NeuroImage 2013, 80:14-17.
40. Picchione D., Duyn J., Horovitz S.G. Sleep and the functional connectome. NeuroImage 2013, 80:387-396.
41. Sadaghiani S., Kleinschmidt A. Functional interactions between intrinsic brain activity and behaviour. NeuroImage 2013, 80:379-386.
42. Sagi Y., Tavor I., Hofstetter S., Tzur-Moryosef S., Blumenfeld-Katzir T., Assaf Y. Learning in the fast lane: new insights into neuroplasticity. Neuron 2012, 73(6):1195-1203.
43. Scholvinck M.L., Leopold D.A., Brookes M.J., Khader P.H. The contribution of electrophysiology to functional connectivity mapping. NeuroImage 2013, 80:297-306.
44. Scholz J., Klein M.C., Behrens T.E., Johansen-Berg H. Training induces changes in white-matter architecture. Nat. Neurosci. 2009, 12:1370-1371.
45. Setsompop K., Kimmlingen R., Eberlein E., Witzel T., Cohen-Adad J., McNab J.A., Keil B., Tisdall D., Hoecht P., Dietz P., Cauley S.F., Tountcheva V., Matschl V., Lenz H., Bhat H., Heberlin K., Potthast A., Thein H., Van Horn J., Toga A., Schmitt F., Lehne D., Rosen B.R., Wedeen V., Wald L.L. Pushing the limits of in vivo diffusion MRI for the Human Connectome Project. NeuroImage 2013, 80:220-233.
46. Smith S.M., Miller K.L., Moeller S., Xu J., Auerbach E.J., Woolrich M.W., Beckmann C.F., Jenkinson M., Andersson J., Glasser M.F., Van Essen D.C., Feinberg D.A., Yacoub E.S., Ugurbil K. Temporally-independent functional modes of spontaneous brain activity. Proc. Natl. Acad. Sci. U. S. A. 2012, 109:3131-3136.
47. Smith S.M., Andersson J., Auerbach E.J., Beckmann C., Bijsterbosch J., Douaud G., Duff E., Feinberg D.A., Griffanti L., Harms M.P., Kelly M., Laumann T., Miller K.L., Moeller S., Peterson S., Power J., Salimi-Khorshidi G., Snyder A.Z., Vu A., Woolrich M.W., Xu J., Yacoub E., Ugurbil K., van Essen D., Glasser M.F. Resting-state fMRI in the Human Connectome Project. NeuroImage 2013, 80:144-168.
48. Sotiropoulos S.N., Jbabdi S., Xu J., Andersson J.L., Moeller S., Auerbach E.J., Glasser M.F., Hernandez M., Sapiro G., Jenkinson M., Feinberg D.A., Yacoub E., Lenglet C., van Essen D., Ugurbil K., Behrens T.E. Advances in diffusion MRI acquisition and processing in the Human Connectome Project. NeuroImage 2013, 80:125-143.
49. Sporns O. The human connectome: Origins and challenges. NeuroImage 2013, 80:53-61.
50. Stephan K.E. The history of CoCoMac. NeuroImage 2013, 80:46-52.
51. Ugurbil K., Xu J., Auerbach E.J., Moeller S., Vu A., Duarte-Carvajalino J.M., Lenglet C., Wu X., Schmitter S., Van de Moortele P.F., Strupp J.P., Sapiro G., De Martino F., Wang D., Harel N., Garwood M., Chen L., Feinberg D.A., Smith S.M., Miller K.L., Sotiropoulos S.N., Jbabdi S., Andersson J., Behrens T.E.J., Glasser M.F., van Essen D., Yacoub E. Pushing spatial and temporal resolution for functional and diffusion MRI in the Human Connectome Project. NeuroImage 2013, 80:80-104.
52. van Essen D., Smith S.M., Barch D.M., Behrens T.E., Yacoub E., Ugurbil K. The WU-Minn Human Connectome Project: An overview. NeuroImage 2013, 80:62-79.
53. Varoquaux G., Craddock R.C. Learning and comparing functional connectomes across subjects. NeuroImage 2013, 80:405-415.
54. Woolrich M.W., Stephan K.E. Biophysical network models and the human connectome. NeuroImage 2013, 80:330-338.
55. Xu T., Yu X., Perlik A.J., Tobin W.F., Zweig J.A., Tennant K., Jones T., Zuo Y. Rapid formation and selective stabilization of synapses for enduring motor memories. Nature 2009, 462:915-919.
56. Yan C.G., Craddock R.C., Zuo X.N., Zang Y.F., Milham M.P. Standardizing the intrinsic brain: Towards robust measurement of inter-individual variation in 1000 functional connectomes. NeuroImage 2013, 80:246-262.
57. Yang G., Pan F., Gan W.B. Stably maintained dendritic spines are associated with lifelong memories. Nature 2009, 462:920-924.
58. Zalesky A., Fornito A., Harding I.H., Cocchi L., Yucel M., Pantelis C., Bullmore E.T. Whole-brain anatomical networks: does the choice of nodes matter?. NeuroImage 2010, 50:970-983.
59. Zatorre R., Fields R.D., Johansen-Berg H. Plasticity in gray and white: neuroimaging changes in brain structure during learning. Nat. Neurosci. 2013, 18;15(4):528-536.