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Volumn 62, Issue 4, 2013, Pages 609-627

A coupled hidden Markov model for disease interactions

Author keywords

Adaptive Markov chain Monte Carlo sampling; Forward backward algorithm; Gibbs sampler; Hidden Markov models; Zoonosis

Indexed keywords


EID: 84880314921     PISSN: 00359254     EISSN: 14679876     Source Type: Journal    
DOI: 10.1111/rssc.12015     Document Type: Article
Times cited : (34)

References (43)
  • 1
    • 79953177017 scopus 로고    scopus 로고
    • Persistent infection or successive reinfection of deer mice with Bartonella vinsonii subsp. arupensis
    • Bai, Y., Calisher, C. H., Kosoy, M. Y., Root, J. J. and Doty, J. B. (2011) Persistent infection or successive reinfection of deer mice with Bartonella vinsonii subsp. arupensis. Appl. Environ. Microbiol., 77, 1728-1731.
    • (2011) Appl. Environ. Microbiol. , vol.77 , pp. 1728-1731
    • Bai, Y.1    Calisher, C.H.2    Kosoy, M.Y.3    Root, J.J.4    Doty, J.B.5
  • 2
    • 0000353178 scopus 로고
    • A maximisation technique occurring in the statistical analysis of probabilistic functions of Markov chains
    • Baum, I. E., Petrie, Y., Soules, G. and Weiss, N. (1970) A maximisation technique occurring in the statistical analysis of probabilistic functions of Markov chains. Ann. Math. Statist., 41, 164-171.
    • (1970) Ann. Math. Statist. , vol.41 , pp. 164-171
    • Baum, I.E.1    Petrie, Y.2    Soules, G.3    Weiss, N.4
  • 3
    • 63149178645 scopus 로고    scopus 로고
    • Effects of abundance on infection in natural populations: field voles and cowpox virus
    • Begon, M., Telfer, S., Burthe, S. J., Lambin, X., Smith, J. M. and Paterson, S. (2009) Effects of abundance on infection in natural populations: field voles and cowpox virus. Epidemics, 1, 35-46.
    • (2009) Epidemics , vol.1 , pp. 35-46
    • Begon, M.1    Telfer, S.2    Burthe, S.J.3    Lambin, X.4    Smith, J.M.5    Paterson, S.6
  • 5
    • 0034997025 scopus 로고    scopus 로고
    • Longitudinal monitoring of the dynamics of infections due to Bartonella species in UK woodland rodents
    • Birtles, R. J., Hazel, S. M., Bennett, M., Bown, K., Raoult, D. and Begon, M. (2001) Longitudinal monitoring of the dynamics of infections due to Bartonella species in UK woodland rodents. Epidem. Infectn, 126, 323-329.
    • (2001) Epidem. Infectn , vol.126 , pp. 323-329
    • Birtles, R.J.1    Hazel, S.M.2    Bennett, M.3    Bown, K.4    Raoult, D.5    Begon, M.6
  • 6
    • 1842536090 scopus 로고    scopus 로고
    • Flea-borne Bartonella grahamii and Bartonella taylorii in Bank Voles
    • Bown, K. J., Bennett, M. and Begon, M. (2004) Flea-borne Bartonella grahamii and Bartonella taylorii in Bank Voles. Emergng Infect. Dis., 10, 684-687.
    • (2004) Emergng Infect. Dis. , vol.10 , pp. 684-687
    • Bown, K.J.1    Bennett, M.2    Begon, M.3
  • 7
    • 57149090721 scopus 로고    scopus 로고
    • Relative importance of Ixodes ricinus and Ixodes trianguliceps as vectors for Anaplasma phagocytophilum and Babesia microti in field vole (Microtus agrestis) populations
    • Bown, K. J., Lambin, X., Telford, G. R., Ogden, N. H., Telfer, S., Woldehiwet, Z. and Birtles, R. J. (2008) Relative importance of Ixodes ricinus and Ixodes trianguliceps as vectors for Anaplasma phagocytophilum and Babesia microti in field vole (Microtus agrestis) populations. Appl. Environ. Microbiol., 74, 7118-7125.
    • (2008) Appl. Environ. Microbiol. , vol.74 , pp. 7118-7125
    • Bown, K.J.1    Lambin, X.2    Telford, G.R.3    Ogden, N.H.4    Telfer, S.5    Woldehiwet, Z.6    Birtles, R.J.7
  • 8
    • 84880303984 scopus 로고    scopus 로고
    • Coupled hidden Markov Models for modelling interacting processes. Technical Report 405. Massachusetts Institute of Technology Media Laboratory, Cambridge.
    • Brand, M. (1997) Coupled hidden Markov Models for modelling interacting processes. Technical Report 405. Massachusetts Institute of Technology Media Laboratory, Cambridge.
    • (1997)
    • Brand, M.1
  • 9
    • 77949275219 scopus 로고    scopus 로고
    • Individual growth rates in natural field voles, Microtus agrestis, populations exhibiting cyclic population dynamics
    • Burthe, S. J., Lambin, X., Telfer, S., Douglas, A., Beldomenico, P., Smith, A. and Begon, M. (2009) Individual growth rates in natural field voles, Microtus agrestis, populations exhibiting cyclic population dynamics. Oecologia, 162, 653-661.
    • (2009) Oecologia , vol.162 , pp. 653-661
    • Burthe, S.J.1    Lambin, X.2    Telfer, S.3    Douglas, A.4    Beldomenico, P.5    Smith, A.6    Begon, M.7
  • 12
    • 0003107701 scopus 로고    scopus 로고
    • Calculating posterior distributions and modal estimates in Markov mixture models
    • Chib, S. (1996) Calculating posterior distributions and modal estimates in Markov mixture models. J. Econmetr., 75, 79-97.
    • (1996) J. Econmetr. , vol.75 , pp. 79-97
    • Chib, S.1
  • 14
    • 3142658734 scopus 로고    scopus 로고
    • Multiplex real-time PCR for detection of Anaplasma phagocytophilum and Borrelia burgdorferi
    • Courtney, J. W. L., Kostelnik, M., Zeidner, N. S. and Massung, R. F. (2004) Multiplex real-time PCR for detection of Anaplasma phagocytophilum and Borrelia burgdorferi. J. Clin. Microbiol., 42, 3164-3168.
    • (2004) J. Clin. Microbiol. , vol.42 , pp. 3164-3168
    • Courtney, J.W.L.1    Kostelnik, M.2    Zeidner, N.S.3    Massung, R.F.4
  • 16
    • 33750325305 scopus 로고    scopus 로고
    • An exact Gibbs sampler for the Markov-modulated Poisson process
    • Fearnhead, P. and Sherlock, C. (2006) An exact Gibbs sampler for the Markov-modulated Poisson process. J. R. Statist. Soc. B, 68, 767-784.
    • (2006) J. R. Statist. Soc. B , vol.68 , pp. 767-784
    • Fearnhead, P.1    Sherlock, C.2
  • 17
    • 0001582213 scopus 로고    scopus 로고
    • Inference and monitoring convergence
    • (eds W. R. Gilks, S. Richardson and D. J. Spiegelhalter). London: Chapman and Hall.
    • Gelman, A. (1996) Inference and monitoring convergence. In Markov Chain Monte Carlo in Practice (eds W. R. Gilks, S. Richardson and D. J. Spiegelhalter). London: Chapman and Hall.
    • (1996) Markov Chain Monte Carlo in Practice
    • Gelman, A.1
  • 18
    • 84972492387 scopus 로고
    • Inference from iterative simulation using multiple sequences
    • Gelman, A. and Rubin, D. (1992) Inference from iterative simulation using multiple sequences. Statist. Sci., 7, 457-472.
    • (1992) Statist. Sci. , vol.7 , pp. 457-472
    • Gelman, A.1    Rubin, D.2
  • 20
    • 77956889087 scopus 로고
    • Reversible jump Markov chain Monte Carlo computation and Bayesian model determination
    • Green, P. J. (1995) Reversible jump Markov chain Monte Carlo computation and Bayesian model determination. Biometrika, 82, 711-732.
    • (1995) Biometrika , vol.82 , pp. 711-732
    • Green, P.J.1
  • 21
    • 0141907306 scopus 로고    scopus 로고
    • Estimating hidden semi-Markov chains from discrete sequences
    • Guédon, Y. (2003) Estimating hidden semi-Markov chains from discrete sequences. J. Computnl Graph Statist., 12, 604-639.
    • (2003) J. Computnl Graph Statist. , vol.12 , pp. 604-639
    • Guédon, Y.1
  • 22
    • 0033864135 scopus 로고    scopus 로고
    • Modelling markers of disease progression by a hidden Markov process: application to characterising CD4 cell decline
    • Guihenneuc-Jouyaux, C., Richardson, S. and Longini, I. M. (2000) Modelling markers of disease progression by a hidden Markov process: application to characterising CD4 cell decline. Biometrics, 56, 733-741.
    • (2000) Biometrics , vol.56 , pp. 733-741
    • Guihenneuc-Jouyaux, C.1    Richardson, S.2    Longini, I.M.3
  • 23
    • 12344336572 scopus 로고    scopus 로고
    • Prospective studies of Bartonella of rodents: part I, Demographic and temporal patterns in population dynamics
    • Kosoy, M., Mandel, E., Green, D., Marston, E. and Childs, J. (2004) Prospective studies of Bartonella of rodents: part I, Demographic and temporal patterns in population dynamics. Vect. Borne Zoonotic Dis., 4, 285-295.
    • (2004) Vect. Borne Zoonotic Dis. , vol.4 , pp. 285-295
    • Kosoy, M.1    Mandel, E.2    Green, D.3    Marston, E.4    Childs, J.5
  • 24
    • 80053636950 scopus 로고    scopus 로고
    • Infection dynamics of endemic malaria in a wild bird population: parasite species-dependent drivers of spatial and temporal variation in transmission rates
    • Lachish, S., Knowles, S. C. L., Alves, R., Wood, M. J. and Sheldon, B. C. (2011) Infection dynamics of endemic malaria in a wild bird population: parasite species-dependent drivers of spatial and temporal variation in transmission rates. J. Anim. Ecol., 80, 1207-1216.
    • (2011) J. Anim. Ecol. , vol.80 , pp. 1207-1216
    • Lachish, S.1    Knowles, S.C.L.2    Alves, R.3    Wood, M.J.4    Sheldon, B.C.5
  • 25
    • 84880263610 scopus 로고    scopus 로고
    • Coupled hidden semi Markov models for activity recognition. Institute of Electrical and Electronics Engineers Wrkshp Motion and Video Computing.
    • Natarajan, P. and Nevatia, R. (2007) Coupled hidden semi Markov models for activity recognition. Institute of Electrical and Electronics Engineers Wrkshp Motion and Video Computing.
    • (2007)
    • Natarajan, P.1    Nevatia, R.2
  • 26
    • 20744432315 scopus 로고    scopus 로고
    • Multievent: an extension of multistate capture-recapture models to uncertain states
    • Pradel, R. (2005) Multievent: an extension of multistate capture-recapture models to uncertain states. Biometrics, 61, 442-447.
    • (2005) Biometrics , vol.61 , pp. 442-447
    • Pradel, R.1
  • 27
    • 0024610919 scopus 로고
    • A tutorial on hidden Markov models and selected applications in speech recognition
    • Rabiner, L. R. (1989) A tutorial on hidden Markov models and selected applications in speech recognition. Proc. IEEE, 77, 257-286.
    • (1989) Proc. IEEE , vol.77 , pp. 257-286
    • Rabiner, L.R.1
  • 28
    • 84863304598 scopus 로고    scopus 로고
    • R Development Core Team Vienna: R Foundation for Statistical Computing.
    • R Development Core Team (2012) R: a Language and Environment for Statistical Computing. Vienna: R Foundation for Statistical Computing.
    • (2012) R: a Language and Environment for Statistical Computing
  • 29
    • 0034313933 scopus 로고    scopus 로고
    • Learning interaction dynamics with couple hidden Markov models
    • Rezek, I., Sykacek, P. and Roberts, S. J. (2000) Learning interaction dynamics with couple hidden Markov models. IEE Proc. Sci. Measmnt Technol., 147, 345-350.
    • (2000) IEE Proc. Sci. Measmnt Technol. , vol.147 , pp. 345-350
    • Rezek, I.1    Sykacek, P.2    Roberts, S.J.3
  • 30
    • 43949174023 scopus 로고
    • Bayesian estimation of hidden Markov chains: a stochastic implementation
    • Robert, C. P., Celeux, G. and Diebolt, J. (1993) Bayesian estimation of hidden Markov chains: a stochastic implementation. Statist. Probab. Lett., 16, 77-83.
    • (1993) Statist. Probab. Lett. , vol.16 , pp. 77-83
    • Robert, C.P.1    Celeux, G.2    Diebolt, J.3
  • 31
    • 0033236612 scopus 로고    scopus 로고
    • Convergence controls for MCMC algorithms, with application to hidden Markov chains
    • Robert, C. P., Rydén, G. and Titterington, D. M. (1999) Convergence controls for MCMC algorithms, with application to hidden Markov chains. J. Statist. Computn Simuln, 64, 327-355.
    • (1999) J. Statist. Computn Simuln , vol.64 , pp. 327-355
    • Robert, C.P.1    Rydén, G.2    Titterington, D.M.3
  • 32
    • 0041724127 scopus 로고    scopus 로고
    • Reparameterization strategies for hidden Markov models and Bayesian approaches to maximum likelihood estimation
    • Robert, C. P. and Titterington, D. M. (1998) Reparameterization strategies for hidden Markov models and Bayesian approaches to maximum likelihood estimation. Statist. Comput., 8, 145-158.
    • (1998) Statist. Comput. , vol.8 , pp. 145-158
    • Robert, C.P.1    Titterington, D.M.2
  • 33
    • 0013037129 scopus 로고    scopus 로고
    • Optimal scaling for various Metropolis-Hastings algorithms
    • Roberts, G. O. and Rosenthal, J. (2001) Optimal scaling for various Metropolis-Hastings algorithms. Statist. Sci., 16, 351-367.
    • (2001) Statist. Sci. , vol.16 , pp. 351-367
    • Roberts, G.O.1    Rosenthal, J.2
  • 34
    • 0032596518 scopus 로고    scopus 로고
    • Mixed memory Markov models: decomposing complex stochastic processes as mixtures of simpler ones
    • Saul, K. and Jordan, M. (1999) Mixed memory Markov models: decomposing complex stochastic processes as mixtures of simpler ones. Mach. Learn., 37, 75-87.
    • (1999) Mach. Learn. , vol.37 , pp. 75-87
    • Saul, K.1    Jordan, M.2
  • 35
    • 0036489069 scopus 로고    scopus 로고
    • Bayesian methods for hidden Markov models: recursive computing in the 21th century
    • Scott, S. L. (2002) Bayesian methods for hidden Markov models: recursive computing in the 21th century. J. Am. Statist. Ass., 97, 337-351.
    • (2002) J. Am. Statist. Ass. , vol.97 , pp. 337-351
    • Scott, S.L.1
  • 36
    • 78650237279 scopus 로고    scopus 로고
    • The random walk Metropolis: linking theory and practice through a case study
    • Sherlock, C., Fearnhead, P. and Roberts, G. O. (2010) The random walk Metropolis: linking theory and practice through a case study. Statist. Sci., 28, 172-190.
    • (2010) Statist. Sci. , vol.28 , pp. 172-190
    • Sherlock, C.1    Fearnhead, P.2    Roberts, G.O.3
  • 37
    • 72249090639 scopus 로고    scopus 로고
    • Optimal scaling of the random walk Metropolis on elliptically symmetric unimodal targets
    • Sherlock, C. and Roberts, G. (2009) Optimal scaling of the random walk Metropolis on elliptically symmetric unimodal targets. Bernoulli, 15, 774-798.
    • (2009) Bernoulli , vol.15 , pp. 774-798
    • Sherlock, C.1    Roberts, G.2
  • 38
    • 33846815195 scopus 로고    scopus 로고
    • Contrasting dynamics of Bartonella spp. in cyclic field vole populations: the impact of vector and host dynamics
    • Telfer, S., Begon, M., Bennett, M., Bown, K., Burthe, S., Lambin, X., Telford, G. and Birtles, R. (2007) Contrasting dynamics of Bartonella spp. in cyclic field vole populations: the impact of vector and host dynamics. Parasitology, 134, 413-425.
    • (2007) Parasitology , vol.134 , pp. 413-425
    • Telfer, S.1    Begon, M.2    Bennett, M.3    Bown, K.4    Burthe, S.5    Lambin, X.6    Telford, G.7    Birtles, R.8
  • 39
    • 46249099050 scopus 로고    scopus 로고
    • Parasite interactions in natural populations: insights from longitudinal data
    • Telfer, S., Birtles, R., Bennett, M., Lambin, X., Paterson, S. and Begon, M. (2008) Parasite interactions in natural populations: insights from longitudinal data. Parasitology, 135, 767-781.
    • (2008) Parasitology , vol.135 , pp. 767-781
    • Telfer, S.1    Birtles, R.2    Bennett, M.3    Lambin, X.4    Paterson, S.5    Begon, M.6
  • 40
    • 77957737494 scopus 로고    scopus 로고
    • Species interactions in a parasite community drive infection risk in a wildlife population
    • Telfer, S., Lambin, X., Birtles, R., Beldomenico, P., Burthe, S. J., Paterson, S. and Begon, M. (2010) Species interactions in a parasite community drive infection risk in a wildlife population. Science, 330, 243-246.
    • (2010) Science , vol.330 , pp. 243-246
    • Telfer, S.1    Lambin, X.2    Birtles, R.3    Beldomenico, P.4    Burthe, S.J.5    Paterson, S.6    Begon, M.7
  • 41
    • 84880268363 scopus 로고    scopus 로고
    • A hidden Markov model for disease interactions in field voles. Technical Report. Depart ment of Mathematics and Statistics, Lancaster University, Lancaster. (Available from)
    • Xifara, T. D. (2012) A hidden Markov model for disease interactions in field voles. Technical Report. Depart ment of Mathematics and Statistics, Lancaster University, Lancaster. (Available from http://www.math.lancs.ac.uk/~xifara.)
    • (2012)
    • Xifara, T.D.1
  • 42
    • 0036079795 scopus 로고    scopus 로고
    • HMMs and coupled HMMs for multi-channel EEG classification
    • New York: Institute of Electrical and Electronics Engineers.
    • Zhong, S. and Ghosh, J. (2002) HMMs and coupled HMMs for multi-channel EEG classification. In Proc. Int. Jt Conf. Neural Networks, pp. 1154-1159. New York: Institute of Electrical and Electronics Engineers.
    • (2002) Proc. Int. Jt Conf. Neural Networks , pp. 1154-1159
    • Zhong, S.1    Ghosh, J.2


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