메뉴 건너뛰기




Volumn 140, Issue 15, 2013, Pages 3244-3253

Short-lived her proteins drive robust synchronized oscillations in the Zebrafish segmentation clock

Author keywords

Computational modeling; Oscillation; Protein half life; Segmentation clock; Systems biology; Zebrafish

Indexed keywords

DIMER; EPIDERMAL GROWTH FACTOR HUMAN 1; EPIDERMAL GROWTH FACTOR HUMAN 7; GAMMA UROGASTRONE; HETERODIMER; NOTCH RECEPTOR; PROTEIN; PROTEINASE INHIBITOR; UNCLASSIFIED DRUG;

EID: 84880277364     PISSN: 09501991     EISSN: 14779129     Source Type: Journal    
DOI: 10.1242/dev.093278     Document Type: Article
Times cited : (47)

References (36)
  • 1
    • 36849077107 scopus 로고    scopus 로고
    • A modified next reaction method for simulating chemical systems with time dependent propensities and delays
    • Anderson, D. F. (2007). A modified next reaction method for simulating chemical systems with time dependent propensities and delays. J. Chem. Phys. 127, 214107.
    • (2007) J. Chem. Phys , vol.127 , pp. 214107
    • Anderson, D.F.1
  • 2
    • 22144443131 scopus 로고    scopus 로고
    • Nonlinear protein degradation and the function of genetic circuits
    • Buchler, N. E., Gerland, U. and Hwa, T. (2005). Nonlinear protein degradation and the function of genetic circuits. Proc. Natl. Acad. Sci. USA 102, 9559-9564.
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 9559-9564
    • Buchler, N.E.1    Gerland, U.2    Hwa, T.3
  • 3
    • 84862502310 scopus 로고    scopus 로고
    • Analysis of her1 and her7 mutants reveals a spatio temporal separation of the somite clock module
    • Choorapoikayil, S., Willems, B., Ströhle, P. and Gajewski, M. (2012). Analysis of her1 and her7 mutants reveals a spatio temporal separation of the somite clock module. PLoS ONE 7, e39073.
    • (2012) PLoS ONE , vol.7
    • Choorapoikayil, S.1    Willems, B.2    Ströhle, P.3    Gajewski, M.4
  • 4
    • 33847316015 scopus 로고    scopus 로고
    • Repressor dimerization in the zebrafish somitogenesis clock
    • Cinquin, O. (2007). Repressor dimerization in the zebrafish somitogenesis clock. PLOS Comput. Biol. 3, e32.
    • (2007) PLOS Comput. Biol , vol.3
    • Cinquin, O.1
  • 5
    • 84869061827 scopus 로고    scopus 로고
    • Single-cellresolution imaging of the impact of Notch signaling and mitosis on segmentation clock dynamics
    • Delaune, E. A., François, P., Shih, N. P. and Amacher, S. L. (2012). Single-cellresolution imaging of the impact of Notch signaling and mitosis on segmentation clock dynamics. Dev. Cell 23, 995-1005.
    • (2012) Dev. Cell , vol.23 , pp. 995-1005
    • Delaune, E.A.1    François, P.2    Shih, N.P.3    Amacher, S.L.4
  • 7
    • 0042673755 scopus 로고    scopus 로고
    • Anterior and posterior waves of cyclic her1 gene expression are differentially regulated in the presomitic mesoderm of zebrafish
    • Gajewski, M., Sieger, D., Alt, B., Leve, C., Hans, S., Wolff, C., Rohr, K. B. and Tautz, D. (2003). Anterior and posterior waves of cyclic her1 gene expression are differentially regulated in the presomitic mesoderm of zebrafish. Development 130, 4269-4278.
    • (2003) Development , vol.130 , pp. 4269-4278
    • Gajewski, M.1    Sieger, D.2    Alt, B.3    Leve, C.4    Hans, S.5    Wolff, C.6    Rohr, K.B.7    Tautz, D.8
  • 8
    • 34250316233 scopus 로고    scopus 로고
    • Setting the tempo in development: An investigation of the zebrafish somite clock mechanism
    • Giudicelli, F., Ozbudak, E. M., Wright, G. J. and Lewis, J. (2007). Setting the tempo in development: an investigation of the zebrafish somite clock mechanism. PLoS Biol. 5, e150.
    • (2007) PLoS Biol , vol.5
    • Giudicelli, F.1    Ozbudak, E.M.2    Wright, G.J.3    Lewis, J.4
  • 9
    • 42449157505 scopus 로고    scopus 로고
    • Modeling the segmentation clock as a network of coupled oscillations in the Notch, Wnt and FGF signaling pathways
    • Goldbeter, A. and Pourquié, O. (2008). Modeling the segmentation clock as a network of coupled oscillations in the Notch, Wnt and FGF signaling pathways. J. Theor. Biol. 252, 574-585.
    • (2008) J. Theor. Biol , vol.252 , pp. 574-585
    • Goldbeter, A.1    Pourquié, O.2
  • 11
    • 84871538634 scopus 로고    scopus 로고
    • The elongation rate of RNA polymerase II in zebrafish and its significance in the somite segmentation clock
    • Hanisch, A., Holder, M. V., Choorapoikayil, S., Gajewski, M., Özbudak, E. M. and Lewis, J. (2013). The elongation rate of RNA polymerase II in zebrafish and its significance in the somite segmentation clock. Development 140, 444-453.
    • (2013) Development , vol.140 , pp. 444-453
    • Hanisch, A.1    Holder, M.V.2    Choorapoikayil, S.3    Gajewski, M.4    Özbudak, E.M.5    Lewis, J.6
  • 12
    • 0036679340 scopus 로고    scopus 로고
    • Two linked hairy/Enhancer of split-related zebrafish genes, her1 and her7, function together to refine alternating somite boundaries
    • Henry, C. A., Urban, M. K., Dill, K. K., Merlie, J. P., Page, M. F., Kimmel, C. B. and Amacher, S. L. (2002). Two linked hairy/Enhancer of split-related zebrafish genes, her1 and her7, function together to refine alternating somite boundaries. Development 129, 3693-3704.
    • (2002) Development , vol.129 , pp. 3693-3704
    • Henry, C.A.1    Urban, M.K.2    Dill, K.K.3    Merlie, J.P.4    Page, M.F.5    Kimmel, C.B.6    Amacher, S.L.7
  • 15
    • 33745000977 scopus 로고    scopus 로고
    • Noise-resistant and synchronized oscillation of the segmentation clock
    • Horikawa, K., Ishimatsu, K., Yoshimoto, E., Kondo, S. and Takeda, H. (2006). Noise-resistant and synchronized oscillation of the segmentation clock. Nature 441, 719-723.
    • (2006) Nature , vol.441 , pp. 719-723
    • Horikawa, K.1    Ishimatsu, K.2    Yoshimoto, E.3    Kondo, S.4    Takeda, H.5
  • 16
    • 0037464494 scopus 로고    scopus 로고
    • Sustained oscillations and time delays in gene expression of protein Hes1
    • Jensen, M. H., Sneppen, K. and Tiana, G. (2003). Sustained oscillations and time delays in gene expression of protein Hes1. FEBS Lett. 541, 176-177.
    • (2003) FEBS Lett , vol.541 , pp. 176-177
    • Jensen, M.H.1    Sneppen, K.2    Tiana, G.3
  • 17
    • 0034707072 scopus 로고    scopus 로고
    • Notch signalling and the synchronization of the somite segmentation clock
    • Jiang, Y. J., Aerne, B. L., Smithers, L., Haddon, C., Ish-Horowicz, D. and Lewis, J. (2000). Notch signalling and the synchronization of the somite segmentation clock. Nature 408, 475-479.
    • (2000) Nature , vol.408 , pp. 475-479
    • Jiang, Y.J.1    Aerne, B.L.2    Smithers, L.3    Haddon, C.4    Ish-Horowicz, D.5    Lewis, J.6
  • 18
    • 18844427286 scopus 로고    scopus 로고
    • Zebrafish hairy/enhancer of split protein links FGF signaling to cyclic gene expression in the periodic segmentation of somites
    • Kawamura, A., Koshida, S., Hijikata, H., Sakaguchi, T., Kondoh, H. and Takada, S. (2005). Zebrafish hairy/enhancer of split protein links FGF signaling to cyclic gene expression in the periodic segmentation of somites. Genes Dev. 19, 1156-1161.
    • (2005) Genes Dev , vol.19 , pp. 1156-1161
    • Kawamura, A.1    Koshida, S.2    Hijikata, H.3    Sakaguchi, T.4    Kondoh, H.5    Takada, S.6
  • 20
    • 0041677612 scopus 로고    scopus 로고
    • Autoinhibition with transcriptional delay: A simple mechanism for the zebrafish somitogenesis oscillator
    • Lewis, J. (2003). Autoinhibition with transcriptional delay: a simple mechanism for the zebrafish somitogenesis oscillator. Curr. Biol. 13, 1398-1408.
    • (2003) Curr. Biol , vol.13 , pp. 1398-1408
    • Lewis, J.1
  • 21
    • 34247863926 scopus 로고    scopus 로고
    • Priming, initiation and synchronization of the segmentation clock by deltaD and deltaC
    • Mara, A., Schroeder, J., Chalouni, C. and Holley, S. A. (2007). Priming, initiation and synchronization of the segmentation clock by deltaD and deltaC. Nat. Cell Biol. 9, 523-530.
    • (2007) Nat. Cell Biol , vol.9 , pp. 523-530
    • Mara, A.1    Schroeder, J.2    Chalouni, C.3    Holley, S.A.4
  • 22
    • 52149096254 scopus 로고    scopus 로고
    • Dissecting the dynamics of the Hes1 genetic oscillator
    • Momiji, H. and Monk, N. A. (2008). Dissecting the dynamics of the Hes1 genetic oscillator. J. Theor. Biol. 254, 784-798.
    • (2008) J. Theor. Biol , vol.254 , pp. 784-798
    • Momiji, H.1    Monk, N.A.2
  • 23
    • 0043180477 scopus 로고    scopus 로고
    • Oscillatory expression of Hes1, p53, and NF-kappaB driven by transcriptional time delays
    • Monk, N. A. M. (2003). Oscillatory expression of Hes1, p53, and NF-kappaB driven by transcriptional time delays. Curr. Biol. 13, 1409-1413.
    • (2003) Curr. Biol , vol.13 , pp. 1409-1413
    • Monk, N.A.M.1
  • 24
    • 0035984002 scopus 로고    scopus 로고
    • Hairy/E(spl)-related (Her) genes are central components of the segmentation oscillator and display redundancy with the Delta/Notch signaling pathway in the formation of anterior segmental boundaries in the zebrafish
    • Oates, A. C. and Ho, R. K. (2002). Hairy/E(spl)-related (Her) genes are central components of the segmentation oscillator and display redundancy with the Delta/Notch signaling pathway in the formation of anterior segmental boundaries in the zebrafish. Development 129, 2929-2946.
    • (2002) Development , vol.129 , pp. 2929-2946
    • Oates, A.C.1    Ho, R.K.2
  • 25
    • 40149093742 scopus 로고    scopus 로고
    • Notch signalling synchronizes the zebrafish segmentation clock but is not needed to create somite boundaries
    • Ozbudak, E. M. and Lewis, J. (2008). Notch signalling synchronizes the zebrafish segmentation clock but is not needed to create somite boundaries. PLoS Genet. 4, e15.
    • (2008) PLoS Genet , vol.4
    • Ozbudak, E.M.1    Lewis, J.2
  • 26
    • 53449089514 scopus 로고    scopus 로고
    • The vertebrate segmentation clock: The tip of the iceberg
    • Ozbudak, E. M. and Pourquié, O. (2008). The vertebrate segmentation clock: the tip of the iceberg. Curr. Opin. Genet. Dev. 18, 317-323.
    • (2008) Curr. Opin. Genet. Dev , vol.18 , pp. 317-323
    • Ozbudak, E.M.1    Pourquié, O.2
  • 28
    • 0842285841 scopus 로고    scopus 로고
    • Summing up the noise in gene networks
    • Paulsson, J. (2004). Summing up the noise in gene networks. Nature 427, 415-418.
    • (2004) Nature , vol.427 , pp. 415-418
    • Paulsson, J.1
  • 29
    • 79957580977 scopus 로고    scopus 로고
    • Vertebrate segmentation: From cyclic gene networks to scoliosis
    • Pourquié, O. (2011). Vertebrate segmentation: from cyclic gene networks to scoliosis. Cell 145, 650-663.
    • (2011) Cell , vol.145 , pp. 650-663
    • Pourquié, O.1
  • 30
    • 34848818078 scopus 로고    scopus 로고
    • Synchrony dynamics during initiation, failure, and rescue of the segmentation clock
    • Riedel-Kruse, I. H., Müller, C. and Oates, A. C. (2007). Synchrony dynamics during initiation, failure, and rescue of the segmentation clock. Science 317, 1911-1915.
    • (2007) Science , vol.317 , pp. 1911-1915
    • Riedel-Kruse, I.H.1    Müller, C.2    Oates, A.C.3
  • 31
    • 79957538412 scopus 로고    scopus 로고
    • Segment number and axial identity in a segmentation clock period mutant
    • Schröter, C. and Oates, A. C. (2010). Segment number and axial identity in a segmentation clock period mutant. Curr. Biol. 20, 1254-1258.
    • (2010) Curr. Biol , vol.20 , pp. 1254-1258
    • Schröter, C.1    Oates, A.C.2
  • 33
    • 34047139349 scopus 로고    scopus 로고
    • Completing the set of h/E(spl) cyclic genes in zebrafish: Her12 and her15 reveal novel modes of expression and contribute to the segmentation clock
    • Shankaran, S. S., Sieger, D., Schroter, C., Czepe, C., Pauly, M. C., Laplante, M. A., Becker, T. S., Oates, A. C. and Gajewski, M. (2007). Completing the set of h/E(spl) cyclic genes in zebrafish: her12 and her15 reveal novel modes of expression and contribute to the segmentation clock. Dev. Biol. 304, 615-632.
    • (2007) Dev. Biol , vol.304 , pp. 615-632
    • Shankaran, S.S.1    Sieger, D.2    Schroter, C.3    Czepe, C.4    Pauly, M.C.5    Laplante, M.A.6    Becker, T.S.7    Oates, A.C.8    Gajewski, M.9
  • 34
    • 33646035816 scopus 로고    scopus 로고
    • Her1 and her13.2 are jointly required for somitic border specification along the entire axis of the fish embryo
    • Sieger, D., Ackermann, B., Winkler, C., Tautz, D. and Gajewski, M. (2006). her1 and her13.2 are jointly required for somitic border specification along the entire axis of the fish embryo. Dev. Biol. 293, 242-251.
    • (2006) Dev. Biol , vol.293 , pp. 242-251
    • Sieger, D.1    Ackermann, B.2    Winkler, C.3    Tautz, D.4    Gajewski, M.5
  • 35
    • 84856719895 scopus 로고    scopus 로고
    • The Her7 node modulates the network topology of the zebrafish segmentation clock via sequestration of the Hes6 hub
    • Trofka, A., Schwendinger-Schreck, J., Brend, T., Pontius, W., Emonet, T. and Holley, S. A. (2012). The Her7 node modulates the network topology of the zebrafish segmentation clock via sequestration of the Hes6 hub. Development 139, 940-947.
    • (2012) Development , vol.139 , pp. 940-947
    • Trofka, A.1    Schwendinger-Schreck, J.2    Brend, T.3    Pontius, W.4    Emonet, T.5    Holley, S.A.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.