TIE-DYE: A combinatorial marking system to visualize and genetically manipulate clones during development in drosophila melanogaster

Development (Cambridge)

Volumn 140, Issue 15, 2013, Pages 3275-3284

  Worley, Melanie I ^a   Setiawan, Linda ^a   Hariharan, Iswar K ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Drosophila; Imaginal disc; Multicolor lineage technique

Indexed keywords

ANIMAL CELL; ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTICLE; BINDING AFFINITY; CELL GROWTH; CELL INTERACTION; CELL LINEAGE; CELL PROLIFERATION; CONTROLLED STUDY; DROSOPHILA MELANOGASTER; GENE OVEREXPRESSION; GENETIC MANIPULATION; IMAGE PROCESSING; IMMUNOHISTOCHEMISTRY; MOLECULAR CLONING; NONHUMAN; ORGANOGENESIS; PRIORITY JOURNAL; RNA INTERFERENCE;

DROSOPHILA; IMAGINAL DISC; MULTICOLOR LINEAGE TECHNIQUE;

ANIMALS; ANIMALS, GENETICALLY MODIFIED; BODY PATTERNING; CELL LINEAGE; CLONE CELLS; DROSOPHILA MELANOGASTER; DROSOPHILA PROTEINS; FEMALE; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENETIC TECHNIQUES; GREEN FLUORESCENT PROTEINS; IMAGINAL DISCS; LUMINESCENT PROTEINS; MALE; TRANSCRIPTION FACTORS; WING;

EID: 84880255813     PISSN: 09501991     EISSN: 14779129     Source Type: Journal    
DOI: 10.1242/dev.096057     Document Type: Article

References (66)

1. Affolter, M. and Basler, K. (2007). The Decapentaplegic morphogen gradient: from pattern formation to growth regulation. Nat. Rev. Genet. 8, 663-674.
2. Baena-López, L. A., Baonza, A. and García-Bellido, A. (2005). The orientation of cell divisions determines the shape of Drosophila organs. Curr. Biol. 15, 1640-1644.
3. Bate, M. and Arias, A. M. (1991). The embryonic origin of imaginal discs in Drosophila. Development 112, 755-761.
4. Bergantiños, C., Corominas, M. and Serras, F. (2010). Cell death-induced regeneration in wing imaginal discs requires JNK signalling. Development 137, 1169-1179.
5. Boedigheimer, M. and Laughon, A. (1993). Expanded: a gene involved in the control of cell proliferation in imaginal discs. Development 118, 1291-1301.
6. Bosch, M., Serras, F., Martín-Blanco, E. and Baguñà, J. (2005). JNK signaling pathway required for wound healing in regenerating Drosophila wing imaginal discs. Dev. Biol. 280, 73-86.
7. Boulina, M., Samarajeewa, H., Baker, J. D., Kim, M. D. and Chiba, A. (2013). Live imaging of multicolor-labeled cells in Drosophila. Development 140, 1605-1613.
8. Brand, A. H. and Perrimon, N. (1993). Targeted gene expression as a means of altering cell fates and generating dominant phenotypes. Development 118, 401-415.
9. Capdevila, J. and Guerrero, I. (1994). Targeted expression of the signaling molecule decapentaplegic induces pattern duplications and growth alterations in Drosophila wings. EMBO J. 13, 4459-4468.
10. Crick, F. H. and Lawrence, P. A. (1975). Compartments and polyclones in insect development. Science 189, 340-347.
11. del Valle Rodríguez, A., Didiano, D. and Desplan, C. (2012). Power tools for gene expression and clonal analysis in Drosophila. Nat. Methods 9, 47-55.
12. Eaton, S. and Kornberg, T. B. (1990). Repression of ci-D in posterior compartments of Drosophila by engrailed. Genes Dev. 4, 1068-1077.
13. Emery, G., Hutterer, A., Berdnik, D., Mayer, B., Wirtz-Peitz, F., Gaitan, M. G. and Knoblich, J. A. (2005). Asymmetric Rab 11 endosomes regulate delta recycling and specify cell fate in the Drosophila nervous system. Cell 122, 763-773.
14. Evans, C. J., Olson, J. M., Ngo, K. T., Kim, E., Lee, N. E., Kuoy, E., Patananan, A. N., Sitz, D., Tran, P., Do, M. T. et al. (2009). G-TRACE: rapid Gal4-based cell lineage analysis in Drosophila. Nat. Methods 6, 603-605.
15. Fain, M. J. and Stevens, B. (1982). Alterations in the cell cycle of Drosophila imaginal disc cells precede metamorphosis. Dev. Biol. 92, 247-258.
16. Fischer, J. A., Giniger, E., Maniatis, T. and Ptashne, M. (1988). GAL4 activates transcription in Drosophila. Nature 332, 853-856.
17. Garcia-Bellido, A. and Merriam, J. R. (1969). Cell lineage of the imaginal discs in Drosophila gynandromorphs. J. Exp. Zool. 170, 61-75.
18. Garcia-Bellido, A. and Merriam, J. R. (1971). Parameters of the wing imaginal disc development of Drosophila melanogaster. Dev. Biol. 24, 61-87.
19. Garcia-Bellido, A., Ripoll, P. and Morata, G. (1973). Developmental compartmentalisation of the wing disk of Drosophila. Nat. New Biol. 245, 251-253.
20. Golic, K. G. (1991). Site-specific recombination between homologous chromosomes in Drosophila. Science 252, 958-961.
21. Graves, B. J. and Schubiger, G. (1982). Cell cycle changes during growth and differentiation of imaginal leg discs in Drosophila melanogaster. Dev. Biol. 93, 104-110.
22. Griffin, R., Sustar, A., Bonvin, M., Binari, R., del Valle Rodriguez, A., Hohl, A. M., Bateman, J. R., Villalta, C., Heffern, E., Grunwald, D. et al. (2009). The twin spot generator for differential Drosophila lineage analysis. Nat. Methods 6, 600-602.
23. Gupta, V. and Poss, K. D. (2012). Clonally dominant cardiomyocytes direct heart morphogenesis. Nature 484, 479-484.
24. Hadjieconomou, D., Rotkopf, S., Alexandre, C., Bell, D. M., Dickson, B. J. and Salecker, I. (2011). Flybow: genetic multicolor cell labeling for neural circuit analysis in Drosophila melanogaster. Nat. Methods 8, 260-266.
25. Hadorn, E., Bertani, G. and Gallera, J. (1949). Regulative capacity and field organization of male genital discs in Drosophila melanogaster. Wilhelm Roux Arch. Entwickl. Mech. Org. 144, 31-70.
26. Halme, A., Cheng, M. and Hariharan, I. K. (2010). Retinoids regulate a developmental checkpoint for tissue regeneration in Drosophila. Curr. Biol. 20, 458-463.
27. Hampel, S., Chung, P., McKellar, C. E., Hall, D., Looger, L. L. and Simpson, J. H. (2011). Drosophila Brainbow: a recombinase-based fluorescence labeling technique to subdivide neural expression patterns. Nat. Methods 8, 253-259.
28. Huang, J., Wu, S., Barrera, J., Matthews, K. and Pan, D. (2005). The Hippo signaling pathway coordinately regulates cell proliferation and apoptosis by inactivating Yorkie, the Drosophila Homolog of YAP. Cell 122, 421-434.
29. Hussey, R. G., Thompson, W. R. and Calhoun, E. T. (1927). The Influence of XRays on the Development of Drosophila Larvae. Science 66, 65-66.
30. Jiang, J. and Hui, C. C. (2008). Hedgehog signaling in development and cancer. Dev. Cell 15, 801-812.
31. Johnston, L. A., Prober, D. A., Edgar, B. A., Eisenman, R. N. and Gallant, P. (1999). Drosophila myc regulates cellular growth during development. Cell 98, 779-790.
32. Knoblich, J. A., Sauer, K., Jones, L., Richardson, H., Saint, R. and Lehner, C. F. (1994). Cyclin E controls S phase progression and its down-regulation during Drosophila embryogenesis is required for the arrest of cell proliferation. Cell 77, 107-120.
33. Kretzschmar, K. and Watt, F. M. (2012). Lineage tracing. Cell 148, 33-45.
34. Lai, S. L. and Lee, T. (2006). Genetic mosaic with dual binary transcriptional systems in Drosophila. Nat. Neurosci. 9, 703-709.
35. Lawrence, P. A. and Struhl, G. (1996). Morphogens, compartments, and pattern: lessons from drosophila? Cell 85, 951-961.
36. Lawrence, P. A., Casal, J. and Struhl, G. (1999). Hedgehog and engrailed: pattern formation and polarity in the Drosophila abdomen. Development 126, 2431-2439.
37. Le Douarin, N. M. and Barq, G. (1969). [Use of Japanese quail cells as 'biological markers' in experimental embryology]. C.R. Hebd. Seances Acad. Sci., Ser. D, Sci. Nat. 269, 1543-1546.
38. Lee, T., Feig, L. and Montell, D. J. (1996). Two distinct roles for Ras in a developmentally regulated cell migration. Development 122, 409-418.
39. Lee, T., Winter, C., Marticke, S. S., Lee, A. and Luo, L. (2000). Essential roles of Drosophila RhoA in the regulation of neuroblast proliferation and dendritic but not axonal morphogenesis. Neuron 25, 307-316.
40. Livet, J., Weissman, T. A., Kang, H., Draft, R. W., Lu, J., Bennis, R. A., Sanes, J. R. and Lichtman, J. W. (2007). Transgenic strategies for combinatorial expression of fluorescent proteins in the nervous system. Nature 450, 56-62.
41. Mandaravally Madhavan, M. M. and Schneiderman, H. A. (1977). Histological analysis of the dynamics of growth of imaginal discs and histoblast nests during the larval development of drosophila melanogaster. Wilhelm Roux's Archives 183, 269-305.
42. Martín, F. A., Herrera, S. C. and Morata, G. (2009). Cell competition, growth and size control in the Drosophila wing imaginal disc. Development 136, 3747-3756.
43. Milán, M., Campuzano, S. and García-Bellido, A. (1996). Cell cycling and patterned cell proliferation in the Drosophila wing during metamorphosis. Proc. Natl. Acad. Sci. USA 93, 11687-11692.
44. Neufeld, T. P., de la Cruz, A. F., Johnston, L. A. and Edgar, B. A. (1998). Coordination of growth and cell division in the Drosophila wing. Cell 93, 1183-1193.
45. Oh, H. and Irvine, K. D. (2009). In vivo analysis of Yorkie phosphorylation sites. Oncogene 28, 1916-1927.
46. Orenic, T. V., Slusarski, D. C., Kroll, K. L. and Holmgren, R. A. (1990). Cloning and characterization of the segment polarity gene cubitus interruptus Dominant of Drosophila. Genes Dev. 4, 1053-1067.
47. Pignoni, F. and Zipursky, S. L. (1997). Induction of Drosophila eye development by decapentaplegic. Development 124, 271-278.
48. Potter, C. J., Tasic, B., Russler, E. V., Liang, L. and Luo, L. (2010). The Q system: a repressible binary system for transgene expression, lineage tracing, and mosaic analysis. Cell 141, 536-548.
49. Price, M. A. and Kalderon, D. (1999). Proteolysis of cubitus interruptus in Drosophila requires phosphorylation by protein kinase A. Development 126, 4331-4339.
50. Rogulja, D. and Irvine, K. D. (2005). Regulation of cell proliferation by a morphogen gradient. Cell 123, 449-461.
51. Schwartz, C., Locke, J., Nishida, C. and Kornberg, T. B. (1995). Analysis of cubitus interruptus regulation in Drosophila embryos and imaginal disks. Development 121, 1625-1635.
52. Serrano, N. and O'Farrell, P. H. (1997). Limb morphogenesis: connections between patterning and growth. Curr. Biol. 7, R186-R195.
53. Smith-Bolton, R. K., Worley, M. I., Kanda, H. and Hariharan, I. K. (2009). Regenerative growth in Drosophila imaginal discs is regulated by Wingless and Myc. Dev. Cell 16, 797-809.
54. Snippert, H. J., van der Flier, L. G., Sato, T., van Es, J. H., van den Born, M., Kroon-Veenboer, C., Barker, N., Klein, A. M., van Rheenen, J., Simons, B. D. et al. (2010). Intestinal crypt homeostasis results from neutral competition between symmetrically dividing Lgr5 stem cells. Cell 143, 134-144.
55. Staehling-Hampton, K. and Hoffmann, F. M. (1994). Ectopic decapentaplegic in the Drosophila midgut alters the expression of five homeotic genes, dpp, and wingless, causing specific morphological defects. Dev. Biol. 164, 502-512.
56. Struhl, G. and Basler, K. (1993). Organizing activity of wingless protein in Drosophila. Cell 72, 527-540.
57. Sturtevant, A. H. (1929). The claret mutant type of Drosophila simulans: a study of chromosome elimination and of cell-lineage. Z. Wiss. Zool. 135, 323-356.
58. Sustar, A., Bonvin, M., Schubiger, M. and Schubiger, G. (2011). Drosophila twin spot clones reveal cell division dynamics in regenerating imaginal discs. Dev. Biol. 356, 576-587.
59. Szüts, D. and Bienz, M. (2000). LexA chimeras reveal the function of Drosophila Fos as a context-dependent transcriptional activator. Proc. Natl. Acad. Sci. USA 97, 5351-5356.
60. Tabata, T., Schwartz, C., Gustavson, E., Ali, Z. and Kornberg, T. B. (1995). Creating a Drosophila wing de novo, the role of engrailed, and the compartment border hypothesis. Development 121, 3359-3369.
61. Weisblat, D. A., Sawyer, R. T. and Stent, G. S. (1978). Cell lineage analysis by intracellular injection of a tracer enzyme. Science 202, 1295-1298.
62. Worley, M. I., Setiawan, L. and Hariharan, I. K. (2012). Regeneration and transdetermination in Drosophila imaginal discs. Annu. Rev. Genet. 46, 289-310.
63. Xu, T. and Rubin, G. M. (1993). Analysis of genetic mosaics in developing and adult Drosophila tissues. Development 117, 1223-1237.
64. Yagi, R., Mayer, F. and Basler, K. (2010). Refined LexA transactivators and their use in combination with the Drosophila Gal4 system. Proc. Natl. Acad. Sci. USA 107, 16166-16171.
65. Yu, H. H., Chen, C. H., Shi, L., Huang, Y. and Lee, T. (2009). Twin-spot MARCM to reveal the developmental origin and identity of neurons. Nat. Neurosci. 12, 947-953.
66. Zecca, M., Basler, K. and Struhl, G. (1995). Sequential organizing activities of engrailed, hedgehog and decapentaplegic in the Drosophila wing. Development 121, 2265-2278.