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Volumn 54, Issue 7, 2013, Pages 1064-1078

The plant s1-like nuclease family has evolved a highly diverse range of catalytic capabilities

Author keywords

Arabidopsis thaliana; Gene family evolution; Metallonucleases; Nuclease I; Programmed cell death; S1 like nucleases

Indexed keywords

ARABIDOPSIS PROTEIN; CALCIUM; ENDO2 PROTEIN, ARABIDOPSIS; ENDONUCLEASE; ISOENZYME; MANGANESE; RNA; SINGLE STRANDED DNA; ZINC;

EID: 84880244372     PISSN: 00320781     EISSN: 14719053     Source Type: Journal    
DOI: 10.1093/pcp/pct061     Document Type: Article
Times cited : (31)

References (40)
  • 1
    • 0032511167 scopus 로고    scopus 로고
    • BEN1 and ZEN1 cDNAs encoding S1-type DNases that are associated with programmed cell death in plants
    • Aoyagi, S., Sugiyama, M. and Fukuda, H. (1998) BEN1 and ZEN1 cDNAs encoding S1-type DNases that are associated with programmed cell death in plants. FEBS Lett. 429: 134-8.
    • (1998) FEBS Lett. , vol.429 , pp. 134-138
    • Aoyagi, S.1    Sugiyama, M.2    Fukuda, H.3
  • 4
    • 23044439362 scopus 로고    scopus 로고
    • A versatile vector system for multiple gene expression in plants
    • Chung, S.M., Frankman, E.L. and Tzfira, T. (2005) A versatile vector system for multiple gene expression in plants. Trends Plant Sci. 10: 357-361.
    • (2005) Trends Plant Sci. , vol.10 , pp. 357-361
    • Chung, S.M.1    Frankman, E.L.2    Tzfira, T.3
  • 6
    • 0037264483 scopus 로고    scopus 로고
    • Single-strand-specific nucleases
    • Desai, N.A. and Shankar, V. (2003) Single-strand-specific nucleases. FEMS Microbiol. Rev. 26: 457-491.
    • (2003) FEMS Microbiol. Rev. , vol.26 , pp. 457-491
    • Desai, N.A.1    Shankar, V.2
  • 7
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • Edgar, R.C. (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32: 1792-1797.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 8
    • 82255194151 scopus 로고    scopus 로고
    • Localization of the Arabidopsis senescence-and cell death-associated BFN1 nuclease: From the ER to fragmented nuclei
    • Farage-Barhom, S., Burd, S., Sonego, L., Mett, A., Belausov, E., Gidoni, D. et al. (2011) Localization of the Arabidopsis senescence-and cell death-associated BFN1 nuclease: from the ER to fragmented nuclei. Mol. Plant 4: 1062-1073.
    • (2011) Mol. Plant , vol.4 , pp. 1062-1073
    • Farage-Barhom, S.1    Burd, S.2    Sonego, L.3    Mett, A.4    Belausov, E.5    Gidoni, D.6
  • 9
    • 51749100088 scopus 로고    scopus 로고
    • Expression analysis of the BFN1 nuclease gene promoter during senescence, abscission, and programmed cell death-related processes
    • Farage-Barhom, S., Burd, S., Sonego, L., Perl-Treves, R. and Lers, A. (2008) Expression analysis of the BFN1 nuclease gene promoter during senescence, abscission, and programmed cell death-related processes. J. Exp. Bot. 59: 3247-3258.
    • (2008) J. Exp. Bot. , vol.59 , pp. 3247-3258
    • Farage-Barhom, S.1    Burd, S.2    Sonego, L.3    Perl-Treves, R.4    Lers, A.5
  • 10
    • 0038386050 scopus 로고    scopus 로고
    • 3DJury: A simple approach to improve protein structure predictions
    • Ginalski, K., Elofsson, A., Fischer, D. and Rychlewski, L. (2003) 3DJury: a simple approach to improve protein structure predictions. Bioinformatics 19: 1015-1018.
    • (2003) Bioinformatics , vol.19 , pp. 1015-1018
    • Ginalski, K.1    Elofsson, A.2    Fischer, D.3    Rychlewski, L.4
  • 11
    • 14044270789 scopus 로고    scopus 로고
    • Transcriptional program controlled by the floral homeotic gene AGAMOUS during early organogenesis
    • Gómez-Mena, C., de Folter, S., Costa, M.M., Angenent, G.C. and Sablowski, R. (2005) Transcriptional program controlled by the floral homeotic gene AGAMOUS during early organogenesis. Development 132: 429-438.
    • (2005) Development , vol.132 , pp. 429-438
    • Gómez-Mena, C.1    De Folter, S.2    Costa, M.M.3    Angenent, G.C.4    Sablowski, R.5
  • 12
    • 77950806408 scopus 로고    scopus 로고
    • New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of PhyML 3.0
    • Guindon, S., Dufayard, J.F., Lefort, V., Anisimova, M., Hordijk, W. and Gascuel, O. (2010) New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst. Biol. 59: 307-321.
    • (2010) Syst. Biol. , vol.59 , pp. 307-321
    • Guindon, S.1    Dufayard, J.F.2    Lefort, V.3    Anisimova, M.4    Hordijk, W.5    Gascuel, O.6
  • 13
    • 79960228202 scopus 로고    scopus 로고
    • The role of vacuole in plant cell death
    • Hara-Nishimura, I. and Hatsugai, N. (2011) The role of vacuole in plant cell death. Cell Death Differ. 18: 1298-1304.
    • (2011) Cell Death Differ. , vol.18 , pp. 1298-1304
    • Hara-Nishimura, I.1    Hatsugai, N.2
  • 14
    • 0037339668 scopus 로고    scopus 로고
    • Nuclease activities and DNA fragmentation during programmed cell death of megagametophyte cells of white spruce (Picea glauca) seeds
    • He, X. and Kermode, A.R. (2003) Nuclease activities and DNA fragmentation during programmed cell death of megagametophyte cells of white spruce (Picea glauca) seeds. Plant Mol. Biol. 51: 509-521.
    • (2003) Plant Mol. Biol. , vol.51 , pp. 509-521
    • He, X.1    Kermode, A.R.2
  • 15
    • 58749109023 scopus 로고    scopus 로고
    • Genevestigator v3: A reference expression database for the meta-analysis of transcriptomes
    • Hruz, T., Laule, O., Szabo, G., Wessendorp, F., Bleuler, S., Oertle, L. et al. (2008) Genevestigator v3: a reference expression database for the meta-analysis of transcriptomes. Adv. Bioinformatics 2008: 420747.
    • (2008) Adv. Bioinformatics , vol.2008 , pp. 420747
    • Hruz, T.1    Laule, O.2    Szabo, G.3    Wessendorp, F.4    Bleuler, S.5    Oertle, L.6
  • 16
    • 84868007353 scopus 로고    scopus 로고
    • Dendroscope 3: An interactive tool for rooted phylogenetic trees and networks
    • Huson, D.H. and Scornavacca, C. (2012) Dendroscope 3: an interactive tool for rooted phylogenetic trees and networks. Syst. Biol. 61: 1061-1067.
    • (2012) Syst. Biol. , vol.61 , pp. 1061-1067
    • Huson, D.H.1    Scornavacca, C.2
  • 17
    • 0036915257 scopus 로고    scopus 로고
    • ZEN1 is a key enzyme in the degradation of nuclear DNA during programmed cell death of tracheary elements
    • Ito, J. and Fukuda, H. (2002) ZEN1 is a key enzyme in the degradation of nuclear DNA during programmed cell death of tracheary elements. Plant Cell 14: 3201-3211.
    • (2002) Plant Cell , vol.14 , pp. 3201-3211
    • Ito, J.1    Fukuda, H.2
  • 18
    • 0014429805 scopus 로고
    • Sugar-unspecific mung bean nuclease i
    • Johnson, P.H. and Laskowski, M. Sr. (1968) Sugar-unspecific mung bean nuclease I. J. Biol. Chem. 243: 3421-3424.
    • (1968) J. Biol. Chem. , vol.243 , pp. 3421-3424
    • Johnson, P.H.1    Laskowski, Sr.M.2
  • 19
    • 0014961405 scopus 로고
    • Mung bean nuclease I. II. Resistance of double stranded deoxyribonucleic acid and susceptibility of regions rich in adenosine and thymidine to enzymatic hydrolysis
    • Johnson, P.H. and Laskowski, M. Sr. (1970) Mung bean nuclease I. II. Resistance of double stranded deoxyribonucleic acid and susceptibility of regions rich in adenosine and thymidine to enzymatic hydrolysis. J. Biol. Chem. 245: 891-898.
    • (1970) J. Biol. Chem. , vol.245 , pp. 891-898
    • Johnson, P.H.1    Laskowski, Sr.M.2
  • 20
    • 84861439836 scopus 로고    scopus 로고
    • Arabidopsis ENDO2: Its catalytic role and requirement of N-glycosylation for function
    • Ko, C.Y., Lai, Y.L., Liu, W.Y., Lin, C.H., Chen, Y.T., Chen, L.F. et al. (2012) Arabidopsis ENDO2: its catalytic role and requirement of N-glycosylation for function. J. Agric. Food Chem. 60: 5169-5179.
    • (2012) J. Agric. Food Chem. , vol.60 , pp. 5169-5179
    • Ko, C.Y.1    Lai, Y.L.2    Liu, W.Y.3    Lin, C.H.4    Chen, Y.T.5    Chen, L.F.6
  • 21
    • 0034980981 scopus 로고    scopus 로고
    • The characterization of LeNUC1, a nuclease associated with leaf senescence of tomato
    • Lers, A., Lomaniec, E., Burd, S. and Khalchitski, A. (2001) The characterization of LeNUC1, a nuclease associated with leaf senescence of tomato. Physiol. Plant. 112: 176-182.
    • (2001) Physiol. Plant. , vol.112 , pp. 176-182
    • Lers, A.1    Lomaniec, E.2    Burd, S.3    Khalchitski, A.4
  • 22
    • 77955670733 scopus 로고    scopus 로고
    • Characterization of nucleases involved in seedling development of cauliflower
    • Lésniewicz, K., Pieńkowska, J. and Poreba, E. (2010) Characterization of nucleases involved in seedling development of cauliflower. J. Plant Physiol. 167: 1093-1100.
    • (2010) J. Plant Physiol. , vol.167 , pp. 1093-1100
    • Lésniewicz, K.1    Pieńkowska, J.2    Poreba, E.3
  • 24
    • 77955011838 scopus 로고    scopus 로고
    • Phosphate mono-and diesterase activities of the trinuclear zinc enzyme nuclease P1-insights from quantum chemical calculations
    • Liao, R.Z., Yu, J.G. and Himo, F. (2010) Phosphate mono-and diesterase activities of the trinuclear zinc enzyme nuclease P1-insights from quantum chemical calculations. Inorg. Chem. 49: 6883-6888.
    • (2010) Inorg. Chem. , vol.49 , pp. 6883-6888
    • Liao, R.Z.1    Yu, J.G.2    Himo, F.3
  • 25
    • 0000772314 scopus 로고
    • Nuclear magnetic resonance study of intracellular ph of plant cells cultivated in liquid medium
    • Martin, J.B., Bligny, R., Rebeille, F., Douce, R., Leguay, J.J., Mathieu, Y. et al. (1982) Nuclear magnetic resonance study of intracellular ph of plant cells cultivated in liquid medium. Plant Physiol. 70: 1156-1161.
    • (1982) Plant Physiol. , vol.70 , pp. 1156-1161
    • Martin, J.B.1    Bligny, R.2    Rebeille, F.3    Douce, R.4    Leguay, J.J.5    Mathieu, Y.6
  • 26
    • 0029411193 scopus 로고
    • Identification, characterization, and purification of a tobacco endonuclease activity induced upon hypersensitive response cell death
    • Mittler, R. and Lam, E. (1995) Identification, characterization, and purification of a tobacco endonuclease activity induced upon hypersensitive response cell death. Plant Cell 7: 1951-1962.
    • (1995) Plant Cell , vol.7 , pp. 1951-1962
    • Mittler, R.1    Lam, E.2
  • 29
    • 0029665560 scopus 로고    scopus 로고
    • Mn2+ can substitute for Ca2+ in causing catecholamine secretion but not for increasing tyrosine hydroxylase phosphoryl-ation in bovine adrenal chromaffin cells
    • Powis, D.A., O'Brien, K.J., Harrison, S.M., Jarvie, P.E. and Dunkley, P.R. (1996) Mn2+ can substitute for Ca2+ in causing catecholamine secretion but not for increasing tyrosine hydroxylase phosphoryl-ation in bovine adrenal chromaffin cells. Cell Calcium 19: 419-429.
    • (1996) Cell Calcium , vol.19 , pp. 419-429
    • Powis, D.A.1    O'Brien, K.J.2    Harrison, S.M.3    Jarvie, P.E.4    Dunkley, P.R.5
  • 30
    • 0031850427 scopus 로고    scopus 로고
    • Recognition of single-stranded DNA by nuclease P1: High resolution crystal structures of complexes with substrate analogs
    • Romier, C., Dominguez, R., Lahm, A., Dahl, O. and Suck, D. (1998) Recognition of single-stranded DNA by nuclease P1: high resolution crystal structures of complexes with substrate analogs. Proteins 32: 414-424.
    • (1998) Proteins , vol.32 , pp. 414-424
    • Romier, C.1    Dominguez, R.2    Lahm, A.3    Dahl, O.4    Suck, D.5
  • 31
    • 80855131540 scopus 로고    scopus 로고
    • Extracellular nucleases and extracellular DNA play important roles in Vibrio cholerae biofilm formation
    • Seper, A., Fengler, V.H., Roier, S., Wolinski, H., Kohlwein, S.D., Bishop, A.L. et al. (2011) Extracellular nucleases and extracellular DNA play important roles in Vibrio cholerae biofilm formation. Mol. Microbiol. 82: 1015-1037.
    • (2011) Mol. Microbiol. , vol.82 , pp. 1015-1037
    • Seper, A.1    Fengler, V.H.2    Roier, S.3    Wolinski, H.4    Kohlwein, S.D.5    Bishop, A.L.6
  • 33
    • 80053923336 scopus 로고    scopus 로고
    • Protein kinase signaling networks in plant innate immunity
    • Tena, G., Boudsocq, M. and Sheen, J. (2011) Protein kinase signaling networks in plant innate immunity. Curr. Opin. Plant Biol. 14: 519-529.
    • (2011) Curr. Opin. Plant Biol. , vol.14 , pp. 519-529
    • Tena, G.1    Boudsocq, M.2    Sheen, J.3
  • 34
    • 34247853619 scopus 로고
    • Identification and purification of a nuclease from Zinnia elegans L.: A potential molecular marker for xylogenesis
    • Thelen, M.P. and Northcote, D.H. (1989) Identification and purification of a nuclease from Zinnia elegans L.: a potential molecular marker for xylogenesis. Planta 179: 181-195.
    • (1989) Planta , vol.179 , pp. 181-195
    • Thelen, M.P.1    Northcote, D.H.2
  • 35
    • 34548482029 scopus 로고    scopus 로고
    • Characterization of Arabidopsis thaliana mismatch specific endonucleases: Application to mutation discovery by TILLING in pea
    • Triques, K., Sturbois, B., Gallais, S., Dalmais, M., Chauvin, S., Clepet, C. et al. (2007) Characterization of Arabidopsis thaliana mismatch specific endonucleases: application to mutation discovery by TILLING in pea. Plant J. 51: 1116-1125.
    • (2007) Plant J. , vol.51 , pp. 1116-1125
    • Triques, K.1    Sturbois, B.2    Gallais, S.3    Dalmais, M.4    Chauvin, S.5    Clepet, C.6
  • 36
    • 17844386362 scopus 로고    scopus 로고
    • PSAT vectors: A modular series of plasmids for autofluorescent protein tagging and expression of multiple genes in plants
    • Tzfira, T., Tian, G.W., Lacroix, B., Vyas, S., Li, J., Leitner-Dagan, Y. et al. (2005) pSAT vectors: a modular series of plasmids for autofluorescent protein tagging and expression of multiple genes in plants. Plant Mol. Biol. 57: 503-516.
    • (2005) Plant Mol. Biol. , vol.57 , pp. 503-516
    • Tzfira, T.1    Tian, G.W.2    Lacroix, B.3    Vyas, S.4    Li, J.5    Leitner-Dagan, Y.6
  • 39
    • 34447099171 scopus 로고    scopus 로고
    • Arabidopsis mesophyll protoplasts: A versatile cell system for transient gene expression analysis
    • Yoo, S.D., Cho, Y.H. and Sheen, J. (2007) Arabidopsis mesophyll protoplasts: a versatile cell system for transient gene expression analysis. Nat. Protoc. 2: 1565-1572.
    • (2007) Nat. Protoc. , vol.2 , pp. 1565-1572
    • Yoo, S.D.1    Cho, Y.H.2    Sheen, J.3
  • 40
    • 75949124969 scopus 로고    scopus 로고
    • Novel bifunctional nucleases, OmBBD and AtBBD1, are involved in abscisic acid-mediated callose deposition in Arabidopsis
    • You, M.K., Shin, H.Y., Kim, Y.J., Ok, S.H., Cho, S.K., Jeung, J.U. et al. (2010) Novel bifunctional nucleases, OmBBD and AtBBD1, are involved in abscisic acid-mediated callose deposition in Arabidopsis. Plant Physiol. 152: 1015-1029.
    • (2010) Plant Physiol. , vol.152 , pp. 1015-1029
    • You, M.K.1    Shin, H.Y.2    Kim, Y.J.3    Ok, S.H.4    Cho, S.K.5    Jeung, J.U.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.