-
1
-
-
0000148162
-
Regulation of chromosomally mediated multiple antibiotic resistance: the mar regulon
-
Alekshun MN & Levy SB (1997) Regulation of chromosomally mediated multiple antibiotic resistance: the mar regulon. Antimicrob Agents Chemother 41: 2067-2075.
-
(1997)
Antimicrob Agents Chemother
, vol.41
, pp. 2067-2075
-
-
Alekshun, M.N.1
Levy, S.B.2
-
2
-
-
0032792553
-
Alteration of the repressor activity of MarR, the negative regulator of the Escherichia coli marRAB locus, by multiple chemicals in vitro
-
Alekshun MN & Levy SB (1999) Alteration of the repressor activity of MarR, the negative regulator of the Escherichia coli marRAB locus, by multiple chemicals in vitro. J Bacteriol 181: 4669-4672.
-
(1999)
J Bacteriol
, vol.181
, pp. 4669-4672
-
-
Alekshun, M.N.1
Levy, S.B.2
-
3
-
-
31544450286
-
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection
-
Article no:
-
Baba T, Ara T, Hasegawa M et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol Syst Biol 2: Article no: 2006.0008.
-
(2006)
Mol Syst Biol
, vol.2
, pp. 20060008
-
-
Baba, T.1
Ara, T.2
Hasegawa, M.3
-
4
-
-
0036042505
-
Activation of the Escherichia coli nfnB gene by MarA through a highly divergent marbox in a class II promoter
-
Barbosa TM & Levy SB (2002) Activation of the Escherichia coli nfnB gene by MarA through a highly divergent marbox in a class II promoter. Mol Microbiol 45: 191-202.
-
(2002)
Mol Microbiol
, vol.45
, pp. 191-202
-
-
Barbosa, T.M.1
Levy, S.B.2
-
5
-
-
0024235788
-
marA locus causes decreased expression of OmpF porin in multiple-antibiotic-resistant (Mar) mutants of Escherichia coli
-
Cohen SP, McMurry LM & Levy SB (1988) marA locus causes decreased expression of OmpF porin in multiple-antibiotic-resistant (Mar) mutants of Escherichia coli. J Bacteriol 170: 5416-5422.
-
(1988)
J Bacteriol
, vol.170
, pp. 5416-5422
-
-
Cohen, S.P.1
McMurry, L.M.2
Levy, S.B.3
-
6
-
-
0027419613
-
Genetic and functional analysis of the multiple antibiotic resistance (mar) locus in Escherichia coli
-
Cohen SP, Hächler H & Levy SB (1993) Genetic and functional analysis of the multiple antibiotic resistance (mar) locus in Escherichia coli. J Bacteriol 175: 1484-1492.
-
(1993)
J Bacteriol
, vol.175
, pp. 1484-1492
-
-
Cohen, S.P.1
Hächler, H.2
Levy, S.B.3
-
7
-
-
48449106792
-
The Jpred 3 secondary structure prediction server
-
Web Server issue
-
Cole C, Barber JD & Barton GJ (2008) The Jpred 3 secondary structure prediction server. Nucleic Acids Res 36(Web Server issue): W197-W201. http://www.compbio.dundee.ac.uk/www-jpred/index.html.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Cole, C.1
Barber, J.D.2
Barton, G.J.3
-
8
-
-
0032933267
-
Simple version of "megaprimer" PCR for site-directed mutagenesis
-
Colosimo A, Xu Z, Novelli G, Dallapiccola B & Gruenert DC (1999) Simple version of "megaprimer" PCR for site-directed mutagenesis. Biotechniques 26: 870-873.
-
(1999)
Biotechniques
, vol.26
, pp. 870-873
-
-
Colosimo, A.1
Xu, Z.2
Novelli, G.3
Dallapiccola, B.4
Gruenert, D.C.5
-
9
-
-
0034612342
-
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
-
Datsenko KA & Wanner BL (2000) One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. P Natl Acad Sci USA 97: 6640-6645.
-
(2000)
P Natl Acad Sci USA
, vol.97
, pp. 6640-6645
-
-
Datsenko, K.A.1
Wanner, B.L.2
-
12
-
-
0011864425
-
Fusions of secreted proteins to alkaline phosphatase: an approach for studying protein secretion
-
Hoffman CS & Wright A (1985) Fusions of secreted proteins to alkaline phosphatase: an approach for studying protein secretion. P Natl Acad Sci USA 82: 5107-5111.
-
(1985)
P Natl Acad Sci USA
, vol.82
, pp. 5107-5111
-
-
Hoffman, C.S.1
Wright, A.2
-
13
-
-
84857454212
-
Detection of toxic lignin hydrolysate-related compounds using an inaA:luxCDABE fusion strain
-
Lee S & Mitchell RJ (2012) Detection of toxic lignin hydrolysate-related compounds using an inaA:luxCDABE fusion strain. J Biotechnol 157: 598-604.
-
(2012)
J Biotechnol
, vol.157
, pp. 598-604
-
-
Lee, S.1
Mitchell, R.J.2
-
14
-
-
68949110351
-
Efflux-mediated drug resistance in bacteria: an update
-
Li XZ & Nikaido H (2004) Efflux-mediated drug resistance in bacteria: an update. Drugs 69: 1555-1623.
-
(2004)
Drugs
, vol.69
, pp. 1555-1623
-
-
Li, X.Z.1
Nikaido, H.2
-
15
-
-
0033808986
-
Tagging exported proteins using Escherichia coli alkaline phosphatase gene fusions
-
Manoil C (2000) Tagging exported proteins using Escherichia coli alkaline phosphatase gene fusions. Methods Enzymol 326: 35-47.
-
(2000)
Methods Enzymol
, vol.326
, pp. 35-47
-
-
Manoil, C.1
-
16
-
-
0030664684
-
Fis, an accessorial factor for transcriptional activation of the mar (multiple antibiotic resistance) promoter of Escherichia coli in the presence of the activator MarA, SoxS, or Rob
-
Martin RG & Rosner JL (1997) Fis, an accessorial factor for transcriptional activation of the mar (multiple antibiotic resistance) promoter of Escherichia coli in the presence of the activator MarA, SoxS, or Rob. J Bacteriol 179: 7410-7419.
-
(1997)
J Bacteriol
, vol.179
, pp. 7410-7419
-
-
Martin, R.G.1
Rosner, J.L.2
-
17
-
-
0036016825
-
Genomics of the marA/soxS/rob regulon of Escherichia coli: identification of directly activated promoters by application of molecular genetics and informatics to microarray data
-
Martin RG & Rosner JL (2002) Genomics of the marA/soxS/rob regulon of Escherichia coli: identification of directly activated promoters by application of molecular genetics and informatics to microarray data. Mol Microbiol 44: 1611-1624.
-
(2002)
Mol Microbiol
, vol.44
, pp. 1611-1624
-
-
Martin, R.G.1
Rosner, J.L.2
-
18
-
-
0029029524
-
Regulation of the multiple antibiotic resistance (mar) regulon by marORA sequences in Escherichia coli
-
Martin RG, Nyantakyi PS & Rosner JL (1995) Regulation of the multiple antibiotic resistance (mar) regulon by marORA sequences in Escherichia coli. J Bacteriol 177: 4176-4178.
-
(1995)
J Bacteriol
, vol.177
, pp. 4176-4178
-
-
Martin, R.G.1
Nyantakyi, P.S.2
Rosner, J.L.3
-
19
-
-
0032746803
-
Structural requirements for marbox function in transcriptional activation of mar/sox/rob regulon promoters in Escherichia coli: sequence, orientation and spatial relationship to the core promoter
-
Martin RG, Gillette WK, Rhee S & Rosner JL (1999) Structural requirements for marbox function in transcriptional activation of mar/sox/rob regulon promoters in Escherichia coli: sequence, orientation and spatial relationship to the core promoter. Mol Microbiol 34: 431-441.
-
(1999)
Mol Microbiol
, vol.34
, pp. 431-441
-
-
Martin, R.G.1
Gillette, W.K.2
Rhee, S.3
Rosner, J.L.4
-
20
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
MFOLD
-
MFOLD (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31: 3406-3415.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3406-3415
-
-
-
21
-
-
13444309581
-
EchoBASE: an integrated post-genomic database for Escherichia coli
-
Database issue
-
Misra RV, Horler RS, Reindl W, Goryanin II & Thomas GH (2005) EchoBASE: an integrated post-genomic database for Escherichia coli. Nucleic Acids Res 33(Database issue): D329-D333. http://www.york.ac.uk/res/thomas/.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Misra, R.V.1
Horler, R.S.2
Reindl, W.3
Goryanin, I.I.4
Thomas, G.H.5
-
22
-
-
78650475398
-
Phenotypic landscape of a bacterial cell
-
Nichols RJ, Sen S, Choo YJ et al. (2011) Phenotypic landscape of a bacterial cell. Cell 144: 143-156.
-
(2011)
Cell
, vol.144
, pp. 143-156
-
-
Nichols, R.J.1
Sen, S.2
Choo, Y.J.3
-
23
-
-
0025815063
-
Localization and orientation of the VirD4 protein of Agrobacterium tumefaciens in the cell membrane
-
Okamoto S, Toyoda-Yamamoto A, Ito K, Takebe I & Machida Y (1991) Localization and orientation of the VirD4 protein of Agrobacterium tumefaciens in the cell membrane. Mol Gen Genet 228: 24-32.
-
(1991)
Mol Gen Genet
, vol.228
, pp. 24-32
-
-
Okamoto, S.1
Toyoda-Yamamoto, A.2
Ito, K.3
Takebe, I.4
Machida, Y.5
-
24
-
-
80053345905
-
SignalP 4.0: discriminating signal peptides from transmembrane regions
-
Petersen TN, Brunak S, Von Heijne G & Nielsen H (2011) SignalP 4.0: discriminating signal peptides from transmembrane regions. Nat Methods 8: 785-786. http://www.cbs.dtu.dk/services/SignalP.
-
(2011)
Nat Methods
, vol.8
, pp. 785-786
-
-
Petersen, T.N.1
Brunak, S.2
Von Heijne, G.3
Nielsen, H.4
-
25
-
-
0034977251
-
Genome-wide transcriptional profiling of the Escherichia coli responses to superoxide stress and sodium salicylate
-
Pomposiello PJ, Bennik MH & Demple B (2001) Genome-wide transcriptional profiling of the Escherichia coli responses to superoxide stress and sodium salicylate. J Bacteriol 183: 3890-3902.
-
(2001)
J Bacteriol
, vol.183
, pp. 3890-3902
-
-
Pomposiello, P.J.1
Bennik, M.H.2
Demple, B.3
-
26
-
-
84858077472
-
The Pfam protein families database
-
Database Issue
-
Punta M, Coggill PC, Eberhardt RY et al. (2012) The Pfam protein families database. Nucleic Acids Res 40 (Database Issue): D290-D301. http://pfam.sanger.ac.uk/family/PF13999.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Punta, M.1
Coggill, P.C.2
Eberhardt, R.Y.3
-
27
-
-
77951226924
-
Many chromosomal genes modulate MarA-mediated multidrug resistance in Escherichia coli
-
Ruiz C & Levy SB (2010) Many chromosomal genes modulate MarA-mediated multidrug resistance in Escherichia coli. Antimicrob Agents Chemother 54: 2125-2134.
-
(2010)
Antimicrob Agents Chemother
, vol.54
, pp. 2125-2134
-
-
Ruiz, C.1
Levy, S.B.2
-
28
-
-
0029025536
-
Characterization of MarR, the repressor of the multiple antibiotic resistance (mar) operon in Escherichia coli
-
Seoane AS & Levy SB (1995) Characterization of MarR, the repressor of the multiple antibiotic resistance (mar) operon in Escherichia coli. J Bacteriol 177: 3414-3419.
-
(1995)
J Bacteriol
, vol.177
, pp. 3414-3419
-
-
Seoane, A.S.1
Levy, S.B.2
-
29
-
-
78751473491
-
Novel members of the Cra regulon involved in carbon metabolism in Escherichia coli
-
Shimada T, Yamamoto K & Ishihama A (2011) Novel members of the Cra regulon involved in carbon metabolism in Escherichia coli. J Bacteriol 193: 649-659.
-
(2011)
J Bacteriol
, vol.193
, pp. 649-659
-
-
Shimada, T.1
Yamamoto, K.2
Ishihama, A.3
-
30
-
-
0029295437
-
The MarR repressor of the multiple antibiotic resistance (mar) operon in Escherichia coli: prototypic member of a family of bacterial regulatory proteins involved in sensing phenolic compounds
-
Sulavik MC, Gambino LF & Miller PF (1995) The MarR repressor of the multiple antibiotic resistance (mar) operon in Escherichia coli: prototypic member of a family of bacterial regulatory proteins involved in sensing phenolic compounds. Mol Med 1: 436-446.
-
(1995)
Mol Med
, vol.1
, pp. 436-446
-
-
Sulavik, M.C.1
Gambino, L.F.2
Miller, P.F.3
-
31
-
-
0019805210
-
An 'internal' signal sequence directs secretion and processing of proinsulin in bacteria
-
Talmadge K, Brosius J & Gilbert W (1981) An 'internal' signal sequence directs secretion and processing of proinsulin in bacteria. Nature 294: 176-178.
-
(1981)
Nature
, vol.294
, pp. 176-178
-
-
Talmadge, K.1
Brosius, J.2
Gilbert, W.3
-
32
-
-
0024462262
-
Construction, expression, and localization of a CycA:PhoA fusion protein in Rhodobacter sphaeroides and Escherichia coli
-
Varga AR & Kaplan S (1989) Construction, expression, and localization of a CycA:PhoA fusion protein in Rhodobacter sphaeroides and Escherichia coli. J Bacteriol 171: 5830-5839.
-
(1989)
J Bacteriol
, vol.171
, pp. 5830-5839
-
-
Varga, A.R.1
Kaplan, S.2
-
33
-
-
55449106416
-
Antibiotic stress, genetic response and altered permeability of E. coli
-
Viveiros M, Dupont M, Rodrigues L, Couto I, Davin-Regli A, Martins M, Pagès JM & Amaral L (2007) Antibiotic stress, genetic response and altered permeability of E. coli. PLoS ONE 2: e365.
-
(2007)
PLoS ONE
, vol.2
-
-
Viveiros, M.1
Dupont, M.2
Rodrigues, L.3
Couto, I.4
Davin-Regli, A.5
Martins, M.6
Pagès, J.M.7
Amaral, L.8
-
34
-
-
7444245668
-
Identification of the CRP regulon using in vitro and in vivo transcriptional profiling
-
Zheng D, Constantinidou C, Hobman JL & Minchin SD (2004) Identification of the CRP regulon using in vitro and in vivo transcriptional profiling. Nucleic Acids Res 32: 5874-5893.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 5874-5893
-
-
Zheng, D.1
Constantinidou, C.2
Hobman, J.L.3
Minchin, S.D.4
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