-
1
-
-
33746808398
-
Wnt/β-catenin signaling in development and disease
-
Clevers, H. (2006) Wnt/β-catenin signaling in development and disease. Cell 127, 469-480
-
(2006)
Cell
, vol.127
, pp. 469-480
-
-
Clevers, H.1
-
2
-
-
62849106337
-
β-Catenin hits chromatin: Regulation of Wnt target gene activation
-
Mosimann, C., Hausmann, G., and Basler, K. (2009) β-Catenin hits chromatin: regulation of Wnt target gene activation. Nat. Rev. Mol. Cell Biol. 10, 276-286
-
(2009)
Nat. Rev. Mol. Cell Biol.
, vol.10
, pp. 276-286
-
-
Mosimann, C.1
Hausmann, G.2
Basler, K.3
-
3
-
-
14544280757
-
Transcriptional regulation and the role of diverse coactivators in animal cells
-
Roeder, R. G. (2005) Transcriptional regulation and the role of diverse coactivators in animal cells. FEBS Lett. 579, 909-915
-
(2005)
FEBS Lett.
, vol.579
, pp. 909-915
-
-
Roeder, R.G.1
-
4
-
-
84864251887
-
Navigating the epigenetic landscape of pluripotent stem cells
-
Li, M., Liu, G.-H., and Belmonte, J. C. I. (2012) Navigating the epigenetic landscape of pluripotent stem cells. Nat. Rev. Mol. Cell Biol. 13, 524-535
-
(2012)
Nat. Rev. Mol. Cell Biol.
, vol.13
, pp. 524-535
-
-
Li, M.1
Liu, G.-H.2
Belmonte, J.C.I.3
-
5
-
-
33646070846
-
A bivalent chromatin structure marks key developmental genes in embryonic stem cells
-
Bernstein, B. E., Mikkelsen, T. S., Xie, X., Kamal, M., Huebert, D. J., Cuff, J., Fry, B., Meissner, A., Wernig, M., Plath, K., Jaenisch, R., Wagschal, A., Feil, R., Schreiber, S. L., and Lander, E. S. (2006) A bivalent chromatin structure marks key developmental genes in embryonic stem cells. Cell 125, 315-326
-
(2006)
Cell
, vol.125
, pp. 315-326
-
-
Bernstein, B.E.1
Mikkelsen, T.S.2
Xie, X.3
Kamal, M.4
Huebert, D.J.5
Cuff, J.6
Fry, B.7
Meissner, A.8
Wernig, M.9
Plath, K.10
Jaenisch, R.11
Wagschal, A.12
Feil, R.13
Schreiber, S.L.14
Lander, E.S.15
-
6
-
-
80053063127
-
Maintaining embryonic stem cell pluripotency with Wnt signaling
-
Sokol, S. Y. (2011) Maintaining embryonic stem cell pluripotency with Wnt signaling. Development 138, 4341-4350
-
(2011)
Development
, vol.138
, pp. 4341-4350
-
-
Sokol, S.Y.1
-
7
-
-
33645097331
-
Synergistic action of Wnt and LIF in maintaining pluripotency of mouse ES cells
-
Ogawa, K., Nishinakamura, R., Iwamatsu, Y., Shimosato, D., and Niwa, H. (2006) Synergistic action of Wnt and LIF in maintaining pluripotency of mouse ES cells. Biochem. Biophys. Res. Commun. 343, 159-166
-
(2006)
Biochem. Biophys. Res. Commun.
, vol.343
, pp. 159-166
-
-
Ogawa, K.1
Nishinakamura, R.2
Iwamatsu, Y.3
Shimosato, D.4
Niwa, H.5
-
8
-
-
4444371652
-
Temporal analysis of phosphotyrosine-dependent signaling networks by quantitative proteomics
-
DOI 10.1038/nbt1005
-
Blagoev, B., Ong, S.-E., Kratchmarova, I., and Mann, M. (2004) Temporal analysis of phosphotyrosine-dependent signaling networks by quantitative proteomics. Nat. Biotechnol. 22, 1139-1145 (Pubitemid 39166852)
-
(2004)
Nature Biotechnology
, vol.22
, Issue.9
, pp. 1139-1145
-
-
Blagoev, B.1
Ong, S.-E.2
Kratchmarova, I.3
Mann, M.4
-
9
-
-
34548178909
-
In-gel digestion for mass spectrometric characterization of proteins and proteomes
-
Shevchenko, A., Tomas, H., Havlis, J., Olsen, J. V., and Mann, M. (2007) In-gel digestion for mass spectrometric characterization of proteins and proteomes. Nat. Protoc. 1, 2856-2860
-
(2007)
Nat. Protoc.
, vol.1
, pp. 2856-2860
-
-
Shevchenko, A.1
Tomas, H.2
Havlis, J.3
Olsen, J.V.4
Mann, M.5
-
10
-
-
57449099865
-
MaxQuant enables high peptide identification rates, individualized p.P.B.-range mass accuracies and proteome-wide protein quantification
-
Cox, J., and Mann, M. (2008) MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification. Nat. Biotechnol. 26, 1367-1372
-
(2008)
Nat. Biotechnol.
, vol.26
, pp. 1367-1372
-
-
Cox, J.1
Mann, M.2
-
11
-
-
58349111875
-
AmiGO: Online access to ontology and annotation data
-
Carbon, S., Ireland, A., Mungall, C. J., Shu, S., Marshall, B., and Lewis, S. (2009) AmiGO: online access to ontology and annotation data. Bioinformatics 25, 288-289
-
(2009)
Bioinformatics
, vol.25
, pp. 288-289
-
-
Carbon, S.1
Ireland, A.2
Mungall, C.J.3
Shu, S.4
Marshall, B.5
Lewis, S.6
-
12
-
-
79960610118
-
REVIGO summarizes and visualizes long lists of Gene Ontology terms
-
Supek, F., Bošnjak, M., Škunca, N., and Šmuc, T. (2011) REVIGO summarizes and visualizes long lists of Gene Ontology terms. PLoS One 6, e21800
-
(2011)
PLoS One
, vol.6
-
-
Supek, F.1
Bošnjak, M.2
Škunca, N.3
Šmuc, T.4
-
13
-
-
28444445926
-
-
Development Core Team R Foundation for Statistical Computing, Vienna, Austria
-
Development Core Team (2005) R: A Language and Environment for Statistical Computing, R Foundation for Statistical Computing, Vienna, Austria
-
(2005)
R: A Language and Environment for Statistical Computing
-
-
-
14
-
-
84856962477
-
Enhancer decommissioning by LSD1 during embryonic stem cell differentiation
-
Whyte, W. A., Bilodeau, S., Orlando, D. A., Hoke, H. A., Frampton, G. M., Foster, C. T., Cowley, S. M., and Young, R. A. (2012) Enhancer decommissioning by LSD1 during embryonic stem cell differentiation. Nature 482, 221-225
-
(2012)
Nature
, vol.482
, pp. 221-225
-
-
Whyte, W.A.1
Bilodeau, S.2
Orlando, D.A.3
Hoke, H.A.4
Frampton, G.M.5
Foster, C.T.6
Cowley, S.M.7
Young, R.A.8
-
15
-
-
78651324347
-
The STRING database in 2011: Functional interaction networks of proteins, globally integrated and scored
-
Szklarczyk, D., Franceschini, A., Kuhn, M., Simonovic, M., Roth, A., Minguez, P., Doerks, T., Stark, M., Muller, J., Bork, P., Jensen, L. J., and Von Mering, C. (2011) The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored. Nucleic Acids Res. 39, D561-D568
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Szklarczyk, D.1
Franceschini, A.2
Kuhn, M.3
Simonovic, M.4
Roth, A.5
Minguez, P.6
Doerks, T.7
Stark, M.8
Muller, J.9
Bork, P.10
Jensen, L.J.11
Von Mering, C.12
-
16
-
-
0035034603
-
Inactivation of the β-catenin gene by Wnt1-Cre-mediated deletion results in dramatic brain malformation and failure of craniofacial development
-
Brault, V., Moore, R., Kutsch, S., Ishibashi, M., Rowitch, D. H., McMahon, A. P., Sommer, L., Boussadia, O., and Kemler, R. (2001) Inactivation of the (β)-catenin gene by Wnt1-Cre-mediated deletion results in dramatic brain malformation and failure of craniofacial development. Development 128, 1253-1264 (Pubitemid 32409648)
-
(2001)
Development
, vol.128
, Issue.8
, pp. 1253-1264
-
-
Brault, V.1
Moore, R.2
Kutsch, S.3
Ishibashi, M.4
Rowitch, D.H.5
McMahon, A.P.6
Sommer, L.7
Boussadia, O.8
Kemler, R.9
-
17
-
-
0031589555
-
Regulation of Cre recombinase activity by mutated estrogen receptor ligand-binding domains
-
DOI 10.1006/bbrc.1997.7124
-
Feil, R., Wagner, J., Metzger, D., and Chambon, P. (1997) Regulation of Cre recombinase activity by mutated estrogen receptor ligand-binding domains. Biochem. Biophys. Res. Commun. 237, 752-757 (Pubitemid 27434760)
-
(1997)
Biochemical and Biophysical Research Communications
, vol.237
, Issue.3
, pp. 752-757
-
-
Feil, R.1
Wagner, J.2
Metzger, D.3
Chambon, P.4
-
18
-
-
0024451982
-
The cytoplasmic domain of the cell adhesion molecule uvomorulin assoicates with three independent proteins structurally related in different species
-
Ozawa, M., Baribault, H., and Kemler, R. (1989) The cytoplasmic domain of the cell adhesion molecule uvomorulin associates with three independent proteins structurally related in different species. EMBO J. 8, 1711-1717 (Pubitemid 19273986)
-
(1989)
EMBO Journal
, vol.8
, Issue.6
, pp. 1711-1717
-
-
Ozawa, M.1
Barbault, H.2
Kemler, R.3
-
19
-
-
25144525014
-
Core transcriptional regulatory circuitry in human embryonic stem cells
-
DOI 10.1016/j.cell.2005.08.020, PII S0092867405008251
-
Boyer, L. A., Lee, T. I., Cole, M. F., Johnstone, S. E., Levine, S. S., Zucker, J. P., Guenther, M. G., Kumar, R. M., Murray, H. L., Jenner, R. G., Gifford, D. K., Melton, D. A., Jaenisch, R., and Young, R. A. (2005) Core transcriptional regulatory circuitry in human embryonic stem cells. Cell 122, 947-956 (Pubitemid 41345211)
-
(2005)
Cell
, vol.122
, Issue.6
, pp. 947-956
-
-
Boyer, L.A.1
Tong, I.L.2
Cole, M.F.3
Johnstone, S.E.4
Levine, S.S.5
Zucker, J.P.6
Guenther, M.G.7
Kumar, R.M.8
Murray, H.L.9
Jenner, R.G.10
Gifford, D.K.11
Melton, D.A.12
Jaenisch, R.13
Young, R.A.14
-
20
-
-
0032582513
-
Formation of pluripotent stem cells in the mammalian embryo depends on the POU transcription factor Oct4
-
DOI 10.1016/S0092-8674(00)81769-9
-
Nichols, J., Zevnik, B., Anastassiadis, K., Niwa, H., Klewe-Nebenius, D., Chambers, I., Schöler, H., and Smith, A. (1998) Formation of pluripotent stem cells in the mammalian embryo depends on the POU transcription factor Oct4. Cell 95, 379-391 (Pubitemid 28507326)
-
(1998)
Cell
, vol.95
, Issue.3
, pp. 379-391
-
-
Nichols, J.1
Zevnik, B.2
Anastassiadis, K.3
Niwa, H.4
Klewe-Nebenius, D.5
Chambers, I.6
Scholer, H.7
Smith, A.8
-
21
-
-
1442311693
-
Oct-4 Knockdown Induces Similar Patterns of Endoderm and Trophoblast Differentiation Markers in Human and Mouse Embryonic Stem Cells
-
Hay, D. C., Sutherland, L., Clark, J., and Burdon, T. (2004) Oct-4 knockdown induces similar patterns of endoderm and trophoblast differentiation markers in human and mouse embryonic stem cells. Stem Cells 22, 225-235 (Pubitemid 38282637)
-
(2004)
Stem Cells
, vol.22
, Issue.2
, pp. 225-235
-
-
Hay, D.C.1
Sutherland, L.2
Clark, J.3
Burdon, T.4
-
22
-
-
0019882247
-
Nuclear envelope proteins: Identification of lamin B subtypes
-
Shelton, K. R., Egle, P. M., and Cochran, D. L. (1981) Nuclear envelope proteins: identification of lamin B subtypes. Biochem. Biophys. Res. Commun. 103, 975-981
-
(1981)
Biochem. Biophys. Res. Commun.
, vol.103
, pp. 975-981
-
-
Shelton, K.R.1
Egle, P.M.2
Cochran, D.L.3
-
23
-
-
0032411641
-
Pontin52, an interaction partner of β-catenin, binds to the TATA box binding protein
-
DOI 10.1073/pnas.95.25.14787
-
Bauer, A., Huber, O., and Kemler, R. (1998) Pontin52, an interaction partner of β-catenin, binds to the TATA box binding protein. Proc. Natl. Acad. Sci. U.S.A. 95, 14787-14792 (Pubitemid 29003708)
-
(1998)
Proceedings of the National Academy of Sciences of the United States of America
, vol.95
, Issue.25
, pp. 14787-14792
-
-
Bauer, A.1
Huber, O.2
Kemler, R.3
-
24
-
-
0034669058
-
Pontin52 and Reptin52 function as antagonistic regulators of β-catenin signalling activity
-
Bauer, A., Chauvet, S., Huber, O., Usseglio, F., Rothbächer, U., Aragnol, D., Kemler, R., and Pradel, J. (2000) Pontin52 and Reptin52 function as antagonistic regulators of β-catenin signalling activity. EMBO J. 19, 6121-6130
-
(2000)
EMBO J.
, vol.19
, pp. 6121-6130
-
-
Bauer, A.1
Chauvet, S.2
Huber, O.3
Usseglio, F.4
Rothbächer, U.5
Aragnol, D.6
Kemler, R.7
Pradel, J.8
-
25
-
-
84866478641
-
Differential requirements for β-catenin during mouse development
-
Rudloff, S., and Kemler, R. (2012) Differential requirements for β-catenin during mouse development. Development 139, 3711-3721
-
(2012)
Development
, vol.139
, pp. 3711-3721
-
-
Rudloff, S.1
Kemler, R.2
-
26
-
-
33751092246
-
A protein interaction network for pluripotency of embryonic stem cells
-
DOI 10.1038/nature05284, PII NATURE05284
-
Wang, J., Rao, S., Chu, J., Shen, X., Levasseur, D. N., Theunissen, T. W., and Orkin, S. H. (2006) A protein interaction network for pluripotency of embryonic stem cells. Nature 444, 364-368 (Pubitemid 44764111)
-
(2006)
Nature
, vol.444
, Issue.7117
, pp. 364-368
-
-
Wang, J.1
Rao, S.2
Chu, J.3
Shen, X.4
Levasseur, D.N.5
Theunissen, T.W.6
Orkin, S.H.7
-
27
-
-
33750823408
-
Murine inner cell mass-derived lineages depend on Sall4 function
-
DOI 10.1073/pnas.0607884103
-
Elling, U., Klasen, C., Eisenberger, T., Anlag, K., and Treier, M. (2006) Murine inner cell mass-derived lineages depend on Sall4 function. Proc. Natl. Acad. Sci. U.S.A. 103, 16319-16324 (Pubitemid 44715194)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.44
, pp. 16319-16324
-
-
Elling, U.1
Klasen, C.2
Eisenberger, T.3
Anlag, K.4
Treier, M.5
-
28
-
-
33747747661
-
Sall4 interacts with Nanog and co-occupies Nanog genomic sites in embryonic stem cells
-
DOI 10.1074/jbc.C600122200
-
Wu, Q., Chen, X., Zhang, J., Loh, Y.-H., Low, T.-Y., Zhang, W., Zhang, W., Sze, S.-K., Lim, B., and Ng, H.-H. (2006) Sall4 interacts with Nanog and co-occupies Nanog genomic sites in embryonic stem cells. J. Biol. Chem. 281, 24090-24094 (Pubitemid 44274183)
-
(2006)
Journal of Biological Chemistry
, vol.281
, Issue.34
, pp. 24090-24094
-
-
Wu, Q.1
Chen, X.2
Zhang, J.3
Loh, Y.-H.4
Low, T.-Y.5
Zhang, W.6
Zhang, W.7
Sze, S.-K.8
Lim, B.9
Ng, H.-H.10
-
29
-
-
33747730205
-
The murine homolog of SALL4, a causative gene in Okihiro syndrome, is essential for embryonic stem cell proliferation, and cooperates with Sall1 in anorectal, heart, brain and kidney development
-
DOI 10.1242/dev.02457
-
Sakaki-Yumoto, M., Kobayashi, C., Sato, A., Fujimura, S., Matsumoto, Y., Takasato, M., Kodama, T., Aburatani, H., Asashima, M., Yoshida, N., and Nishinakamura, R. (2006) The murine homolog of SALL4, a causative gene in Okihiro syndrome, is essential for embryonic stem cell proliferation, and cooperates with Sall1 in anorectal, heart, brain and kidney development. Development 133, 3005-3013 (Pubitemid 44314277)
-
(2006)
Development
, vol.133
, Issue.15
, pp. 3005-3013
-
-
Sakaki-Yumoto, M.1
Kobayashi, C.2
Sato, A.3
Fujimura, S.4
Matsumoto, Y.5
Takasato, M.6
Kodama, T.7
Aburatami, H.8
Asashima, M.9
Yoshida, N.10
Nishinakamura, R.11
-
30
-
-
33749173803
-
Sall4 modulates embryonic stem cell pluripotency and early embryonic development by the transcriptional regulation of Pou5f1
-
DOI 10.1038/ncb1481, PII NCB1481
-
Zhang, J., Tam, W.-L., Tong, G. Q., Wu, Q., Chan, H.-Y., Soh, B.-S., Lou, Y., Yang, J., Ma, Y., Chai, L., Ng, H.-H., Lufkin, T., Robson, P., and Lim, B. (2006) Sall4 modulates embryonic stem cell pluripotency and early embryonic development by the transcriptional regulation of Pou5f1. Nat. Cell Biol. 8, 1114-1123 (Pubitemid 44473607)
-
(2006)
Nature Cell Biology
, vol.8
, Issue.10
, pp. 1114-1123
-
-
Zhang, J.1
Tam, W.-L.2
Tong, G.Q.3
Wu, Q.4
Chan, H.-Y.5
Soh, B.-S.6
Lou, Y.7
Yang, J.8
Ma, Y.9
Chai, L.10
Ng, H.-H.11
Lufkin, T.12
Robson, P.13
Lim, B.14
-
31
-
-
11144332565
-
Histone demethylation mediated by the nuclear amine oxidase homolog LSD1
-
DOI 10.1016/j.cell.2004.12.012, PII S0092867404011997
-
Shi, Y., Lan, F., Matson, C., Mulligan, P., Whetstine, J. R., Cole, P. A., Casero, R. A., and Shi, Y. (2004) Histone demethylation mediated by the nuclear amine oxidase homolog LSD1. Cell 119, 941-953 (Pubitemid 40037608)
-
(2004)
Cell
, vol.119
, Issue.7
, pp. 941-953
-
-
Shi, Y.1
Lan, F.2
Matson, C.3
Mulligan, P.4
Whetstine, J.R.5
Cole, P.A.6
Casero, R.A.7
Shi, Y.8
-
32
-
-
24144462170
-
LSD1 demethylates repressive histone marks to promote androgen-receptor- dependent transcription
-
DOI 10.1038/nature04020, PII N04020
-
Metzger, E., Wissmann, M., Yin, N., Müller, J. M., Schneider, R., Peters, A. H. F. M., Günther, T., Buettner, R., and Schüle, R. (2005) LSD1 demethylates repressive histone marks to promote androgen-receptor- dependent transcription. Nature 437, 436-439 (Pubitemid 41613508)
-
(2005)
Nature
, vol.437
, Issue.7057
, pp. 436-439
-
-
Metzger, E.1
Wissmann, M.2
Yin, N.3
Muller, J.M.4
Schneider, R.5
Peters, A.H.F.M.6
Gunther, T.7
Buettner, R.8
Schule, R.9
-
33
-
-
58149156264
-
The lysine demethylase LSD1 (KDM1) is required for maintenance of global DNA methylation
-
Wang, J., Hevi, S., Kurash, J. K., Lei, H., Gay, F., Bajko, J., Su, H., Sun, W., Chang, H., Xu, G., Gaudet, F., Li, E., and Chen, T. (2008) The lysine demethylase LSD1 (KDM1) is required for maintenance of global DNA methylation. Nat. Genet. 41, 125-129
-
(2008)
Nat. Genet.
, vol.41
, pp. 125-129
-
-
Wang, J.1
Hevi, S.2
Kurash, J.K.3
Lei, H.4
Gay, F.5
Bajko, J.6
Su, H.7
Sun, W.8
Chang, H.9
Xu, G.10
Gaudet, F.11
Li, E.12
Chen, T.13
-
34
-
-
78049357469
-
Lysine-specific demethylase 1 regulates the embryonic transcriptome and CoREST stability
-
Foster, C. T., Dovey, O. M., Lezina, L., Luo, J. L., Gant, T. W., Barlev, N., Bradley, A., and Cowley, S. M. (2010) Lysine-specific demethylase 1 regulates the embryonic transcriptome and CoREST stability. Mol. Cell. Biol. 30, 4851-4863
-
(2010)
Mol. Cell. Biol.
, vol.30
, pp. 4851-4863
-
-
Foster, C.T.1
Dovey, O.M.2
Lezina, L.3
Luo, J.L.4
Gant, T.W.5
Barlev, N.6
Bradley, A.7
Cowley, S.M.8
-
35
-
-
0036255761
-
Protein detection using proximity-dependent DNA ligation assays
-
DOI 10.1038/nbt0502-473
-
Fredriksson, S., Gullberg, M., Jarvius, J., Olsson, C., Pietras, K., Gústafsdóttir, S. M., Östman, A., and Landegren, U. (2002) Protein detection using proximity-dependent DNA ligation assays. Nat. Biotechnol. 20, 473-477 (Pubitemid 34495933)
-
(2002)
Nature Biotechnology
, vol.20
, Issue.5
, pp. 473-477
-
-
Fredriksson, S.1
Gullberg, M.2
Jarvius, J.3
Olsson, C.4
Pietras, K.5
Gustafsdottir, S.M.6
Ostman, A.7
Landegren, U.8
-
36
-
-
48049110299
-
Characterizing proteins and their interactions in cells and tissues using the in situ proximity ligation assay
-
Söderberg, O., Leuchowius, K.-J., Gullberg, M., Jarvius, M., Weibrecht, I., Larsson, L.-G., and Landegren, U. (2008) Characterizing proteins and their interactions in cells and tissues using the in situ proximity ligation assay. Methods 45, 227-232
-
(2008)
Methods
, vol.45
, pp. 227-232
-
-
Söderberg, O.1
Leuchowius, K.-J.2
Gullberg, M.3
Jarvius, M.4
Weibrecht, I.5
Larsson, L.-G.6
Landegren, U.7
-
37
-
-
2942597634
-
Cytokine detection by antibody-based proximity ligation
-
DOI 10.1073/pnas.0400552101
-
Gullberg, M., Gústafsdóttir, S. M., Schallmeiner, E., Jarvius, J., Bjarnegård, M., Betsholtz, C., Landegren, U., and Fredriksson, S. (2004) Cytokine detection by antibody-based proximity ligation. Proc. Natl. Acad. Sci. U.S.A. 101, 8420-8424 (Pubitemid 38736590)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.22
, pp. 8420-8424
-
-
Gullberg, M.1
Gustafsdottir, S.M.2
Schallmeiner, E.3
Jarvius, J.4
Bjarnegard, M.5
Betsholtz, C.6
Landegren, U.7
Fredriksson, S.8
-
38
-
-
84862617605
-
Wnt/β-catenin signaling regulates telomerase in stem cells and cancer cells
-
Hoffmeyer, K., Raggioli, A., Rudloff, S., Anton, R., Hierholzer, A., Valle, I. D., Hein, K., Vogt, R., and Kemler, R. (2012) Wnt/β-catenin signaling regulates telomerase in stem cells and cancer cells. Science 336, 1549-1554
-
(2012)
Science
, vol.336
, pp. 1549-1554
-
-
Hoffmeyer, K.1
Raggioli, A.2
Rudloff, S.3
Anton, R.4
Hierholzer, A.5
Valle, I.D.6
Hein, K.7
Vogt, R.8
Kemler, R.9
-
39
-
-
70349731729
-
Chromatin protein HMGB2 regulates articular cartilage surface maintenance via β-catenin pathway
-
Taniguchi, N., Caramés, B., Kawakami, Y., Amendt, B. A., Komiya, S., and Lotz, M. (2009) Chromatin protein HMGB2 regulates articular cartilage surface maintenance via β-catenin pathway. Proc. Natl. Acad. Sci. U.S.A. 106, 16817-16822
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 16817-16822
-
-
Taniguchi, N.1
Caramés, B.2
Kawakami, Y.3
Amendt, B.A.4
Komiya, S.5
Lotz, M.6
-
40
-
-
0033554438
-
DNA bending induced by high mobility group proteins studied by fluorescence resonance energy transfer
-
Lorenz, M., Hillisch, A., Payet, D., Buttinelli, M., Travers, A., and Diekmann, S. (1999) DNA bending induced by high mobility group proteins studied by fluorescence resonance energy transfer. Biochemistry 38, 12150-12158
-
(1999)
Biochemistry
, vol.38
, pp. 12150-12158
-
-
Lorenz, M.1
Hillisch, A.2
Payet, D.3
Buttinelli, M.4
Travers, A.5
Diekmann, S.6
-
41
-
-
0031826698
-
High-mobility group chromatin proteins 1 and 2 functionally interact with steroid hormone receptors to enhance their DNA binding in vitro and transcriptional activity in mammalian cells
-
Boonyaratanakornkit, V., Melvin, V., Prendergast, P., Altmann, M., Ronfani, L., Bianchi, M. E., Taraseviciene, L., Nordeen, S. K., Allegretto, E. A., and Edwards, D. P. (1998) High-mobility group chromatin proteins 1 and 2 functionally interact with steroid hormone receptors to enhance their DNA binding in vitro and transcriptional activity in mammalian cells. Mol. Cell. Biol. 18, 4471-4487 (Pubitemid 28343032)
-
(1998)
Molecular and Cellular Biology
, vol.18
, Issue.8
, pp. 4471-4487
-
-
Boonyaratanakornkit, V.1
Melvin, V.2
Prendergast, P.3
Altmann, M.4
Ronfani, L.5
Bianchi, M.E.6
Taraseviciene, L.7
Nordeen, S.K.8
Allegretto, E.A.9
Edwards, D.P.10
-
42
-
-
0036510750
-
HMGB1 and HMGB2 cell-specifically down-regulate the p53- and p73-dependent sequence-specific transactivation from the human Bax gene promoter
-
DOI 10.1074/jbc.M110233200
-
Stros, M., Ozaki, T., Bacikova, A., Kageyama, H., and Nakagawara, A. (2002) HMGB1 and HMGB2 cell-specifically down-regulate the p53- and p73-dependent sequence-specific transactivation from the human Bax gene promoter. J. Biol. Chem. 277, 7157-7164 (Pubitemid 34953105)
-
(2002)
Journal of Biological Chemistry
, vol.277
, Issue.9
, pp. 7157-7164
-
-
Michaltros1
Ozaki, T.2
Bacikova, A.3
Kageyama, H.4
Nakagawara, A.5
-
43
-
-
0027216519
-
The nonspecific DNA-binding and -bending proteins HMG1 and HMG2 promote the assembly of complex nucleoprotein structures
-
Paull, T. T., Haykinson, M. J., and Johnson, R. C. (1993) The nonspecific DNA-binding and -bending proteins HMG1 and HMG2 promote the assembly of complex nucleoprotein structures. Genes Dev. 7, 1521-1534 (Pubitemid 23234346)
-
(1993)
Genes and Development
, vol.7
, Issue.8
, pp. 1521-1534
-
-
Paull, T.T.1
Haykinson, M.J.2
Johnson, R.C.3
-
44
-
-
33749624178
-
Klf4 cooperates with Oct3/4 and Sox2 to activate the Lefty1 core promoter in embryonic stem cells
-
DOI 10.1128/MCB.00468-06
-
Nakatake, Y., Fukui, N., Iwamatsu, Y., Masui, S., Takahashi, K., Yagi, R., Yagi, K., Miyazaki, J., Matoba, R., Ko, M. S. H., and Niwa, H. (2006) Klf4 cooperates with Oct3/4 and Sox2 to activate the Lefty1 core promoter in embryonic stem cells. Mol. Cell. Biol. 26, 7772-7782 (Pubitemid 44547722)
-
(2006)
Molecular and Cellular Biology
, vol.26
, Issue.20
, pp. 7772-7782
-
-
Nakatake, Y.1
Fukui, N.2
Iwamatsu, Y.3
Masui, S.4
Takahashi, K.5
Yagi, R.6
Yagi, K.7
Miyazaki, J.-I.8
Matoba, R.9
Ko, M.S.H.10
Niwa, H.11
-
45
-
-
0030072678
-
Identification of putative downstream genes of Oct-3, a pluripotent cell-specific transcription factor
-
Saijoh, Y., Fujii, H., Meno, C., Sato, M., Hirota, Y., Nagamatsu, S., Ikeda, M., and Hamada, H. (1996) Identification of putative downstream genes of Oct-3, a pluripotent cell-specific transcription factor. Genes Cells 1, 239-252 (Pubitemid 126673121)
-
(1996)
Genes to Cells
, vol.1
, Issue.2
, pp. 239-252
-
-
Saijoh, Y.1
Fujii, H.2
Meno, C.3
Sato, M.4
Hirota, Y.5
Nagamatsu, S.6
Ikeda, M.7
Hamada, H.8
-
46
-
-
0033197552
-
Mouse lefty2 and zebrafish antivin are feedback inhibitors of nodal signaling during vertebrate gastrulation
-
DOI 10.1016/S1097-2765(00)80331-7
-
Meno, C., Gritsman, K., Ohishi, S., Ohfuji, Y., Heckscher, E., Mochida, K., Shimono, A., Kondoh, H., Talbot, W. S., Robertson, E. J., Schier, A. F., and Hamada, H. (1999) Mouse Lefty2 and zebrafish Antivin are feedback inhibitors of nodal signaling during vertebrate gastrulation. Mol. Cell 4, 287-298 (Pubitemid 29499782)
-
(1999)
Molecular Cell
, vol.4
, Issue.3
, pp. 287-298
-
-
Meno, C.1
Gritsman, K.2
Ohishi, S.3
Ohfuji, Y.4
Heckscher, E.5
Mochida, K.6
Shimono, A.7
Kondoh, H.8
Talbot, W.S.9
Robertson, E.J.10
Schier, A.F.11
Hamada, H.12
-
47
-
-
0032493876
-
lefty-1 is required for left-right determination as a regulator of lefty-2 and nodal
-
DOI 10.1016/S0092-8674(00)81472-5
-
Meno, C., Shimono, A., Saijoh, Y., Yashiro, K., Mochida, K., Ohishi, S., Noji, S., Kondoh, H., and Hamada, H. (1998) Lefty-1 is required for left-right determination as a regulator of lefty-2 and nodal. Cell 94, 287-297 (Pubitemid 28376073)
-
(1998)
Cell
, vol.94
, Issue.3
, pp. 287-297
-
-
Meno, C.1
Shimono, A.2
Saijoh, Y.3
Yashiro, K.4
Mochida, K.5
Ohishi, S.6
Noji, S.7
Kondoh, H.8
Hamada, H.9
-
48
-
-
0036170533
-
Phenotypic complementation establishes requirements for specific POU domain and generic transactivation function of Oct-3/4 in embryonic stem cells
-
DOI 10.1128/MCB.22.5.1526-1536.2002
-
Niwa, H., Masui, S., Chambers, I., Smith, A. G., and Miyazaki, J. (2002) Phenotypic complementation establishes requirements for specific POU domain and generic transactivation function of Oct-3/4 in embryonic stem cells. Mol. Cell. Biol. 22, 1526-1536 (Pubitemid 34150788)
-
(2002)
Molecular and Cellular Biology
, vol.22
, Issue.5
, pp. 1526-1536
-
-
Niwa, H.1
Masui, S.2
Chambers, I.3
Smith, A.G.4
Miyazaki, J.-I.5
-
49
-
-
84863717210
-
Transforming growth factor β and Ras/MEK/ERK signaling regulate the expression level of a novel tumor suppressor Lefty
-
Miyata, N., Azuma, T., Hozawa, S., Higuchi, H., Yokoyama, A., Kabashima, A., Igarashi, T., Saeki, K., and Hibi, T. (2012) Transforming growth factor β and Ras/MEK/ERK signaling regulate the expression level of a novel tumor suppressor Lefty. Pancreas 41, 745-752
-
(2012)
Pancreas
, vol.41
, pp. 745-752
-
-
Miyata, N.1
Azuma, T.2
Hozawa, S.3
Higuchi, H.4
Yokoyama, A.5
Kabashima, A.6
Igarashi, T.7
Saeki, K.8
Hibi, T.9
-
50
-
-
60849121964
-
Combined gene expression analysis of whole-tissue and microdissected pancreatic ductal adenocarcinoma identifies genes specifically overexpressed in tumor epithelia
-
Badea, L., Herlea, V., Dima, S. O., Dumitrascu, T., and Popescu, I. (2008) Combined gene expression analysis of whole-tissue and microdissected pancreatic ductal adenocarcinoma identifies genes specifically overexpressed in tumor epithelia. Hepatogastroenterology 55, 2016-2027
-
(2008)
Hepatogastroenterology
, vol.55
, pp. 2016-2027
-
-
Badea, L.1
Herlea, V.2
Dima, S.O.3
Dumitrascu, T.4
Popescu, I.5
-
51
-
-
77950867131
-
Gene expression in histologically normal epithelium from breast cancer patients and from cancer-free prophylactic mastectomy patients shares a similar profile
-
Graham, K., de las Morenas, A., Tripathi, A., King, C., Kavanah, M., Mendez, J., Stone, M., Slama, J., Miller, M., Antoine, G., Willers, H., Sebastiani, P., and Rosenberg, C. L. (2010) Gene expression in histologically normal epithelium from breast cancer patients and from cancer-free prophylactic mastectomy patients shares a similar profile. Br. J. Cancer 102, 1284-1293
-
(2010)
Br. J. Cancer
, vol.102
, pp. 1284-1293
-
-
Graham, K.1
De Las Morenas, A.2
Tripathi, A.3
King, C.4
Kavanah, M.5
Mendez, J.6
Stone, M.7
Slama, J.8
Miller, M.9
Antoine, G.10
Willers, H.11
Sebastiani, P.12
Rosenberg, C.L.13
-
52
-
-
79959963618
-
Opposing effects of Tcf3 and Tcf1 control Wnt stimulation of embryonic stem cell self-renewal
-
Yi, F., Pereira, L., Hoffman, J. A., Shy, B. R., Yuen, C. M., Liu, D. R., and Merrill, B. J. (2011) Opposing effects of Tcf3 and Tcf1 control Wnt stimulation of embryonic stem cell self-renewal. Nat. Cell Biol. 13, 762-770
-
(2011)
Nat. Cell Biol.
, vol.13
, pp. 762-770
-
-
Yi, F.1
Pereira, L.2
Hoffman, J.A.3
Shy, B.R.4
Yuen, C.M.5
Liu, D.R.6
Merrill, B.J.7
-
53
-
-
79551594937
-
β-catenin enhances Oct-4 activity and reinforces pluripotency through a TCF-independent mechanism
-
Kelly, K. F., Ng, D. Y., Jayakumaran, G., Wood, G. A., Koide, H., and Doble, B. W. (2011) β-catenin enhances Oct-4 activity and reinforces pluripotency through a TCF-independent mechanism. Cell Stem Cell 8, 214-227
-
(2011)
Cell Stem Cell
, vol.8
, pp. 214-227
-
-
Kelly, K.F.1
Ng, D.Y.2
Jayakumaran, G.3
Wood, G.A.4
Koide, H.5
Doble, B.W.6
-
54
-
-
77957763022
-
Oct-3/4 regulates stem cell identity and cell fate decisions by modulating Wnt/β-catenin signalling
-
Abu-Remaileh, M., Gerson, A., Farago, M., Nathan, G., Alkalay, I., Rousso, S. Z., Gur, M., Fainsod, A., and Bergman, Y. (2010) Oct-3/4 regulates stem cell identity and cell fate decisions by modulating Wnt/β-catenin signalling. EMBO J. 29, 3236-3248
-
(2010)
EMBO J.
, vol.29
, pp. 3236-3248
-
-
Abu-Remaileh, M.1
Gerson, A.2
Farago, M.3
Nathan, G.4
Alkalay, I.5
Rousso, S.Z.6
Gur, M.7
Fainsod, A.8
Bergman, Y.9
-
55
-
-
65949088800
-
Stem cell factor SALL4 represses the transcriptions of PTEN and SALL1 through an epigenetic repressor complex
-
Lu, J., Jeong, H., Kong, N., Yang, Y., Carroll, J., Luo, H. R., Silberstein, L. E., Yupo, M., and Chai, L. (2009) Stem cell factor SALL4 represses the transcriptions of PTEN and SALL1 through an epigenetic repressor complex. PLoS One 4, e5577
-
(2009)
PLoS One
, vol.4
-
-
Lu, J.1
Jeong, H.2
Kong, N.3
Yang, Y.4
Carroll, J.5
Luo, H.R.6
Silberstein, L.E.7
Yupo, M.8
Chai, L.9
-
56
-
-
34547856653
-
The human Mi-2/NuRD complex and gene regulation
-
DOI 10.1038/sj.onc.1210611, PII 1210611
-
Denslow, S. A., and Wade, P. A. (2007) The human Mi-2/NuRD complex and gene regulation. Oncogene 26, 5433-5438 (Pubitemid 47255925)
-
(2007)
Oncogene
, vol.26
, Issue.37
, pp. 5433-5438
-
-
Denslow, S.A.1
Wade, P.A.2
-
57
-
-
18844455499
-
Developmental roles of the Mi-2/NURD-associated protein p66 in Drosophila
-
Kon, C., Cadigan, K. M., Da Silva, S. L., and Nusse, R. (2005) Developmental roles of the Mi-2/NURD-associated protein p66 in Drosophila. Genetics 169, 2087-2100
-
(2005)
Genetics
, vol.169
, pp. 2087-2100
-
-
Kon, C.1
Cadigan, K.M.2
Da Silva, S.L.3
Nusse, R.4
-
58
-
-
68749108259
-
LSD1 is a subunit of the NuRD complex and targets the metastasis programs in breast cancer
-
Wang, Y., Zhang, H., Chen, Y., Sun, Y., Yang, F., Yu, W., Liang, J., Sun, L., Yang, X., Shi, L., Li, R., Li, Y., Zhang, Y., Li, Q., Yi, X., and Shang, Y. (2009) LSD1 is a subunit of the NuRD complex and targets the metastasis programs in breast cancer. Cell 138, 660-672
-
(2009)
Cell
, vol.138
, pp. 660-672
-
-
Wang, Y.1
Zhang, H.2
Chen, Y.3
Sun, Y.4
Yang, F.5
Yu, W.6
Liang, J.7
Sun, L.8
Yang, X.9
Shi, L.10
Li, R.11
Li, Y.12
Zhang, Y.13
Li, Q.14
Yi, X.15
Shang, Y.16
-
59
-
-
33847334699
-
Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome
-
DOI 10.1038/ng1966, PII NG1966
-
Heintzman, N. D., Stuart, R. K., Hon, G., Fu, Y., Ching, C. W., Hawkins, R. D., Barrera, L. O., Van Calcar, S., Qu, C., Ching, K. A., Wang, W., Weng, Z., Green, R. D., Crawford, G. E., and Ren, B. (2007) Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome. Nat. Genet. 39, 311-318 (Pubitemid 46328487)
-
(2007)
Nature Genetics
, vol.39
, Issue.3
, pp. 311-318
-
-
Heintzman, N.D.1
Stuart, R.K.2
Hon, G.3
Fu, Y.4
Ching, C.W.5
Hawkins, R.D.6
Barrera, L.O.7
Van Calcar, S.8
Qu, C.9
Ching, K.A.10
Wang, W.11
Weng, Z.12
Green, R.D.13
Crawford, G.E.14
Ren, B.15
-
60
-
-
40849085514
-
FoxA1 Translates Epigenetic Signatures into Enhancer-Driven Lineage-Specific Transcription
-
DOI 10.1016/j.cell.2008.01.018, PII S0092867408001189
-
Lupien, M., Eeckhoute, J., Meyer, C. A., Wang, Q., Zhang, Y., Li, W., Carroll, J. S., Liu, X. S., and Brown, M. (2008) FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription. Cell 132, 958-970 (Pubitemid 351391952)
-
(2008)
Cell
, vol.132
, Issue.6
, pp. 958-970
-
-
Lupien, M.1
Eeckhoute, J.2
Meyer, C.A.3
Wang, Q.4
Zhang, Y.5
Li, W.6
Carroll, J.S.7
Liu, X.S.8
Brown, M.9
|