Dispersal patterns in space and time: A case study of apiaceae subfamily apioideae

Journal of Biogeography

Volumn 40, Issue 7, 2013, Pages 1324-1335

  Banasiak, Łukasz ^a   Piwczyński, Marcin ^b   Uliński, Tomasz ^c   Downie, Stephen R ^d   Watson, Mark F ^e   Shakya, Bandana ^e,f   Spalik, Krzysztof ^a  

^a UNIVERSITY OF WARSAW   (Poland)

^b NICOLAUS COPERNICUS UNIVERSITY   (Poland)

^c IBM   (Poland)

^d UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

^e ROYAL BOTANIC GARDEN EDINBURGH   (United Kingdom)

^f INTERNATIONAL CENTRE FOR INTEGRATED MOUNTAIN DEVELOPMENT   (Nepal)

Author keywords

Apiaceae; Apioideae; Calibration; Dispersal; Historical biogeography; NrDNA ITS; Phylogeny; Umbelliferae

Indexed keywords

CALIBRATION; DICOTYLEDON; DISPERSAL; FLORISTICS; GEOGRAPHICAL DISTRIBUTION; MIGRATION ROUTE; NORTHERN HEMISPHERE; PHYLOGENETICS; PHYLOGENY; PHYLOGEOGRAPHY; RECONSTRUCTION; SPATIOTEMPORAL ANALYSIS; TAXONOMY;

AUSTRALIA; EURASIA; FAR EAST; NORTH AMERICA; SUB-SAHARAN AFRICA;

APIACEAE; APIOIDEAE;

EID: 84880057694     PISSN: 03050270     EISSN: 13652699     Source Type: Journal    
DOI: 10.1111/jbi.12071     Document Type: Article

References (46)

1. Bell, C.D., Soltis, D.E. & Soltis, P.S. (2010) The age and diversification of the angiosperms re-revisited. American Journal of Botany, 97, 1296-1303.
2. Bone, T.S., Downie, S.R., Affolter, J.M. & Spalik, K. (2011) A phylogenetic and biogeographic study of the genus Lilaeopsis (Apiaceae tribe Oenantheae). Systematic Botany, 36, 789-805.
3. Bremer, K., Friis, E.M. & Bremer, B. (2004) Molecular phylogenetic dating of asterid flowering plants shows Early Cretaceous diversification. Systematic Biology, 53, 496-505.
4. Calviño, C.I., Tilney, P.M., van Wyk, B.-E. & Downie, S.R. (2006) A molecular phylogenetic study of southern African Apiaceae. American Journal of Botany, 93, 1828-1847.
5. Cody, S., Richardson, J.E., Rull, V., Ellis, C. & Pennington, R.T. (2010) The Great American Biotic Interchange revisited. Ecography, 33, 326-332.
6. Cook, L.G. & Crisp, M.D. (2005) Directional asymmetry of long-distance dispersal and colonization could mislead reconstructions of biogeography. Journal of Biogeography, 32, 741-754.
7. Crisp, M.D., Arroyo, M.T.K., Cook, L.G., Gandolfo, M.A., Jordan, G.J., McGlone, M.S., Weston, P.H., Westoby, M., Wilf, P. & Linder, H.P. (2009) Phylogenetic biome conservatism on a global scale. Nature, 458, 754-756.
8. Donoghue, M.J. & Smith, S.A. (2004) Patterns in the assembly of temperate forests around the Northern Hemisphere. Philosophical Transactions of the Royal Society B: Biological Sciences, 359, 1633-1644.
9. Downie, S.R. & Katz-Downie, D.S. (1999) Phylogenetic analysis of chloroplast rps16 intron sequences reveals relationships within the woody southern African Apiaceae subfamily Apioideae. Canadian Journal of Botany, 77, 1120-1135.
10. Downie, S.R., Spalik, K., Katz-Downie, D.S. & Reduron, J.-P. (2010) Major clades within Apiaceae subfamily Apioideae as inferred by phylogenetic analysis of nrDNA ITS sequences. Plant Diversity and Evolution, 128, 111-136.
11. Drummond, A.J. & Rambaut, A. (2007) BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evolutionary Biology, 7, 214.
12. Farabee, M.J. (1991) Botanical affinities of some Triprojectacites fossil pollen. American Journal of Botany, 78, 1172-1181.
13. Gruas-Cavagnetto, C. & Cerceau-Larrival, M.-T. (1984) Apports des pollens fossiles d'Ombellifères à la connaissance paléoécologique et paléoclimatique de l'Éocène français. Review of Palaeobotany and Palynology, 40, 317-345.
14. Guindon, S. & Gascuel, O. (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Systematic Biology, 52, 696-704.
15. Katoh, K. & Toh, H. (2008) Recent developments in the MAFFT multiple sequence alignment program. Briefings in Bioinformatics, 9, 286-298.
16. Lemey, P., Rambaut, A., Drummond, A.J. & Suchard, M.A. (2009) Bayesian phylogeography finds its roots. PLoS Computational Biology, 5, e1000520.
17. Maddison, W.P. & Maddison, D.R. (2010) Mesquite: a modular system for evolutionary analysis, version 2.73. Available at: http://mesquiteproject.org.
18. Magallón, S. & Castillo, A. (2009) Angiosperm diversification through time. American Journal of Botany, 96, 349-365.
19. Magee, A.R., Calviño, C.I., Liu, M., Downie, S.R., Tilney, P.M. & van Wyk, B.-E. (2010) New tribal delimitations for the early diverging lineages of Apiaceae subfamily Apioideae. Taxon, 59, 567-580.
20. Moore, M.J., Bell, C.D., Soltis, P.S. & Soltis, D.E. (2007) Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms. Proceedings of the National Academy of Sciences USA, 104, 19363-19368.
21. Palazzesi, L. & Barreda, V. (2007) Major vegetation trends in the Tertiary of Patagonia (Argentina): a qualitative paleoclimatic approach based on palynological evidence. Flora - Morphology, Distribution, Functional Ecology of Plants, 202, 328-337.
22. Pimenov, M.G. & Leonov, M.V. (1993) The genera of the Umbelliferae. Royal Botanic Gardens, Kew, UK.
23. Plunkett, G.M., Pimenov, M.G., Reduron, J.P., Kljuykov, E.V., Lee, B.Y., van Wyk, B.E., Tilney, P.M., Watson, M.F., Ostroumova, T.A., Spalik, K., Hart, J.M., Henwood, M.J., Webb, C.J., Pu, F.T., Mitchell, A.D. & Muckensturm, B. (in press) Apiaceae. The families and genera of vascular plants (ed. by K. Kubitzky ). Springer, Berlin.
24. Posada, D. & Crandall, K.A. (1998) MODELTEST: testing the model of DNA substitution. Bioinformatics, 14, 817-818.
25. R Development Core Team (2010) R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria.
26. Rambaut, A. (2009) FigTree v1.3.1. Institute of Evolutionary Biology, University of Edinburgh, Edinburgh. Available at: http://tree.bio.ed.ac.uk/software/figtree/.
27. Rambaut, A. & Drummond, A.J. (2009) Tracer v1.5.0. Available at: http://beast.bio.ed.ac.uk/Tracer.
28. Raven, P.H. (1963) Amphitropical relationships in the floras of North and South America. Quarterly Review of Biology, 38, 151-177.
29. Ree, R.H. & Smith, S.A. (2008) Maximum likelihood inference of geographic range evolution by dispersal, local extinction, and cladogenesis. Systematic Biology, 57, 4-14.
30. Ree, R.H., Moore, B.R., Webb, C.O. & Donoghue, M.J. (2005) A likelihood framework for inferring the evolution of geographic range on phylogenetic trees. Evolution, 59, 2299-2311.
31. Ronquist, F. (1997) Dispersal-vicariance analysis: a new approach to the quantification of historical biogeography. Systematic Biology, 46, 195-203.
32. Salzmann, U., Haywood, A.M., Lunt, D.J., Valdes, P.J. & Hill, D.J. (2008) A new global biome reconstruction and data-model comparison for the Middle Pliocene. Global Ecology and Biogeography, 17, 432-447.
33. Sancay, R.H.N., Bati, Z., Işi{dotless}k, U., Kirici, S. & Akça, N. (2006) Palynomorph, Foraminifera, and calcareous nannoplankton biostratigraphy of Oligo-Miocene sediments in the Muş basin, eastern Anatolia, Turkey. Turkish Journal of Earth Sciences, 15, 259-319.
34. Sanmartín, I. & Ronquist, F. (2004) Southern Hemisphere biogeography inferred by event-based models: plant versus animal patterns. Systematic Biology, 53, 216-243.
35. Sanmartín, I., Enghoff, H. & Ronquist, F. (2001) Patterns of animal dispersal, vicariance and diversification in the Holarctic. Biological Journal of the Linnean Society, 73, 345-390.
36. Sanmartín, I., Wanntorp, L. & Winkworth, R.C. (2007) West Wind Drift revisited: testing for directional dispersal in the Southern Hemisphere using event-based tree fitting. Journal of Biogeography, 34, 398-416.
37. Sanmartín, I., van der Mark, P. & Ronquist, F. (2008) Inferring dispersal: a Bayesian approach to phylogeny-based island biogeography, with special reference to the Canary Islands. Journal of Biogeography, 35, 428-449.
38. Spalik, K. & Downie, S.R. (2006) The evolutionary history of Sium sensu lato (Apiaceae): dispersal, vicariance, and domestication as inferred from ITS rDNA phylogeny. American Journal of Botany, 93, 747-761.
39. (UUU) and nrDNA ITS sequences. Taxon, 58, 735-748.
40. Spalik, K., Piwczyński, M., Danderson, C.A., Kurzyna-Młynik, R., Bone, T.S. & Downie, S.R. (2010) Amphitropic amphiantarctic disjunctions in Apiaceae subfamily Apioideae. Journal of Biogeography, 37, 1977-1994.
41. Swofford, D.L. (2003) PAUP*: phylogenetic analysis using parsimony (*and other methods). Version 4.0b10. Sinauer Associates, Sunderland, MA.
42. Takhtajan, A. (1986) The floristic regions of the world. University of California Press, Berkeley, CA.
43. Tiffney, B.H. & Manchester, S.R. (2001) The use of geological and paleontological evidence in evaluating plant phylogeographic hypotheses in the Northern Hemisphere Tertiary. International Journal of Plant Sciences, 162, S3-S17.
44. Wen, J. (1999) Evolution of eastern Asian and eastern North American disjunct distributions in flowering plants. Annual Review of Ecology and Systematics, 30, 421-455.
45. Wiens, J.J. & Graham, C.H. (2005) Niche conservatism: integrating evolution, ecology, and conservation biology. Annual Review of Ecology, Evolution, and Systematics, 36, 519-539.
46. Zachos, J., Pagani, M., Sloan, L., Thomas, E. & Billups, K. (2001) Trends, rhythms, and aberrations in global climate 65 Ma to present. Science, 292, 686-693.