Three-dimensional deconvolution microfluidic microscopy using a tilted channel

Journal of Biomedical Optics

Volumn 18, Issue 4, 2013, Pages

  Pégard, Nicolas C ^a   Fleischer, Jason W ^a  

^a Princeton University   (United States)

Author keywords

cytometers; deconvolution; imaging; microfluidics; microscopy; optofluidics; profilometry; three dimensional

Indexed keywords

CYTOMETERS; EXPERIMENTAL DEVICES; LIQUID ENVIRONMENT; MICRO-FLUIDIC DEVICES; MICROFLUIDIC CHANNEL; OPTO-FLUIDICS; THREEDIMENSIONAL (3-D); TRANSLATION STAGE;

DECONVOLUTION; FLUIDIC DEVICES; IMAGING TECHNIQUES; MICROFLUIDICS; MICROSCOPIC EXAMINATION; PROFILOMETRY;

THREE DIMENSIONAL;

ALGORITHM; ARTICLE; CYTOLOGY; EQUIPMENT; FLOW CYTOMETRY; METHODOLOGY; MICROFLUIDIC ANALYSIS; MICROSCOPY; THREE DIMENSIONAL IMAGING; YEAST;

ALGORITHMS; FLOW CYTOMETRY; IMAGING, THREE-DIMENSIONAL; MICROFLUIDIC ANALYTICAL TECHNIQUES; MICROSCOPY; YEASTS;

EID: 84879984082     PISSN: 10833668     EISSN: 15602281     Source Type: Journal    
DOI: 10.1117/1.JBO.18.4.040503     Document Type: Article

References (22)

1. X. Heng et al., "Optofluidic microscopy: a method for implementing a high resolution optical microscope on a chip," Lab Chip 6(10), 1274-1276 (2006). (Pubitemid 44744291)
2. G. Zheng et al., "Sub-pixel resolving optofluidic microscope for on-chip cell imaging," Lab Chip 10(22), 3125-3129 (2010).
3. W. Bishara, H. Zhu, and A. Ozcan, "Holographic optofluidic microscopy," Opt. Express 18(26), 27499-27510 (2010).
4. S. S. H. Tsai, I. M. Griffiths, and H. A. Stone, "Microfluidic immunomagnetic multi-target sorting-a model for controlling deflection of paramagnetic beads," Lab Chip 11(15), 2577-2582 (2011).
5. S. Yang et al., "Stereoscopic optofluidic on-chip microscope," in Proc. IEEE Winter Topicals, pp. 91-92, IEEE, Keystone, Colorado (2011).
6. S. Isikman et al., "Lens-free optical tomographic microscope with a large imaging volume on a chip," Proc. Natl. Acad. Sci. U. S. A. 108(18), 7296-7301 (2011).
7. N. Pégard and J. Fleischer, "Optimizing holographic data storage using a fractional Fourier transform," Opt. Lett. 36(13), 2551-2553 (2011).
8. M. R. Teague, "Deterministic phase retrieval: a Greens function solution," J. Opt. Soc. Am. 73(11), 1434-1441 (1983).
9. S. Gorthi and E. Schonbrun, "Phase imaging flow cytometry using a focus-stack collecting microscope," Opt. Lett. 37(4), 707-709 (2012).
10. A. Erhardt et al., "Reconstructing 3-D light-microscopic images by digital image processing," Appl. Opt. 24(2), 194-200 (1985). (Pubitemid 15460624)
11. N. Pégard and J. Fleischer, "3D microfluidic microscopy using a tilted channel," in Biomedical Optics, Optical Society of America, Miami, Florida (2012).
12. H. Stone and S. Kim, "Microfluidics: basic issues, applications, and challenges," AIChE J. 47(6), 1250-1254 (2001). (Pubitemid 36858854)
13. M. R. Teague, "Irradiance moments: their propagation and use for unique retrieval of phase," J. Opt. Soc. Am. 72(9), 1199-1209 (1982).
14. A. Tikhonov et al., Numerical Methods for the Solution of Ill-Posed Problems, Vol. 328, Springer, New York (1995).
15. W. Richardson, "Bayesian-based iterative method of image restoration," J. Opt. Soc. Am. 62(1), 55-59 (1972).
16. T. Chan and C.-K. Wong, "Total variation blind deconvolution," IEEE Trans. Image Process. 7(3), 370-375 (1998). (Pubitemid 128745355)
17. W. Dong et al., "Image deblurring and super-resolution by adaptive sparse domain selection and adaptive regularization," IEEE Trans. Image Process. 20(7), 1838-1857 (2011).
18. S. Pavani et al., "Three-dimensional, single-molecule fluorescence imaging beyond the diffraction limit by using a double-helix point spread function," Proc. Natl. Acad. Sci. U. S. A. 106(9), 2995-2999 (2009).
19. C. Chatwin and R. Wang, Frequency Domain Filtering Strategies for Hybrid Optical Information Processing, Research Studies Press, Baldock, United Kingdom (1996).
20. Y. Ohya et al., "High-dimensional and large-scale phenotyping of yeast mutants," Proc. Natl. Acad. Sci. U. S. A. 102(52), 19015-19020 (2005). (Pubitemid 43049558)
21. M. Abkarian et al., "Cellular-scale hydrodynamics," Biomed. Mater. 3(3), 034011 (2008).
22. C. Westendorf et al., "Live cell flattening-traditional and novel approaches," BMC Biophys. 3(1), 9 (2010).