Mapping the Tail Fiber as the Receptor Binding Protein Responsible for Differential Host Specificity of Pseudomonas aeruginosa Bacteriophages PaP1 and JG004

PLoS ONE

Volumn 8, Issue 7, 2013, Pages

  Le, Shuai ^a,b   He, Xuesong ^b   Tan, Yinling ^a   Huang, Guangtao ^a   Zhang, Lin ^a   Lux, Renate ^b   Shi, Wenyuan ^b   Hu, Fuquan ^a  

^a THIRD MILITARY MEDICAL UNIVERSITY   (China)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ASPARAGINE; BINDING PROTEIN; GENOMIC DNA; LYSINE; RECEPTOR BINDING PROTEIN; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL GENE; BACTERIAL STRAIN; BACTERIOPHAGE; BACTERIOPHAGE JG004; BACTERIOPHAGE PAP1; BACTERIUM CULTURE; CONTROLLED STUDY; DNA ISOLATION; DNA SEQUENCE; HOST RANGE; MUTANT; NONHUMAN; ORF69 GENE; ORF84 GENE; PLASMID; POINT MUTATION; PROTEIN BINDING; PSEUDOMONAS AERUGINOSA; SEQUENCE HOMOLOGY;

AMINO ACID SEQUENCE; BACTERIOPHAGES; BASE SEQUENCE; CARRIER PROTEINS; GENE ORDER; GENETIC LOCI; GENOME, VIRAL; HOST SPECIFICITY; MOLECULAR SEQUENCE DATA; MUTATION; OPEN READING FRAMES; PROTEIN BINDING; PSEUDOMONAS AERUGINOSA; SEQUENCE ALIGNMENT; VIRAL TAIL PROTEINS;

ESCHERICHIA COLI; PSEUDOMONAS AERUGINOSA;

EID: 84879953516     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0068562     Document Type: Article

References (45)

1. Christophersen LJ, Trøstrup H, Damlund DSM, Bjarnsholt T, Thomsen K, et al. (2012) Bead-size directed distribution of Pseudomonas aeruginosa results in distinct inflammatory response in a mouse model of chronic lung infection. Clin Exp Immunol 170: 222-230. doi:10.1111/j.1365-2249.2012.04652.x. PubMed: 23039893.
2. Cramer N, Wiehlmann L, Ciofu O, Tamm S, Høiby N, et al. (2012) Molecular Epidemiology of Chronic Pseudomonas aeruginosa Airway Infections in Cystic Fibrosis. PLOS ONE 7: e50731. doi:10.1371/journal.pone.0050731. PubMed: 23209821.
3. Krahn T, Gilmour C, Tilak J, Fraud S, Kerr N, et al. (2012) Determinants of Intrinsic Aminoglycoside Resistance in Pseudomonas aeruginosa. Antimicrob Agents Chemother 56: 5591-5602. doi:10.1128/AAC.01446-12. PubMed: 22908149.
4. Qin X, Zerr DM, McNutt MA, Berry JE, Burns JL, et al. (2012) Pseudomonas aeruginosa Syntrophy in Chronically Colonized Airways of Cystic Fibrosis Patients. Antimicrob Agents Chemother 56: 5971-5981. doi:10.1128/AAC.01371-12. PubMed: 22964251.
5. Slekovec C, Plantin J, Cholley P, Thouverez M, Talon D, et al. (2012) Tracking Down Antibiotic-Resistant Pseudomonas aeruginosa Isolates in a Wastewater Network. PLOS ONE 7: e49300. doi:10.1371/journal.pone.0049300. PubMed: 23284623.
6. Yamamoto S, Nava RG, Zhu JH, Huang HJ, Ibrahim M, et al. (2012) Cutting Edge: Pseudomonas aeruginosa Abolishes Established Lung Transplant Tolerance by Stimulating B7 Expression on Neutrophils. J Immunol 189: 4221-4225. doi:10.4049/jimmunol.1201683. PubMed: 23018463.
7. Breidenstein EBM, de la Fuente-Núñez C, Hancock REW, (2011) Pseudomonas aeruginosa: all roads lead to resistance. Trends Microbiol 19: 419-426. doi:10.1016/j.tim.2011.04.005. PubMed: 21664819.
8. Skiada A, Markogiannakis A, Plachouras D, Daikos GL, (2011) Adaptive resistance to cationic compounds in Pseudomonas aeruginosa. Int J Antimicrob Agents 37: 187-193. doi:10.1016/j.ijantimicag.2010.11.019. PubMed: 21295448.
9. Fothergill JL, Winstanley C, James CE, (2012) Novel therapeutic strategies to counter Pseudomonas aeruginosa infections. Expert Rev Anti Infect Ther 10: 219-235. doi:10.1586/eri.11.168. PubMed: 22339195.
10. Bjarnsholt T, Tolker-Nielsen T, Høiby N, Givskov M, (2010) Interference of Pseudomonas aeruginosa signalling and biofilm formation for infection control. Expert Rev Mol Med 12: e11. doi:10.1017/S1462399410001420. PubMed: 20370936.
11. Harper DR, Enright MC, (2011) Bacteriophages for the treatment of Pseudomonas aeruginosa infections. Appl Microbiol 111: 1-7. doi:10.1111/j.1365-2672.2011.05003.x. PubMed: 21410851.
12. McVay CS, Velásquez M, Fralick JA, (2007) Phage therapy of Pseudomonas aeruginosa infection in a mouse burn wound model. Antimicrob Agents Chemother 51: 1934-1938. doi:10.1128/AAC.01028-06. PubMed: 17387151.
13. Morello E, Saussereau E, Maura D, Huerre M, Touqui L, et al. (2011) Pulmonary Bacteriophage Therapy on Pseudomonas aeruginosa Cystic Fibrosis Strains: First Steps Towards Treatment and Prevention. PLOS ONE 6: e16963. doi:10.1371/journal.pone.0016963. PubMed: 21347240.
14. Duplessis M, Moineau S, (2001) Identification of a genetic determinant responsible for host specificity in Streptococcus thermophilus bacteriophages. Mol Microbiol 41: 325-336. doi:10.1046/j.1365-2958.2001.02521.x. PubMed: 11489121.
15. Dupont K, Vogensen FK, Neve H, Bresciani J, Josephsen J, (2004) Identification of the receptor-binding protein in 936-species lactococcal bacteriophages. Appl Environ Microbiol 70: 5818-5824. doi:10.1128/AEM.70.10.5818-5824.2004. PubMed: 15466519.
16. Heller KJ, (1984) Identification of the phage gene for host receptor specificity by analyzing hybrid phages of T5 and BF23. Virology 139: 11-21. doi:10.1016/0042-6822(84)90325-8. PubMed: 6093378.
17. Mahichi F, Synnott AJ, Yamamichi K, Osada T, Tanji Y, (2009) Site-specific recombination of T2 phage using IP008 long tail fiber genes provides a targeted method for expanding host range while retaining lytic activity. FEMS Microbiol Lett 295: 211-217. doi:10.1111/j.1574-6968.2009.01588.x. PubMed: 19453513.
18. Rakhuba DV, Kolomiets EI, Dey ES, Novik GI, (2010) Bacteriophage receptors, mechanisms of phage adsorption and penetration into host cell. Pol J Microbiol 59: 145-155. PubMed: 21033576.
19. Schwarzer D, Buettner FFR, Browning C, Nazarov S, Rabsch W, et al. (2012) A Multivalent Adsorption Apparatus Explains the Broad Host Range of Phage phi92: a Comprehensive Genomic and Structural Analysis. J Virol 86: 10384-10398. doi:10.1128/JVI.00801-12. PubMed: 22787233.
20. Chatterjee S, Rothenberg E, (2012) Interaction of bacteriophage l with its E. coli receptor, LamB. Viruses 4: 3162-3178. doi:10.3390/v4113162. PubMed: 23202520.
21. Rothenberg E, Sepúlveda LA, Skinner SO, Zeng LY, Selvin PR, et al. (2011) Single-Virus Tracking Reveals a Spatial Receptor-Dependent Search Mechanism. Biophys J 100: 2875-2882. doi:10.1016/j.bpj.2011.05.014. PubMed: 21689520.
22. Bartual SG, Otero JM, Garcia-Doval C, Llamas-Saiz AL, Kahn R, et al. (2010) Structure of the bacteriophage T4 long tail fiber receptor-binding tip. Proc Natl Acad Sci U S A 107: 20287-20292. doi:10.1073/pnas.1011218107. PubMed: 21041684.
23. Veesler D, Spinelli S, Mahony J, Lichière J, Blangy S, et al. (2012) Structure of the phage TP901-1 1.8 MDa baseplate suggests an alternative host adhesion mechanism. Proc Natl Acad Sci U S A 109: 8954-8958. doi:10.1073/pnas.1200966109. PubMed: 22611190.
24. Wang J, Hofnung M, Charbit A, (2000) The C-terminal portion of the tail fiber protein of bacteriophage lambda is responsible for binding to LamB, its receptor at the surface of Escherichia coli K-12. J Bacteriol 182: 508-512. doi:10.1128/JB.182.2.508-512.2000. PubMed: 10629200.
25. Vegge CS, Vogensen FK, Mc Grath S, Neve H, van Sinderen D, et al. (2006) Identification of the lower baseplate protein as the antireceptor of the temperate lactococcal bacteriophages TP901-1 and Tuc2009. J Bacteriol 188: 55-63. doi:10.1128/JB.188.1.55-63.2006. PubMed: 16352821.
26. Lu SG, Le S, Tan YL, Zhu JM, Li M, et al. (2013) Genomic and Proteomic Analysis of the Terminal Redundant Genome of Pseudomonas aeruginosa Phage PaP1: Establishment of PaP1-like Phage Genus. PLOS ONE 8: e62933. doi:10.1371/journal.pone.0062933. PubMed: 23675441.
27. Sun WZ, Tan YL, Jia M, Hu XM, Rao XC, et al. (2010) Functional characterization of the endolysin gene encoded by Pseudomonas aeruginosa bacteriophage PaP1. Afr J Microbiol Res 4: 933-939.
28. Tan Y, Rao X, Jin X, Huang J, Zhu J, et al. (2007) Whole genome sequencing of a novel temperate bacteriophage of P. aeruginosa: evidence of tRNA gene mediating integration of the phage genome into the host bacterial chromosome. Cell Microbiol 9: 479-491. doi:10.1111/j.1462-5822.2006.00804.x. PubMed: 16965514.
29. Garbe J, Bunk B, Rohde M, Schobert M, (2011) Sequencing and Characterization of Pseudomonas aeruginosa phage JG004. BMC Microbiol 11: 12. doi:10.1186/1471-2180-11-12. PubMed: 21241507.
30. Spinelli S, Campanacci V, Blangy S, Moineau S, Tegoni M, et al. (2006) Modular structure of the receptor binding proteins of Lactococcus lactis phages- The RBP structure of the temperate phage TP901-1. J Biol Chem 281: 14256-14262. doi:10.1074/jbc.M600666200. PubMed: 16549427.
31. Ackermann HW, (2003) Bacteriophage observations and evolution. Res Microbiol 154: 245-251. doi:10.1016/S0923-2508(03)00067-6. PubMed: 12798228.
32. Plisson C, White HE, Auzat I, Zafarani A, São-José C, et al. (2007) Structure of bacteriophage SPP1 tail reveals trigger for DNA ejection. EMBO J 26: 3720-3728. doi:10.1038/sj.emboj.7601786. PubMed: 17611601.
33. Rainey GJ, Natonson A, Maxfield LF, Coffin JM, (2003) Mechanisms of avian retroviral host range extension. J Virol 77: 6709-6719. doi:10.1128/JVI.77.12.6709-6719.2003. PubMed: 12767991.
34. Heineman RH, Springman R, Bull JJ, (2008) Optimal foraging by bacteriophages through host avoidance. Am Nat 171: E149-E157. doi:10.1086/528962. PubMed: 18254683.
35. Uchiyama J, Takemura I, Satoh M, Kato SI, Ujihara T, et al. (2011) Improved Adsorption of an Enterococcus faecalis Bacteriophage Phi EF24C with a Spontaneous Point Mutation. PLOS ONE 6: e26648. doi:10.1371/journal.pone.0026648. PubMed: 22046321.
36. Buckling A, Rainey PB, (2002) Antagonistic coevolution between a bacterium and a bacteriophage. Proc R Soc Lond B Biol Sci 269: 931-936. doi:10.1098/rspb.2001.1945.
37. Pal C, Maciá MD, Oliver A, Schachar I, Buckling A, (2007) Coevolution with viruses drives the evolution of bacterial mutation rates. Nature 450: 1079-1081. doi:10.1038/nature06350. PubMed: 18059461.
38. Paterson S, Vogwill T, Buckling A, Benmayor R, Spiers AJ, et al. (2010) Antagonistic coevolution accelerates molecular evolution. Nature 464: 275-U154. doi:10.1038/nature08798. PubMed: 20182425.
39. Hashemolhosseini S, Holmes Z, Mutschler B, Henning U, (1994) Alterations of receptor specificities of coliphages of the T2 family. J Mol Biol 240: 105-110. doi:10.1006/jmbi.1994.1424. PubMed: 8027994.
40. Sciara G, Bebeacua C, Bron P, Tremblay D, Ortiz-Lombardia M, et al. (2010) Structure of lactococcal phage p2 baseplate and its mechanism of activation. Proc Natl Acad Sci U S A 107: 6852-6857. doi:10.1073/pnas.1000232107. PubMed: 20351260.
41. Garcia-Doval C, van Raaij MJ, (2012) Structure of the receptor-binding carboxy-terminal domain of bacteriophage T7 tail fibers. Proc Natl Acad Sci U S A 109: 9390-9395. doi:10.1073/pnas.1119719109. PubMed: 22645347.
42. Loessner MJ, Rees CE, Stewart GS, Scherer S, (1996) Construction of luciferase reporter bacteriophage A511::luxAB for rapid and sensitive detection of viable Listeria cells. Appl Environ Microbiol 62: 1133-1140. PubMed: 8919773.
43. Scott AE, Timms AR, Connerton PL, Carrillo CL, Radzum KA, et al. (2007) Genome dynamics of Campylobacter jejuni in response to bacteriophage predation. PLOS Pathog 3: 1142-1151. PubMed: 17722979.
44. West SE, Schweizer HP, Dall C, Sample AK, Runyen-Janecky LJ, (1994) Construction of improved Escherichia-Pseudomonas shuttle vectors derived from pUC18/19 and sequence of the region required for their replication in Pseudomonas aeruginosa. Gene 148: 81-86. doi:10.1016/0378-1119(94)90237-2. PubMed: 7926843.
45. Choi KH, Kumar A, Schweizer HP, (2006) A 10-min method for preparation of highly electrocompetent Pseudomonas aeruginosa cells: application for DNA fragment transfer between chromosomes and plasmid transformation. J Microbiol Methods 64: 391-397. doi:10.1016/j.mimet.2005.06.001. PubMed: 15987659.