Graft union formation in grapevine induces transcriptional changes related to cell wall modification, wounding, hormone signalling, and secondary metabolism

Journal of Experimental Botany

Volumn 64, Issue 10, 2013, Pages 2997-3008

  Cookson, Sarah Jane ^a   Clemente Moreno, Maria José ^a   Hevin, Cyril ^a   Nyamba Mendome, Larissa Zita ^a   Delrot, Serge ^b   Trossat Magnin, Claudine ^b   Ollat, Nathalie ^a  

^a Bordeaux Sciences Agro   (France)

^b UNIVERSITÉ DE BORDEAUX   (France)

Author keywords

Gene expression; grafting; grapevine; perennial plant; spring; stem.

Indexed keywords

PHYTOHORMONE; VEGETABLE PROTEIN;

ARTICLE; BOTANY; CELL WALL; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETICS; GRAFTING; GRAPEVINE; GROWTH, DEVELOPMENT AND AGING; METABOLISM; PERENNIAL PLANT; SECONDARY METABOLISM; SIGNAL TRANSDUCTION; SPRING; STEM.; VITIS;

GENE EXPRESSION; GRAFTING; GRAPEVINE; PERENNIAL PLANT; SPRING; STEM.;

BOTANY; CELL WALL; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, PLANT; PLANT GROWTH REGULATORS; PLANT PROTEINS; SECONDARY METABOLISM; SIGNAL TRANSDUCTION; VITIS;

VITIS; VITIS VINIFERA;

EID: 84879942704     PISSN: 00220957     EISSN: 14602431     Source Type: Journal    
DOI: 10.1093/jxb/ert144     Document Type: Article

References (36)

1. Baba K, Karlberg A, Schmidt J, Schrader J, Hvidsten TR, Bako L, Bhalerao RP. 2011. Activity-dormancy transition in the cambial meristem involves stage-specific modulation of auxin response in hybrid aspen. Proceedings of the National Academy of Sciences, USA 108, 3418-3423
2. Carvalho BS, Irizarry RA. 2010. A framework for oligonucleotide microarray preprocessing. Bioinformatics 26, 2363-2367
3. Dave A, Hernandez ML, He ZS, Andriotis VME, Vaistij FE, Larson TR, Graham IA. 2011. 12-Oxo-phytodienoic acid accumulation during seed development represses seed germination in Arabidopsis. The Plant Cell 23, 583-599
4. Denekamp M, Smeekens SC. 2003. Integration of wounding and osmotic stress signals determines the expression of the AtMYB102 transcription factor gene. Plant Physiology 132, 1415-1423
5. Druart N, Johansson A, Baba K, Schrader J, Sjodin A, Bhalerao RR, Resman L, Trygg J, Moritz T, Bhalerao RP. 2007. Environmental and hormonal regulation of the activity-dormancy cycle in the cambial meristem involves stage-specific modulation of transcriptional and metabolic networks. The Plant Journal 50, 557-573
6. Du Z, Zhou X, Ling Y, Zhang ZH, Su Z. 2010. agriGO: A GO analysis toolkit for the agricultural community. Nucleic Acids Research 38, W64-W70
7. Fan MZ, Xu CY, Xu K, Hu YX. 2012. LATERAL ORGAN BOUNDARIES DOMAIN transcription factors direct callus formation in Arabidopsis regeneration. Cell Research 22, 1169-1180
8. Feys BJ, Wiermer M, Bhat RA, Moisan LJ, Medina-Escobar N, Neu C, Cabral A, Parker JE. 2005. Arabidopsis SENESCENCEASSOCIATED GENE101 stabilizes and signals within an ENHANCED DISEASE SUSCEPTIBILITY1 complex in plant innate immunity. The Plant Cell 17. 2601-2613
9. Friedmann M, Ralph SG, Aeschliman D, Zhuang J, Ritland K, Ellis BE, Bohlmann J, Douglas CJ. 2007. Microarray gene expression profiling of developmental transitions in Sitka spruce (Picea sitchensis) apical shoots. Journal of Experimental Botany 58, 593-614
10. Gentleman RC, Carey VJ, Bates DM, et al. 2004. Bioconductor: Open software development for computational biology and bioinformatics. Genome Biology 5, R80
11. Galindo Gonzalez LM, El Kayal W, Ju CJT, Allen CCG, King-Jones S, Cooke JEK. 2012. Integrated transcriptomic and proteomic profiling of white spruce stems during the transition from active growth to dormancy. Plant, Cell and Environment 35, 682-701
12. Holm S. 1979. A simple sequentially rejective multiple test procedure. Scandinavian Journal of Statistics 6, 65-70
13. Hundertmark M, Hincha DK. 2008. LEA (late embryogenesis abundant) proteins and their encoding genes in Arabidopsis thaliana. BMC Genomics 9, 118
14. Jaillon O, Aury JM, Noel B, et al. 2007. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature 449, 463-467
15. Kauffmann A, Gentleman R C, Huber W. 2009. arrayQualityMetrics -A bioconductor package for quality assessment of microarray data. Bioinformatics 25, 415-416
16. Khan JA, Wang Q, Sjolund RD, Schulz A, Thompson GA. 2007. An early nodulin-like protein accumulates in the sieve element plasma membrane of Arabidopsis. Plant Physiology 143, 1576-1589
17. Lachaud S. 1989. Participation of auxin and abscisic acid in the regulation of seasonal variations in cambial activity and xylogenesis. Trees-Structure and Function 3, 125-137
18. Lee JM, Kubota C, Tsao SJ, Bie Z, Echevarria PH, Morra L, Oda M. 2010. Current status of vegetable grafting: Diffusion, grafting techniques, automation. Scientia Horticulturae 127, 93-105
19. Moreau C, Aksenov N, Lorenzo MG, Segerman B, Funk C, Nilsson P, Jansson S, Tuominen H. 2005. A genomic approach to investigate developmental cell death in woody tissues of Populus trees. Genome Biology 6, R34
20. Petzold HE, Zhao MZ, Beers EP. 2012. Expression and functions of proteases in vascular tissues. Physiologia Plantarum 145, 121-129
21. Pina A, Errea P. 2005. A review of new advances in mechanism of graft compatibility-incompatibility. Scientia Horticulturae 106, 1-11
22. R Development Core Team. 2005. R: A language and environment for statistical computing, reference index version 2.8.1. http://www.Rproject. org, Vienna: R Foundation for Statistical Computing
23. Ramakers C, Ruijter JM, Deprez RHL, Moorman AFM. 2003. Assumption-free analysis of quantitative real-Time polymerase chain reaction (PCR) data. Neuroscience Letters 339, 62-66
24. Reymond P, Weber H, Damond M, Farmer EE. 2000. Differential gene expression in response to mechanical wounding and insect feeding in Arabidopsis. The Plant Cell 12, 707-719
25. Schaller A, Stintzi A, Graff L. 2012. Subtilases -versatile tools for protein turnover, plant development, and interactions with the environment. Physiologia Plantarum 145, 52-66
26. Schrader J, Moyle R, Bhalerao R, Hertzberg M, Lundeberg J, Nilsson P, Bhalerao RP. 2004. Cambial meristem dormancy in trees involves extensive remodelling of the transcriptome. The Plant Journal 40: 173-187
27. Singh S, Cornilescu CC, Tyler RC, Cornilescu G, Tonelli M, Lee MS, Markley JL. 2005. Solution structure of a late embryogenesis abundant protein (LEA14) from Arabidopsis thaliana, a cellular stressrelated protein. Protein Science 14, 2601-2609
28. Smyth GK. 2005. Limma: Linear models for microarray data. In: Gentleman R, Carey V, Dudoit S, R, Irizarry WH, eds. Bioinformatics and computational biology solutions using R and Bioconductor. New York: Springer, 397-420
29. Taki N, Sasaki-Sekimoto Y, Obayashi T, et al. 2005. 12-Oxophytodienoic acid triggers expression of a distinct set of genes and plays a role in wound-induced gene expression in Arabidopsis. Plant Physiology 139, 1268-1283
30. Thimm O, Blasing O, Gibon Y, Nagel A, Meyer S, Kruger P, Selbig J, Muller LA, Rhee SY, Stitt M. 2004. MAPMAN: A user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes. The Plant Journal 37, 914-939
31. Usadel B, Nagel A, Steinhauser D, et al. 2006. PageMan: An interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments. BMC Bioinformatics 7, 535
32. Usadel B, Nagel A, Thimm O, et al. 2005. Extension of the visualization tool MapMan to allow statistical analysis of arrays, display of coresponding genes, and comparison with known responses. Plant Physiology 138, 1195-1204
33. van der Schoot C, Rinne PLH. 2011. Dormancy cycling at the shoot apical meristem: Transitioning between self-organization and selfarrest. Plant Science 180, 120-131
34. Wareing P. 1958. Interaction between indole-Acetic acid and gibberellic acid in cambial activity. Nature Biotechnology 181, 1744-1745
35. Yin H, Yan B, Sun J, Jia PF, Zhang ZJ, Yan XS, Chai J, Ren ZZ, Zheng GC, Liu H. 2012. Graft-union development: A delicate process that involves cell-cell communication between scion and stock for local auxin accumulation. Journal of Experimental Botany 63, 4219-4232
36. Zheng BS, Chu HL, Jin SH, Huang YJ, Wang ZJ, Chen M, Huang JQ. 2010. cDNA-AFLP analysis of gene expression in hickory (Carya cathayensis) during graft process. Tree Physiology 30, 297-303 Génétique et Amélioration des Plantes