-
1
-
-
79251565212
-
Genomics, the genomic view of bacterial diversification
-
Enright MC, Spratt BG. Genomics. The genomic view of bacterial diversification. Science 331(6016), 407-409 (2011).
-
(2011)
Science
, vol.331
, Issue.6016
, pp. 407-409
-
-
Enright, M.C.1
Spratt, B.G.2
-
2
-
-
84866928158
-
Insights from genomics into bacterial pathogen populations
-
Wilson DJ. Insights from genomics into bacterial pathogen populations. PLoS Pathog. 8(9), e1002874 (2012).
-
(2012)
PLoS Pathog.
, vol.8
, Issue.9
-
-
Wilson, D.J.1
-
3
-
-
84865231395
-
Transforming clinical microbiology with bacterial genome sequencing
-
Didelot X, Bowden R, Wilson DJ, Peto TE, Crook DW. Transforming clinical microbiology with bacterial genome sequencing. Nat. Rev. Genet. 13(9), 601-612 (2012).
-
(2012)
Nat. Rev. Genet.
, vol.13
, Issue.9
, pp. 601-612
-
-
Didelot, X.1
Bowden, R.2
Wilson, D.J.3
Peto, T.E.4
Crook, D.W.5
-
4
-
-
84866148001
-
Routine use of microbial whole genome sequencing in diagnostic and public health microbiology
-
Köser CU, Ellington MJ, Cartwright EJ et al. Routine use of microbial whole genome sequencing in diagnostic and public health microbiology. PLoS Pathog. 8(8), e1002824 (2012).
-
(2012)
PLoS Pathog.
, vol.8
, Issue.8
-
-
Köser, C.U.1
Ellington, M.J.2
Cartwright, E.J.3
-
5
-
-
78650854393
-
The origin of the Haitian cholera outbreak strain
-
Chin CS, Sorenson J, Harris JB et al. The origin of the Haitian cholera outbreak strain. N. Engl. J. Med. 364(1), 33-42 (2011).
-
(2011)
N. Engl. J. Med.
, vol.364
, Issue.1
, pp. 33-42
-
-
Chin, C.S.1
Sorenson, J.2
Harris, J.B.3
-
6
-
-
80053133499
-
Evidence for several waves of global transmission in the seventh cholera pandemic
-
Mutreja A, Kim DW, Thomson NR et al. Evidence for several waves of global transmission in the seventh cholera pandemic. Nature 477(7365), 462-465 (2011).
-
(2011)
Nature
, vol.477
, Issue.7365
, pp. 462-465
-
-
Mutreja, A.1
Kim, D.W.2
Thomson, N.R.3
-
7
-
-
79960609901
-
Prospective genomic characterization of the German enterohemorrhagic Escherichia coli O104:H4 outbreak by rapid next generation sequencing technology
-
Mellmann A, Harmsen D, Cummings CA et al. Prospective genomic characterization of the German enterohemorrhagic Escherichia coli O104:H4 outbreak by rapid next generation sequencing technology. PLoS ONE 6(7), e22751 (2011).
-
(2011)
PLoS ONE
, vol.6
, Issue.7
-
-
Mellmann, A.1
Harmsen, D.2
Cummings, C.A.3
-
8
-
-
80052150179
-
Origins of the E. coli strain causing an outbreak of hemolytic-uremic syndrome in Germany
-
Rasko DA, Webster DR, Sahl JW et al. Origins of the E. coli strain causing an outbreak of hemolytic-uremic syndrome in Germany. N. Engl. J. Med. 365(8), 709-717 (2011).
-
(2011)
N. Engl. J. Med.
, vol.365
, Issue.8
, pp. 709-717
-
-
Rasko, D.A.1
Webster, D.R.2
Sahl, J.W.3
-
9
-
-
80052173621
-
E. coli O104:H4 Genome Analysis Crowd-Sourcing Consortium, Open-source genomic analysis of Shiga-toxin-producing E. coli O104:H4
-
Rohde H, Qin J, Cui Y et al.; E. coli O104:H4 Genome Analysis Crowd-Sourcing Consortium. Open-source genomic analysis of Shiga-toxin-producing E. coli O104:H4. N. Engl. J. Med. 365(8), 718-724 (2011).
-
(2011)
N. Engl. J. Med.
, vol.365
, Issue.8
, pp. 718-724
-
-
Rohde, H.1
Qin, J.2
Cui, Y.3
-
10
-
-
84865154653
-
Resolution of a meningococcal disease outbreak from whole-genome sequence data with rapid Web-based analysis methods
-
Jolley KA, Hill DM, Bratcher HB et al. Resolution of a meningococcal disease outbreak from whole-genome sequence data with rapid Web-based analysis methods. J. Clin. Microbiol. 50(9), 3046-3053 (2012).
-
(2012)
J. Clin. Microbiol.
, vol.50
, Issue.9
, pp. 3046-3053
-
-
Jolley, K.A.1
Hill, D.M.2
Bratcher, H.B.3
-
11
-
-
84873467253
-
A pilot study of rapid whole-genome sequencing for the investigation of a Legionella outbreak
-
Reuter S, Harrison TG, Köser CU et al. A pilot study of rapid whole-genome sequencing for the investigation of a Legionella outbreak. BMJ Open 3(1), e002175 (2013).
-
(2013)
BMJ Open 3
, vol.1
-
-
Reuter, S.1
Harrison, T.G.2
Köser, C.U.3
-
12
-
-
84862199752
-
Rapid whole-genome sequencing for investigation of a neonatal MRSA outbreak
-
Köser CU, Holden MT, Ellington MJ et al. Rapid whole-genome sequencing for investigation of a neonatal MRSA outbreak. N. Engl. J. Med. 366(24), 2267-2275 (2012).
-
(2012)
N. Engl. J. Med.
, vol.366
, Issue.24
, pp. 2267-2275
-
-
Köser, C.U.1
Holden, M.T.2
Ellington, M.J.3
-
13
-
-
84862318037
-
A pilot study of rapid benchtop sequencing of Staphylococcus aureus and Clostridium difficile for outbreak detection and surveillance
-
Eyre DW, Golubchik T, Gordon NC et al. A pilot study of rapid benchtop sequencing of Staphylococcus aureus and Clostridium difficile for outbreak detection and surveillance. BMJ Open 2(3), e001124 (2012).
-
(2012)
BMJ Open
, vol.2
, Issue.3
-
-
Eyre, D.W.1
Golubchik, T.2
Gordon, N.C.3
-
14
-
-
84873034794
-
Rapid whole-genome sequencing for investigation of a suspected tuberculosis outbreak
-
Török ME, Reuter S, Bryant J et al. Rapid whole-genome sequencing for investigation of a suspected tuberculosis outbreak. J. Clin. Microbiol. 51(2), 611-614 (2013).
-
(2013)
J. Clin. Microbiol.
, vol.51
, Issue.2
, pp. 611-614
-
-
Török, M.E.1
Reuter, S.2
Bryant, J.3
-
15
-
-
75649084906
-
Evolution of MRSA during hospital transmission and intercontinental spread
-
Harris SR, Feil EJ, Holden MT et al. Evolution of MRSA during hospital transmission and intercontinental spread. Science 327(5964), 469-474 (2010).
-
(2010)
Science 327
, vol.5964
, pp. 469-474
-
-
Harris, S.R.1
Feil, E.J.2
Holden, M.T.3
-
17
-
-
78751650360
-
Reconstructing disease outbreaks from genetic data: A graph approach
-
Jombart T, Eggo RM, Dodd PJ, Balloux F. Reconstructing disease outbreaks from genetic data: a graph approach. Heredity (Edinb.) 106(2), 383-390 (2011).
-
(2011)
Heredity (Edinb.)
, vol.106
, Issue.2
, pp. 383-390
-
-
Jombart, T.1
Eggo, R.M.2
Dodd, P.J.3
Balloux, F.4
-
18
-
-
84865323065
-
NISC Comparative Sequencing Program Group. Tracking a hospital outbreak of carbapenem-resistant Klebsiella pneumoniae with whole-genome sequencing
-
148ra116
-
Snitkin ES, Zelazny AM, Thomas PJ et al.; NISC Comparative Sequencing Program Group. Tracking a hospital outbreak of carbapenem-resistant Klebsiella pneumoniae with whole-genome sequencing. Sci. Transl. Med. 4(148), 148ra116 (2012).
-
(2012)
Sci. Transl. Med.
, vol.4
, pp. 148
-
-
Snitkin, E.S.1
Zelazny, A.M.2
Thomas, P.J.3
-
19
-
-
84871366407
-
Microevolutionary analysis of Clostridium difficile genomes to investigate transmission
-
Didelot X, Eyre D, Cule M et al. Microevolutionary analysis of Clostridium difficile genomes to investigate transmission. Genome Biol. 13(12), R118 (2012).
-
(2012)
Genome Biol.
, vol.13
, Issue.12
-
-
Didelot, X.1
Eyre, D.2
Cule, M.3
-
21
-
-
84872515273
-
Whole-genome sequencing for analysis of an outbreak of meticillin-resistant Staphylococcus aureus: A descriptive study
-
Harris SR, Cartwright EJ, Török ME et al. Whole-genome sequencing for analysis of an outbreak of meticillin-resistant Staphylococcus aureus: a descriptive study. Lancet Infect. Dis. 13(2), 130-136 (2013).
-
(2013)
Lancet Infect. Dis.
, vol.13
, Issue.2
, pp. 130-136
-
-
Harris, S.R.1
Cartwright, E.J.2
Török, M.E.3
-
22
-
-
84865591846
-
A tale of three next generation sequencing platforms: Comparison of Ion Torrent
-
BMC Genomics
-
Quail MA, Smith M, Coupland P et al. A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers. BMC Genomics 13, 341 (2012).
-
Pacific Biosciences and Illumina MiSeq Sequencers
, vol.13
, Issue.341
, pp. 2012
-
-
Quail, M.A.1
Smith, M.2
Coupland, P.3
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