The extraction of single-particle diffraction patterns from a multiple-particle diffraction pattern

Optics Express

Volumn 21, Issue 13, 2013, Pages 15102-15112

  Martin, A V ^a   Morgan, A J ^a   Ekeberg, T ^b   Loh, N D ^c   Maia, F R N C ^b   Wang, F ^d   Spence, J C H ^e   Chapman, H N ^d,f  

^a UNIVERSITY OF MELBOURNE   (Australia)

^b UPPSALA UNIVERSITY   (Sweden)

^c SLAC NATIONAL ACCELERATOR LABORATORY   (United States)

^d DESY   (Germany)

^e ARIZONA STATE UNIVERSITY   (United States)

^f UNIVERSITY OF HAMBURG   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

INTERFEROMETRY; MOLECULES; X RAYS;

BIOLOGICAL MOLECULE; COHERENT DIFFRACTION; CURRENT INJECTION METHODS; IDENTICAL PARTICLES; OPTIMAL CONCENTRATION; SINGLE PARTICLE MEASUREMENTS; THREE DIMENSIONAL IMAGING; X-RAY FREE ELECTRON LASERS;

DIFFRACTION PATTERNS;

EID: 84879926256     PISSN: None     EISSN: 10944087     Source Type: Journal    
DOI: 10.1364/OE.21.015102     Document Type: Article

References (17)

1. V. Ayvazyan, N. Baboi, J. Bähr, V. Balandin, B. Beutner, A. Brandt, I. Bohnet, A. Bolzmann, R. Brinkmann, and O. I. Brovko, "First operation of a free-electron laser generating gw power radiation at 32 nm wavelength," Eur. Phys. J. D 37, 297-303 (2006).
2. P. Emma, R. Akre, J. Arthur, R. M. Bionta, C. Bostedt, J. Bozek, A. Brachmann, P. H. Bucksbaum, R. Coffee, F. J. Decker, Y. Ding, D. Dowell, S. Edstrom, A. Fisher, J. Frisch, S. Gilevich, J. Hastings, G. Hays, P. Hering, Z. Huang, R. Iverson, H. Loos, M. Messerschmidt, A. Miahnahri, S. Moeller, H. -D. Nuhn, D. Pile, D. Ratner, J. Rzepiela, D. Schultz, T. Smith, P. Stefan, H. Tompkins, J. Turner, J. Welch, W. White, J. Wu, G. Yocky, and J. N. Galayda, "First lasing and operation of an angstrom-wavelength free-electron laser," Nat. Photon. 4, 641 (2010).
3. N. G. A. Abrescia, D. H. Bamford, J. M. Grimes, and D. I. Stuart, "Structure unifies the viral universe," Annu. Rev. Biochem. 81, 795-822 (2012).
4. E. P. Carpenter, K. Beis, A. D. Cameron, and S. Iwata, "Overcoming the challenges of membrane protein crystallography," Current Opinion in Structural Biology 18, 581-586 (2008).
5. G. Huldt, A. Szoke, and J. Hajdu, "Diffraction imaging of single particles and biomolecules," J. Struct. Biol. 144, 219-227 (2003).
6. D. P. DePonte, U.Weierstall, K. Schmidt, J.Warner, D. Starodub, J. C. H. Spence, and R. B. Doak, "Gas dynamic virtual nozzle for generation of microscopic droplet streams," J. Phys. D: Appl. Phys. 41, 195505 (2008).
7. M. J. Bogan, S. Boutet, H. N. Chapman, S. Marchesini, A. Barty, W. H. Benner, U. Rohner, M. Frank, S. P. Hau- Riege, S. Bajt, B. W. Woods, M. M. Seibert, B. Iwan, N. Timneanu, J. Hajdu, and J. Schulz, "Aerosol imaging with a soft x-ray free electron laser," Aerosol Sci. Tech. 44, i-vi (2010).
8. N. D. Loh and V. Elser, "Reconstruction algorithm for single-particle diffraction imaging experiments," Phys. Rev. E 80, 026705 (2009).
9. R. Fung, V. Shneerson, D. K. Saldin, and A. Ourmazd, "Structure from fleeting illumination of faint spinning objects in flight," Nat. Phys. 5, 64-67 (2009).
10. G. Bortel and M. Tegze, "Common arc method for diffraction pattern orientation," Acta Crystallogr. A67, 533- 543 (2011).
11. D. Starodub, A. Aquila, S. Bajt, M. Barthelmess, A. Barty, C. Bostedt, J. D. Bozek, N. Coppola, R. B. Doak, S.W. Epp, B. Erk, L. Foucar, L. Gumprecht, C. Y. Hampton, A. Hartmann, R. Hartmann, P. Holl, S. Kassemeyer, N. Kimmel, H. Laksmono, M. Liang, N. D. Loh, L. Lomb, A. V. Martin, K. Nass, C. Reich, D. Rolles, B. Rudek, A. Rudenko, J. Schulz, R. L. Shoeman, R. G. Sierra, H. Soltau, J. Steinbrener, F. Stellato, S. Stern, G. Weidenspointner, M. Frank, J. Ullrich, L. Str?uder, I. Schlichting, H. N. Chapman, J. C. H. Spence, and M. J. Bogan, "Single-particle structure determination by correlations of snapshot x-ray diffraction patterns," Nat. Commun. 3, 1276 (2012).
12. M. J. Buerger, Vector Space and its Application in Crystal-Structure Investigation (Wiley, New York, 1959).
13. H. He, S. Marchesini, M. Howells, U. Weierstall, G. Hembree, and J. C. H. Spence, "Experimental lensless softx- ray imaging using iterative algorithms: phasing diffuse scattering," Acta Crystallogr. A59, 143-152 (2003).
14. X. Huang, J. Nelson, J. Steinbrener, J. Kirz, J. Turner, and C. Jacobsen, "Incorrect support and missing center tolerances of phasing algorithms." Opt. Express 18, 26441-26449 (2010).
15. P. Thibault, P. Elser, C. Jacobsen, D. Shapiro, and D. Sayre, "Reconstruction of a yeast cell from x-ray diffraction data," Acta Crystallogr. A62, 248-261 (2006).
16. W. H. Press, B. P. Flannery, S. A. Teukolsky, and W. T. Vetterling, Numerical Recipes: The Art of Scientific Computing (Cambridge University Press, Cambridge, 1986).
17. A. Martin, N. Loh, C. Hampton, R. Sierra, F. Wang, A. Aquila, S. Bajt, M. Barthelmess, C. Bostedt, J. Bozek, N. Coppola, S. Epp, B. Erk, H. Fleckenstein, L. Foucar, M. Frank, H. Graafsma, L. Gumprecht, A. Hartmann, R. Hartmann, G. Hauser, H. Hirsemann, P. Holl, S. Kassemeyer, N. Kimmel, M. Liang, L. Lomb, F. Maia, S. Marchesini, K. Nass, E. Pedersoli, C. Reich, D. Rolles, B. Rudek, A. Rudenko, J. Schulz, R. Shoeman, H. Soltau, D. Starodub, J. Steinbrener, F. Stellato, L. Struder, J. Ullrich, G. Weidenspointner, T. White, C. Wunderer, A. Barty, I. Schlichting, M. Bogan, and H. Chapman, "Femtosecond dark-field imaging with an x-ray free electron laser," Opt. Express 20, 13501-13512 (2012).