메뉴 건너뛰기




Volumn 117, Issue 32, 2013, Pages 7236-7245

The use of the GSAM approach for the structural investigation of low-lying isomers of molecular clusters from density-functional-theory-based potential energy surfaces: The structures of microhydrated nucleic acid bases

Author keywords

[No Author keywords available]

Indexed keywords

BOLTZMANN; DISPERSION CONTRIBUTION; MOLECULAR CLUSTERS; NUCLEIC ACID BASIS; RELATIVE ENERGIES; STABLE CONFORMERS; STRUCTURAL INVESTIGATION; WATER MOLECULE;

EID: 84879869600     PISSN: 10895639     EISSN: 15205215     Source Type: Journal    
DOI: 10.1021/jp401130a     Document Type: Article
Times cited : (12)

References (37)
  • 1
    • 1442348414 scopus 로고    scopus 로고
    • Ab Initio Calculations for Exploring Hydration Patterns of Adenine
    • Kim, H.-T. Ab Initio Calculations for Exploring Hydration Patterns of Adenine J. Mol. Struct.: THEOCHEM. 2004, 673, 121-126
    • (2004) J. Mol. Struct.: THEOCHEM. , vol.673 , pp. 121-126
    • Kim, H.-T.1
  • 3
    • 10944261348 scopus 로고    scopus 로고
    • Infrared Cavity Ringdown Spectroscopy of Jet-Cooled Nucleotide Base Clusters and Water Complexes
    • Casaes, R. N.; Paul, J. B.; McLaughlin, R. P.; Saykally, R. J.; Van Mourik, T. Infrared Cavity Ringdown Spectroscopy of Jet-Cooled Nucleotide Base Clusters and Water Complexes J. Phys. Chem. A 2004, 108, 10989-10996
    • (2004) J. Phys. Chem. A , vol.108 , pp. 10989-10996
    • Casaes, R.N.1    Paul, J.B.2    McLaughlin, R.P.3    Saykally, R.J.4    Van Mourik, T.5
  • 4
    • 0035250117 scopus 로고    scopus 로고
    • Dipole-Bound Anions of Adenine-Water Clusters. Ab Initio Study
    • Jalbout, A. F.; Adamowicz, L. Dipole-Bound Anions of Adenine-Water Clusters. Ab Initio Study J. Phys. Chem. A 2001, 105, 1033-1038
    • (2001) J. Phys. Chem. A , vol.105 , pp. 1033-1038
    • Jalbout, A.F.1    Adamowicz, L.2
  • 5
    • 33745713330 scopus 로고    scopus 로고
    • Influence of Microhydration on the Ionization Energy Thresholds of Thymine: Comparisons of Theoretical Calculations with Experimental Values
    • Close, D. M.; Crespo-Hernández, C. E.; Gorb, L.; Leszczynski, J. Influence of Microhydration on the Ionization Energy Thresholds of Thymine: Comparisons of Theoretical Calculations with Experimental Values J. Phys. Chem. A 2006, 110, 7485-7490
    • (2006) J. Phys. Chem. A , vol.110 , pp. 7485-7490
    • Close, D.M.1    Crespo-Hernández, C.E.2    Gorb, L.3    Leszczynski, J.4
  • 7
    • 25444491781 scopus 로고    scopus 로고
    • Effect of Hydration on the Lowest Singlet ππ Excited-State Geometry of Guanine: A Theoretical Study
    • Shukla, M. K.; Leszczynski, J. Effect of Hydration on the Lowest Singlet ππ* Excited-State Geometry of Guanine: A Theoretical Study J. Phys. Chem. B 2005, 109, 17333-17339
    • (2005) J. Phys. Chem. B , vol.109 , pp. 17333-17339
    • Shukla, M.K.1    Leszczynski, J.2
  • 8
    • 45549084143 scopus 로고    scopus 로고
    • Hydration-Dependent Structural Deformation of Guanine in the Electronic Singlet Excited State
    • Shukla, M. K.; Leszczynski, J. Hydration-Dependent Structural Deformation of Guanine in the Electronic Singlet Excited State J. Phys. Chem. B 2008, 112, 5139-5152
    • (2008) J. Phys. Chem. B , vol.112 , pp. 5139-5152
    • Shukla, M.K.1    Leszczynski, J.2
  • 12
    • 0035972669 scopus 로고    scopus 로고
    • Analysis of Uracil Hydration by means of Vibrational Spectroscopy and Density Functional Calculations
    • Gaigeot, M.-P.; Kadri, C.; Ghomi, M. Analysis of Uracil Hydration by means of Vibrational Spectroscopy and Density Functional Calculations J. Mol. Struct. 2001, 565-566, 469-473
    • (2001) J. Mol. Struct. , vol.565-566 , pp. 469-473
    • Gaigeot, M.-P.1    Kadri, C.2    Ghomi, M.3
  • 13
    • 0000189651 scopus 로고
    • Density Functional Thermochemistry. III. The role of Exact Exchange
    • Becke, A. D. Density Functional Thermochemistry. III. The role of Exact Exchange The J. Chem. Phys. 1993, 98, 5648-5652
    • (1993) The J. Chem. Phys. , vol.98 , pp. 5648-5652
    • Becke, A.D.1
  • 14
    • 33751157732 scopus 로고
    • Ab Initio Calculation of Vibrational Absorption and Circular Dichroism Spectra Using Density Functional Force Fields
    • Stephens, P. J.; Devlin, F. J.; Chabalowski, C. F.; Frisch, M. J. Ab Initio Calculation of Vibrational Absorption and Circular Dichroism Spectra Using Density Functional Force Fields J. Phys. Chem. 1994, 98, 11623-11627
    • (1994) J. Phys. Chem. , vol.98 , pp. 11623-11627
    • Stephens, P.J.1    Devlin, F.J.2    Chabalowski, C.F.3    Frisch, M.J.4
  • 15
    • 0001802586 scopus 로고    scopus 로고
    • Diffusion Monte Carlo Simulations on Uracil-Water using an Anisotropic Atom-Atom Potential Model
    • Van Mourik, T.; Price, S. L.; Clary, D. C. Diffusion Monte Carlo Simulations on Uracil-Water using an Anisotropic Atom-Atom Potential Model Faraday Discuss. 2001, 118, 95-108
    • (2001) Faraday Discuss. , vol.118 , pp. 95-108
    • Van Mourik, T.1    Price, S.L.2    Clary, D.C.3
  • 16
    • 33748542952 scopus 로고    scopus 로고
    • Modeling of the 'Hydration Shell' of Uracil and Thymine in Small Water Clusters by DFT and MP2Methods
    • Danilov, V. I.; Van Mourik, T.; Poltev, V. I. Modeling of the 'Hydration Shell' of Uracil and Thymine in Small Water Clusters by DFT and MP2Methods Chem. Phys. Lett. 2006, 429, 255-260
    • (2006) Chem. Phys. Lett. , vol.429 , pp. 255-260
    • Danilov, V.I.1    Van Mourik, T.2    Poltev, V.I.3
  • 17
    • 34548515768 scopus 로고    scopus 로고
    • Indication of Water Droplet Formation in Hydrated Clusters of Cytosine and Adenine: An electronic structure study using B3LYP, LMP2 and PM6
    • Van Mourik, T.; Danilov, V. I.; Gonzalez, E.; Deriabina, A.; Poltev, V. I. Indication of Water Droplet Formation in Hydrated Clusters of Cytosine and Adenine: An electronic structure study using B3LYP, LMP2 and PM6 Chem. Phys. Lett. 2007, 445, 303-308
    • (2007) Chem. Phys. Lett. , vol.445 , pp. 303-308
    • Van Mourik, T.1    Danilov, V.I.2    Gonzalez, E.3    Deriabina, A.4    Poltev, V.I.5
  • 19
    • 59749093767 scopus 로고    scopus 로고
    • Non-genetic Global Optimization Methods in Molecular Science: An Overview
    • Calvo, F. Non-genetic Global Optimization Methods in Molecular Science: An Overview Comput. Mater. Sci. 2009, 45, 8-15
    • (2009) Comput. Mater. Sci. , vol.45 , pp. 8-15
    • Calvo, F.1
  • 22
    • 39149096599 scopus 로고    scopus 로고
    • Structural and Vibrational Determination of Small Gallium-Arsenide Clusters from CCSD(T) and DFT Calculations
    • Marchal, R.; Carbonnieìre, P.; Begue, D.; Pouchan, C. Structural and Vibrational Determination of Small Gallium-Arsenide Clusters from CCSD(T) and DFT Calculations Chem. Phys. Lett. 2008, 453, 49-54
    • (2008) Chem. Phys. Lett. , vol.453 , pp. 49-54
    • Marchal, R.1    Carbonnieìre, P.2    Begue, D.3    Pouchan, C.4
  • 27
    • 84961973425 scopus 로고    scopus 로고
    • Vibrational Analysis beyond the Harmonicity from Ab Initio Molecular Dynamics: Case of Cytosine in Its Anhydrous and Aqueous Forms
    • Carbonniere, P.; Thicoipe, S.; Very, T.; Assfeld, X. Vibrational Analysis beyond the Harmonicity from Ab Initio Molecular Dynamics: Case of Cytosine in Its Anhydrous and Aqueous Forms Int. J. Quantum Chem. 2012, 112, 2221-2230
    • (2012) Int. J. Quantum Chem. , vol.112 , pp. 2221-2230
    • Carbonniere, P.1    Thicoipe, S.2    Very, T.3    Assfeld, X.4
  • 28
    • 43849088954 scopus 로고    scopus 로고
    • Application of the PM6Method to Modeling the Solid State
    • Stewart, J. J. P. Application of the PM6Method to Modeling the Solid State J. Mol. Model 2008, 14, 499-535
    • (2008) J. Mol. Model , vol.14 , pp. 499-535
    • Stewart, J.J.P.1
  • 29
    • 36149033505 scopus 로고
    • Guided Replication of Random Chain: A New Monte Carlo Method
    • Garel, T.; Orland, H. Guided Replication of Random Chain: a New Monte Carlo Method J. Phys. A: Math. Gen. 1990, 23, L621-L626
    • (1990) J. Phys. A: Math. Gen. , vol.23
    • Garel, T.1    Orland, H.2
  • 30
    • 0000981619 scopus 로고    scopus 로고
    • On the Accurate Theoretical Determination of the Static Hyperpolarizability of Trans-butadiene
    • Maroulis, G. On the Accurate Theoretical Determination of the Static Hyperpolarizability of Trans-butadiene J. Chem. Phys. 1999, 111, 583-591
    • (1999) J. Chem. Phys. , vol.111 , pp. 583-591
    • Maroulis, G.1
  • 31
    • 33750559983 scopus 로고    scopus 로고
    • Semiempirical GGA Type Density Functional Constructed with a Long Range Dispersion Correction
    • Grimme, S. Semiempirical GGA Type Density Functional Constructed with a Long Range Dispersion Correction J. Comput. Chem. 2006, 27, 1787-1799
    • (2006) J. Comput. Chem. , vol.27 , pp. 1787-1799
    • Grimme, S.1
  • 32
    • 0037039459 scopus 로고    scopus 로고
    • Empirical Correction to Density Functional Theory for Van der Waals Interactions
    • Wu, Q.; Yang, W. Empirical Correction to Density Functional Theory for Van der Waals Interactions J. Chem. Phys. 2002, 116, 515-524
    • (2002) J. Chem. Phys. , vol.116 , pp. 515-524
    • Wu, Q.1    Yang, W.2
  • 34
    • 34547139650 scopus 로고    scopus 로고
    • Microsolvation Effects on the Electron Capturing Ability of Thymine: Thymine-Water Clusters
    • Kim, S.; Wheeler, S. E.; Schaefer, H. F. Microsolvation Effects on the Electron Capturing Ability of Thymine: Thymine-Water Clusters J. Chem. Phys. 2006, 124, 204310-1-204310-8
    • (2006) J. Chem. Phys. , vol.124 , pp. 2043101-2043108
    • Kim, S.1    Wheeler, S.E.2    Schaefer, H.F.3
  • 35
    • 80755185211 scopus 로고    scopus 로고
    • Comprehensive Benchmarking of a Density-Dependent Dispersion Correction
    • Steinmann, S. N.; Corminboeuf, C. Comprehensive Benchmarking of a Density-Dependent Dispersion Correction J. Chem. Theory Comput. 2011, 7, 3567-3577
    • (2011) J. Chem. Theory Comput. , vol.7 , pp. 3567-3577
    • Steinmann, S.N.1    Corminboeuf, C.2
  • 36
    • 66349088196 scopus 로고    scopus 로고
    • Toward Spectroscopic Studies of Biologically Relevant Systems: Vibrational Spectrum of Adenine as a Test Case for Performances of Long-Range/Dispersion Corrected Density Functionals
    • Biczysko, M.; Panek, P.; Barone, V. Toward Spectroscopic Studies of Biologically Relevant Systems: Vibrational Spectrum of Adenine as a Test Case for Performances of Long-Range/Dispersion Corrected Density Functionals Chem. Phys. Lett. 2009, 475, 105-110
    • (2009) Chem. Phys. Lett. , vol.475 , pp. 105-110
    • Biczysko, M.1    Panek, P.2    Barone, V.3
  • 37
    • 0038207997 scopus 로고    scopus 로고
    • Correlated Ab Initio Study of Nucleic Acid Bases and Their Tautomers in the Gas Phase, in a Microhydrated Environment and in Aqueous Solution. Guanine: Surprising Stabilization of Rare Tautomers in Aqueous Solution
    • Hanus, M.; Ryjácek, F.; Kabelác, M.; Kubař, T.; Bogdan, T. V.; Trygubenko, S. A.; Hobza, P. Correlated Ab Initio Study of Nucleic Acid Bases and Their Tautomers in the Gas Phase, in a Microhydrated Environment and in Aqueous Solution. Guanine: Surprising Stabilization of Rare Tautomers in Aqueous Solution J. Am. Chem. Soc. 2003, 125, 7678-7688
    • (2003) J. Am. Chem. Soc. , vol.125 , pp. 7678
    • Hanus, M.1    Ryjácek, F.2    Kabelác, M.3    Kubař, T.4    Bogdan, T.V.5    Trygubenko, S.A.6    Hobza, P.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.