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Volumn 5, Issue 6, 2013, Pages 1087-1098

A large pseudoautosomal region on the Sex chromosomes of the frog Silurana tropicalis

Author keywords

African clawed frogs; Pseudoautosomal region; Recombination; Sex chromosome; Sex determination; Xenopus tropicalis

Indexed keywords

AFRICAN CLAWED FROGS; ANIMAL; ARTICLE; FEMALE; GENE EXPRESSION; GENETICS; GENOTYPE; MALE; MOLECULAR EVOLUTION; PSEUDOAUTOSOMAL REGION; RECOMBINATION; SEX CHROMOSOME; SEX DETERMINATION; XENOPUS; XENOPUS TROPICALIS;

EID: 84879797668     PISSN: None     EISSN: 17596653     Source Type: Journal    
DOI: 10.1093/gbe/evt073     Document Type: Article
Times cited : (25)

References (47)
  • 1
    • 84863630901 scopus 로고    scopus 로고
    • Multiple sex-associated regions and a putative sex chromosome in zebrafish revealed by RAD mapping and population genomics
    • Anderson JL, et al. 2012. Multiple sex-associated regions and a putative sex chromosome in zebrafish revealed by RAD mapping and population genomics. PLoS One 7:e40701.
    • (2012) PLoS One , vol.7
    • Anderson, J.L.1
  • 2
    • 84872503128 scopus 로고    scopus 로고
    • Y-chromosome evolution: Emerging insights into processes of Y-chromosome degeneration
    • Bachtrog D. 2013. Y-chromosome evolution: emerging insights into processes of Y-chromosome degeneration. Nat Rev Genet. 14:113-124.
    • (2013) Nat Rev Genet. , vol.14 , pp. 113-124
    • Bachtrog, D.1
  • 3
    • 54449098752 scopus 로고    scopus 로고
    • Rapid SNP discovery and genetic mapping using sequenced RAD markers
    • Baird NS, et al. 2008. Rapid SNP discovery and genetic mapping using sequenced RAD markers. PLoS One 3:e3376.
    • (2008) PLoS One , vol.3
    • Baird, N.S.1
  • 4
    • 79955609628 scopus 로고    scopus 로고
    • Linkage mapping and comparative genomics using next-generation RAD sequencing of a non-model organism
    • Baxter SW, et al. 2011. Linkage mapping and comparative genomics using next-generation RAD sequencing of a non-model organism. PLoS One 6:e19315.
    • (2011) PLoS One , vol.6
    • Baxter, S.W.1
  • 5
    • 58749097041 scopus 로고    scopus 로고
    • The evolution of restricted recombination in sex chromosomes
    • Bergero R, Charlesworth D. 2009. The evolution of restricted recombination in sex chromosomes. Trends Ecol Evol. 24:94-102.
    • (2009) Trends Ecol Evol. , vol.24 , pp. 94-102
    • Bergero, R.1    Charlesworth, D.2
  • 6
    • 79952048715 scopus 로고    scopus 로고
    • Evolution of the closely related, sex-related genes DM-W and DMRT1 in African clawed frogs (Xenopus)
    • Bewick AJ, Anderson DW, Evans BJ. 2011. Evolution of the closely related, sex-related genes DM-W and DMRT1 in African clawed frogs (Xenopus). Evolution 65:698-712.
    • (2011) Evolution , vol.65 , pp. 698-712
    • Bewick, A.J.1    Anderson, D.W.2    Evans, B.J.3
  • 7
    • 38549100583 scopus 로고    scopus 로고
    • Xenbase: A Xenopus biology and genomics resource
    • Bowes JB, et al. 2009. Xenbase: a Xenopus biology and genomics resource. Nucleic Acids Res. 36:D761-D772.
    • (2009) Nucleic Acids Res. , vol.36
    • Bowes, J.B.1
  • 8
    • 83155191058 scopus 로고    scopus 로고
    • The odds of duplicate gene persistence after polyploidization
    • Chain F J J, Dushoff J, Evans BJ. 2011. The odds of duplicate gene persistence after polyploidization. BMC Genomics 12:599.
    • (2011) BMC Genomics , vol.12 , pp. 599
    • Chain, F.J.J.1    Dushoff, J.2    Evans, B.J.3
  • 9
    • 0025906872 scopus 로고
    • The evolution of sex chromosomes
    • Charlesworth B. 1991. The evolution of sex chromosomes. Science 251:1030-1033.
    • (1991) Science , vol.251 , pp. 1030-1033
    • Charlesworth, B.1
  • 11
    • 23644455954 scopus 로고    scopus 로고
    • Steps in the evolution of heteromorphic sex chromosomes
    • Charlesworth D, Charlesworth B, Mariais G. 2005. Steps in the evolution of heteromorphic sex chromosomes. Heredity 95:118-128.
    • (2005) Heredity , vol.95 , pp. 118-128
    • Charlesworth, D.1    Charlesworth, B.2    Mariais, G.3
  • 12
    • 77957839693 scopus 로고    scopus 로고
    • The birds and the bees and the flowers and the trees: Lessons from genetic mapping of sex determination in plants and animals
    • Charlesworth D, Mank JE. 2010. The birds and the bees and the flowers and the trees: lessons from genetic mapping of sex determination in plants and animals. Genetics 186:9-31.
    • (2010) Genetics , vol.186 , pp. 9-31
    • Charlesworth, D.1    Mank, J.E.2
  • 13
    • 79955483667 scopus 로고    scopus 로고
    • A framework for variation discovery and genotyping using next-generation DNA sequencing data
    • De Pristo MA, et al. 2011. A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nature 43:491-498.
    • (2011) Nature , vol.43 , pp. 491-498
    • De Pristo, M.A.1
  • 14
    • 42549159450 scopus 로고    scopus 로고
    • Genome evolution and speciation genetics of allopolyploid clawed frogs (Xenopus and Silurana)
    • Evans BJ. 2008. Genome evolution and speciation genetics of allopolyploid clawed frogs (Xenopus and Silurana). Front Biosci. 13:4687-4706.
    • (2008) Front Biosci. , vol.13 , pp. 4687-4706
    • Evans, B.J.1
  • 15
    • 4344713315 scopus 로고    scopus 로고
    • A mitochondrial DNA phylogeny of clawed frogs: Phylogeography on sub-Saharan Africa and implications for polyploid evolution
    • Evans BJ, Kelley DB, Tinsley RC, Melnick DJ, Cannatella DC. 2004. A mitochondrial DNA phylogeny of clawed frogs: phylogeography on sub-Saharan Africa and implications for polyploid evolution. Mol Phylogenet Evol. 33:197-213.
    • (2004) Mol Phylogenet Evol. , vol.33 , pp. 197-213
    • Evans, B.J.1    Kelley, D.B.2    Tinsley, R.C.3    Melnick, D.J.4    Cannatella, D.C.5
  • 16
    • 79952586356 scopus 로고    scopus 로고
    • Description of a new octoploid frog species (Anura: Pipidae: Xenopus) from the Democratic Republic of the Congo, with a discussion of the biogeography of African clawed frogs in the Albertine Rift
    • Evans BJ, et al. 2011. Description of a new octoploid frog species (Anura: Pipidae: Xenopus) from the Democratic Republic of the Congo, with a discussion of the biogeography of African clawed frogs in the Albertine Rift. J Zool 283:276-290.
    • (2011) J Zool , vol.283 , pp. 276-290
    • Evans, B.J.1
  • 17
    • 84949180400 scopus 로고    scopus 로고
    • Polyploidization and sex chromosome evolution in amphibians
    • Soltis PS, Soltis DE, editors, Springer Verlag
    • Evans BJ, Pyron RA, Wiens JJ. 2012. Polyploidization and sex chromosome evolution in amphibians. In: Soltis PS, Soltis DE, editors. Polyploidy and genome evolution. Springer Verlag. p. 385-410.
    • (2012) Polyploidy and Genome Evolution , pp. 385-410
    • Evans, B.J.1    Pyron, R.A.2    Wiens, J.J.3
  • 18
    • 0031978181 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. II. Error probabilities
    • Ewing B, Green P. 1998. Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res. 8:186-194.
    • (1998) Genome Res. , vol.8 , pp. 186-194
    • Ewing, B.1    Green, P.2
  • 19
    • 13144258721 scopus 로고    scopus 로고
    • Evolution of the avian sex chromosomes from an ancestral pair of autosomes
    • Fridolfsson A, et al. 1998. Evolution of the avian sex chromosomes from an ancestral pair of autosomes. Proc Natl Acad Sci U S A. 95:8147-8152.
    • (1998) Proc Natl Acad Sci U S A , vol.95 , pp. 8147-8152
    • Fridolfsson, A.1
  • 20
    • 77951823093 scopus 로고    scopus 로고
    • The genome of the western clawed frog Xenopus tropicalis
    • Hellsten U, et al. 2010. The genome of the western clawed frog Xenopus tropicalis. Science 328:633-636.
    • (2010) Science , vol.328 , pp. 633-636
    • Hellsten, U.1
  • 21
    • 0034849408 scopus 로고    scopus 로고
    • MrBayes: Bayesian inference of phylogenetic trees
    • Huelsenbeck JP, Ronquist F. 2001. MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics 17:754-755.
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 22
    • 84864577738 scopus 로고    scopus 로고
    • A trans-species missense SNP in Amhr2 is associated with sex determination in the tiger pufferfish, Takifugu rubipes (Fugu)
    • Kamiya T, et al. 2012. A trans-species missense SNP in Amhr2 is associated with sex determination in the tiger pufferfish, Takifugu rubipes (Fugu). PLoS Genet. 8:e1002798.
    • (2012) PLoS Genet. , vol.8
    • Kamiya, T.1
  • 23
    • 33745611378 scopus 로고    scopus 로고
    • Genomic organization of the sex-determining and adjacent regions of the sex chromosomes of medaka
    • Kondo M, et al. 2006. Genomic organization of the sex-determining and adjacent regions of the sex chromosomes of medaka. Genome Res. 16:815-826.
    • (2006) Genome Res. , vol.16 , pp. 815-826
    • Kondo, M.1
  • 24
    • 77957738197 scopus 로고    scopus 로고
    • The process of a Y-loss event in an XO/XO mammal, the Ryukyu spiny rat
    • Kuroiwa A, Ishiguchi Y, Yamada F, Shintaro A, Matsuda Y. 2010. The process of a Y-loss event in an XO/XO mammal, the Ryukyu spiny rat. Chromosoma 119:519-526.
    • (2010) Chromosoma , vol.119 , pp. 519-526
    • Kuroiwa, A.1    Ishiguchi, Y.2    Yamada, F.3    Shintaro, A.4    Matsuda, Y.5
  • 25
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li H, Durbin R. 2009. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25:1754-1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 26
    • 68549104404 scopus 로고    scopus 로고
    • The Sequence Alignment/Map (SAM) format and SAMtools
    • Li H, et al. 2009. The Sequence Alignment/Map (SAM) format and SAMtools. Bioinformatics 25:2078-2079.
    • (2009) Bioinformatics , vol.25 , pp. 2078-2079
    • Li, H.1
  • 27
    • 33845323368 scopus 로고    scopus 로고
    • Evidence for different origin of sex chromosomes in snakes, birds, and mammals and step-wise differentiation of snake sex chromosomes
    • Matsubara K, et al. 2006. Evidence for different origin of sex chromosomes in snakes, birds, and mammals and step-wise differentiation of snake sex chromosomes. Proc Natl Acad Sci U S A. 103:18190-18195.
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 18190-18195
    • Matsubara, K.1
  • 28
    • 77956295988 scopus 로고    scopus 로고
    • The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
    • McKenna A, et al. 2010. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res. 20:1297-1303.
    • (2010) Genome Res. , vol.20 , pp. 1297-1303
    • McKenna, A.1
  • 29
    • 22944456598 scopus 로고    scopus 로고
    • Uppsala University: Evolutionary Biology Centre
    • Nylander J A A. 2004. MrModeltest v2. Uppsala University: Evolutionary Biology Centre.
    • (2004) MrModeltest v2
    • Nylander, J.A.A.1
  • 30
    • 77953687958 scopus 로고    scopus 로고
    • Genotyping sex in the amphibian, Xenopus (Silurana) tropicalis, for endocrine disruptor bioassays
    • Olmstead AW, Lindberg-Livingston A, Degitz SJ. 2010. Genotyping sex in the amphibian, Xenopus (Silurana) tropicalis, for endocrine disruptor bioassays. Aquat Toxicol. 98:60-66.
    • (2010) Aquat Toxicol. , vol.98 , pp. 60-66
    • Olmstead, A.W.1    Lindberg-Livingston, A.2    Degitz, S.J.3
  • 31
    • 0000986896 scopus 로고
    • "Why polyploidy is rarer in animals than in plants" revisited
    • Orr HA. 1990. "Why polyploidy is rarer in animals than in plants" revisited. Am Nat. 136:759-770.
    • (1990) Am Nat. , vol.136 , pp. 759-770
    • Orr, H.A.1
  • 32
    • 84861353410 scopus 로고    scopus 로고
    • Sex chromosomes evolved from independent ancestral linkage groups in winged insects
    • Pease JB, Hahn MW. 2012. Sex chromosomes evolved from independent ancestral linkage groups in winged insects. Mol Biol Evol. 29:1645-1653.
    • (2012) Mol Biol Evol. , vol.29 , pp. 1645-1653
    • Pease, J.B.1    Hahn, M.W.2
  • 33
    • 70450185025 scopus 로고    scopus 로고
    • Sex reversal: A fountain of youth for sex chromosomes?
    • Perrin N. 2009. Sex reversal: a fountain of youth for sex chromosomes? Evolution 63:3043-3049.
    • (2009) Evolution , vol.63 , pp. 3043-3049
    • Perrin, N.1
  • 36
    • 15944383111 scopus 로고    scopus 로고
    • The Dahomey Gap: An abrupt climatically induced rain forest fragmentation in West Africa during the late Holocene
    • Salzmann U, Hoelzmann P. 2005. The Dahomey Gap: an abrupt climatically induced rain forest fragmentation in West Africa during the late Holocene. Holocene 15:190-199.
    • (2005) Holocene , vol.15 , pp. 190-199
    • Salzmann, U.1    Hoelzmann, P.2
  • 37
    • 78249283235 scopus 로고    scopus 로고
    • The chromosomes of Terraranan frogs
    • Schmid M, et al. 2010. The chromosomes of Terraranan frogs. Cytogenet Genome Res. 130-131:1-568.
    • (2010) Cytogenet Genome Res. , vol.130-131 , pp. 1-568
    • Schmid, M.1
  • 38
    • 0037967242 scopus 로고    scopus 로고
    • The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes
    • Skaletsky H, et al. 2003. The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. Nature 423:825-837.
    • (2003) Nature , vol.423 , pp. 825-837
    • Skaletsky, H.1
  • 39
    • 79958037603 scopus 로고    scopus 로고
    • Ever-young sex chromosomes in European tree frogs
    • Stöck M, et al. 2011. Ever-young sex chromosomes in European tree frogs. PLoS Biol. 9:e1001062.
    • (2011) PLoS Biol. , vol.9
    • Stöck, M.1
  • 40
    • 0002952875 scopus 로고    scopus 로고
    • Geographical distribution and ecology
    • Tinsley RC, Kobel HR, editors, Oxford: Clarendon Press
    • Tinsley RC, Loumont C, Kobel HR. 1996. Geographical distribution and ecology. In: Tinsley RC, Kobel HR, editors. The biology of Xenopus. Oxford: Clarendon Press. p. 35-59.
    • (1996) The Biology of Xenopus , pp. 35-59
    • Tinsley, R.C.1    Loumont, C.2    Kobel, H.R.3
  • 41
    • 33947096420 scopus 로고    scopus 로고
    • Comparison of the Z and W sex chromosomal architectures in elegant chrested tinamou (Eudromia elegans) and ostrich (Struthio camelus) and the process of sex chromosome differentiation in palaeognathous birds
    • Tsuda Y, Nishida-Umehara C, Ishijima J, Yamada K, Matsuda Y. 2007. Comparison of the Z and W sex chromosomal architectures in elegant chrested tinamou (Eudromia elegans) and ostrich (Struthio camelus) and the process of sex chromosome differentiation in palaeognathous birds. Chromosoma 116:159-173.
    • (2007) Chromosoma , vol.116 , pp. 159-173
    • Tsuda, Y.1    Nishida-Umehara, C.2    Ishijima, J.3    Yamada, K.4    Matsuda, Y.5
  • 42
    • 0000935815 scopus 로고
    • Polyploidy and cytogenetic variation in frogs of the genus Xenopus
    • Green DS, Sessions SK, editors, San Diego CA: Academic Press
    • Tymowska J. 1991. Polyploidy and cytogenetic variation in frogs of the genus Xenopus. In: Green DS, Sessions SK, editors. Amphibian cytogenetics and evolution. San Diego (CA): Academic Press. p. 259-297.
    • (1991) Amphibian Cytogenetics and Evolution , pp. 259-297
    • Tymowska, J.1
  • 43
    • 55149106554 scopus 로고    scopus 로고
    • Diversity in the origins of sex chromosomes in anurans inferred from comparative mapping of sexual differentiation genes for three species of the Ranidae and Xenopodinae
    • Uno Y, et al. 2008. Diversity in the origins of sex chromosomes in anurans inferred from comparative mapping of sexual differentiation genes for three species of the Ranidae and Xenopodinae. Chromosome Res. 16:999-1011.
    • (2008) Chromosome Res. , vol.16 , pp. 999-1011
    • Uno, Y.1
  • 44
    • 35349003202 scopus 로고    scopus 로고
    • Turnover of sex chromosomes induced by sexual conflict
    • van Doorn GS, Kirkpatrick M. 2007. Turnover of sex chromosomes induced by sexual conflict. Nature 449:909-912.
    • (2007) Nature , vol.449 , pp. 909-912
    • Van Doorn, G.S.1    Kirkpatrick, M.2
  • 45
    • 79955508157 scopus 로고    scopus 로고
    • A genetic map of Xenopus tropicalis
    • Wells DE, et al. 2011. A genetic map of Xenopus tropicalis. Dev Biol. 354:1-8.
    • (2011) Dev Biol. , vol.354 , pp. 1-8
    • Wells, D.E.1
  • 46
    • 0030683599 scopus 로고    scopus 로고
    • PAML: A program package for phylogenetic analysis by maximum likelihood
    • Yang Z. 1997. PAML: a program package for phylogenetic analysis by maximum likelihood. Comput Appl Biosci. 13:555-556.
    • (1997) Comput Appl Biosci. , vol.13 , pp. 555-556
    • Yang, Z.1
  • 47
    • 40649100327 scopus 로고    scopus 로고
    • A W-linked DM-domain gene, DM-W, participates in primary ovary development in Xenopus laevis
    • Yoshimoto S, et al. 2008. A W-linked DM-domain gene, DM-W, participates in primary ovary development in Xenopus laevis. Proc Natl Acad Sci U S A. 105:2469-2474.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 2469-2474
    • Yoshimoto, S.1


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