-
1
-
-
84863630901
-
Multiple sex-associated regions and a putative sex chromosome in zebrafish revealed by RAD mapping and population genomics
-
Anderson JL, et al. 2012. Multiple sex-associated regions and a putative sex chromosome in zebrafish revealed by RAD mapping and population genomics. PLoS One 7:e40701.
-
(2012)
PLoS One
, vol.7
-
-
Anderson, J.L.1
-
2
-
-
84872503128
-
Y-chromosome evolution: Emerging insights into processes of Y-chromosome degeneration
-
Bachtrog D. 2013. Y-chromosome evolution: emerging insights into processes of Y-chromosome degeneration. Nat Rev Genet. 14:113-124.
-
(2013)
Nat Rev Genet.
, vol.14
, pp. 113-124
-
-
Bachtrog, D.1
-
3
-
-
54449098752
-
Rapid SNP discovery and genetic mapping using sequenced RAD markers
-
Baird NS, et al. 2008. Rapid SNP discovery and genetic mapping using sequenced RAD markers. PLoS One 3:e3376.
-
(2008)
PLoS One
, vol.3
-
-
Baird, N.S.1
-
4
-
-
79955609628
-
Linkage mapping and comparative genomics using next-generation RAD sequencing of a non-model organism
-
Baxter SW, et al. 2011. Linkage mapping and comparative genomics using next-generation RAD sequencing of a non-model organism. PLoS One 6:e19315.
-
(2011)
PLoS One
, vol.6
-
-
Baxter, S.W.1
-
5
-
-
58749097041
-
The evolution of restricted recombination in sex chromosomes
-
Bergero R, Charlesworth D. 2009. The evolution of restricted recombination in sex chromosomes. Trends Ecol Evol. 24:94-102.
-
(2009)
Trends Ecol Evol.
, vol.24
, pp. 94-102
-
-
Bergero, R.1
Charlesworth, D.2
-
6
-
-
79952048715
-
Evolution of the closely related, sex-related genes DM-W and DMRT1 in African clawed frogs (Xenopus)
-
Bewick AJ, Anderson DW, Evans BJ. 2011. Evolution of the closely related, sex-related genes DM-W and DMRT1 in African clawed frogs (Xenopus). Evolution 65:698-712.
-
(2011)
Evolution
, vol.65
, pp. 698-712
-
-
Bewick, A.J.1
Anderson, D.W.2
Evans, B.J.3
-
7
-
-
38549100583
-
Xenbase: A Xenopus biology and genomics resource
-
Bowes JB, et al. 2009. Xenbase: a Xenopus biology and genomics resource. Nucleic Acids Res. 36:D761-D772.
-
(2009)
Nucleic Acids Res.
, vol.36
-
-
Bowes, J.B.1
-
8
-
-
83155191058
-
The odds of duplicate gene persistence after polyploidization
-
Chain F J J, Dushoff J, Evans BJ. 2011. The odds of duplicate gene persistence after polyploidization. BMC Genomics 12:599.
-
(2011)
BMC Genomics
, vol.12
, pp. 599
-
-
Chain, F.J.J.1
Dushoff, J.2
Evans, B.J.3
-
9
-
-
0025906872
-
The evolution of sex chromosomes
-
Charlesworth B. 1991. The evolution of sex chromosomes. Science 251:1030-1033.
-
(1991)
Science
, vol.251
, pp. 1030-1033
-
-
Charlesworth, B.1
-
11
-
-
23644455954
-
Steps in the evolution of heteromorphic sex chromosomes
-
Charlesworth D, Charlesworth B, Mariais G. 2005. Steps in the evolution of heteromorphic sex chromosomes. Heredity 95:118-128.
-
(2005)
Heredity
, vol.95
, pp. 118-128
-
-
Charlesworth, D.1
Charlesworth, B.2
Mariais, G.3
-
12
-
-
77957839693
-
The birds and the bees and the flowers and the trees: Lessons from genetic mapping of sex determination in plants and animals
-
Charlesworth D, Mank JE. 2010. The birds and the bees and the flowers and the trees: lessons from genetic mapping of sex determination in plants and animals. Genetics 186:9-31.
-
(2010)
Genetics
, vol.186
, pp. 9-31
-
-
Charlesworth, D.1
Mank, J.E.2
-
13
-
-
79955483667
-
A framework for variation discovery and genotyping using next-generation DNA sequencing data
-
De Pristo MA, et al. 2011. A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nature 43:491-498.
-
(2011)
Nature
, vol.43
, pp. 491-498
-
-
De Pristo, M.A.1
-
14
-
-
42549159450
-
Genome evolution and speciation genetics of allopolyploid clawed frogs (Xenopus and Silurana)
-
Evans BJ. 2008. Genome evolution and speciation genetics of allopolyploid clawed frogs (Xenopus and Silurana). Front Biosci. 13:4687-4706.
-
(2008)
Front Biosci.
, vol.13
, pp. 4687-4706
-
-
Evans, B.J.1
-
15
-
-
4344713315
-
A mitochondrial DNA phylogeny of clawed frogs: Phylogeography on sub-Saharan Africa and implications for polyploid evolution
-
Evans BJ, Kelley DB, Tinsley RC, Melnick DJ, Cannatella DC. 2004. A mitochondrial DNA phylogeny of clawed frogs: phylogeography on sub-Saharan Africa and implications for polyploid evolution. Mol Phylogenet Evol. 33:197-213.
-
(2004)
Mol Phylogenet Evol.
, vol.33
, pp. 197-213
-
-
Evans, B.J.1
Kelley, D.B.2
Tinsley, R.C.3
Melnick, D.J.4
Cannatella, D.C.5
-
16
-
-
79952586356
-
Description of a new octoploid frog species (Anura: Pipidae: Xenopus) from the Democratic Republic of the Congo, with a discussion of the biogeography of African clawed frogs in the Albertine Rift
-
Evans BJ, et al. 2011. Description of a new octoploid frog species (Anura: Pipidae: Xenopus) from the Democratic Republic of the Congo, with a discussion of the biogeography of African clawed frogs in the Albertine Rift. J Zool 283:276-290.
-
(2011)
J Zool
, vol.283
, pp. 276-290
-
-
Evans, B.J.1
-
17
-
-
84949180400
-
Polyploidization and sex chromosome evolution in amphibians
-
Soltis PS, Soltis DE, editors, Springer Verlag
-
Evans BJ, Pyron RA, Wiens JJ. 2012. Polyploidization and sex chromosome evolution in amphibians. In: Soltis PS, Soltis DE, editors. Polyploidy and genome evolution. Springer Verlag. p. 385-410.
-
(2012)
Polyploidy and Genome Evolution
, pp. 385-410
-
-
Evans, B.J.1
Pyron, R.A.2
Wiens, J.J.3
-
18
-
-
0031978181
-
Base-calling of automated sequencer traces using phred. II. Error probabilities
-
Ewing B, Green P. 1998. Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res. 8:186-194.
-
(1998)
Genome Res.
, vol.8
, pp. 186-194
-
-
Ewing, B.1
Green, P.2
-
19
-
-
13144258721
-
Evolution of the avian sex chromosomes from an ancestral pair of autosomes
-
Fridolfsson A, et al. 1998. Evolution of the avian sex chromosomes from an ancestral pair of autosomes. Proc Natl Acad Sci U S A. 95:8147-8152.
-
(1998)
Proc Natl Acad Sci U S A
, vol.95
, pp. 8147-8152
-
-
Fridolfsson, A.1
-
20
-
-
77951823093
-
The genome of the western clawed frog Xenopus tropicalis
-
Hellsten U, et al. 2010. The genome of the western clawed frog Xenopus tropicalis. Science 328:633-636.
-
(2010)
Science
, vol.328
, pp. 633-636
-
-
Hellsten, U.1
-
21
-
-
0034849408
-
MrBayes: Bayesian inference of phylogenetic trees
-
Huelsenbeck JP, Ronquist F. 2001. MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics 17:754-755.
-
(2001)
Bioinformatics
, vol.17
, pp. 754-755
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
-
22
-
-
84864577738
-
A trans-species missense SNP in Amhr2 is associated with sex determination in the tiger pufferfish, Takifugu rubipes (Fugu)
-
Kamiya T, et al. 2012. A trans-species missense SNP in Amhr2 is associated with sex determination in the tiger pufferfish, Takifugu rubipes (Fugu). PLoS Genet. 8:e1002798.
-
(2012)
PLoS Genet.
, vol.8
-
-
Kamiya, T.1
-
23
-
-
33745611378
-
Genomic organization of the sex-determining and adjacent regions of the sex chromosomes of medaka
-
Kondo M, et al. 2006. Genomic organization of the sex-determining and adjacent regions of the sex chromosomes of medaka. Genome Res. 16:815-826.
-
(2006)
Genome Res.
, vol.16
, pp. 815-826
-
-
Kondo, M.1
-
24
-
-
77957738197
-
The process of a Y-loss event in an XO/XO mammal, the Ryukyu spiny rat
-
Kuroiwa A, Ishiguchi Y, Yamada F, Shintaro A, Matsuda Y. 2010. The process of a Y-loss event in an XO/XO mammal, the Ryukyu spiny rat. Chromosoma 119:519-526.
-
(2010)
Chromosoma
, vol.119
, pp. 519-526
-
-
Kuroiwa, A.1
Ishiguchi, Y.2
Yamada, F.3
Shintaro, A.4
Matsuda, Y.5
-
25
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li H, Durbin R. 2009. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25:1754-1760.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
26
-
-
68549104404
-
The Sequence Alignment/Map (SAM) format and SAMtools
-
Li H, et al. 2009. The Sequence Alignment/Map (SAM) format and SAMtools. Bioinformatics 25:2078-2079.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
-
27
-
-
33845323368
-
Evidence for different origin of sex chromosomes in snakes, birds, and mammals and step-wise differentiation of snake sex chromosomes
-
Matsubara K, et al. 2006. Evidence for different origin of sex chromosomes in snakes, birds, and mammals and step-wise differentiation of snake sex chromosomes. Proc Natl Acad Sci U S A. 103:18190-18195.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 18190-18195
-
-
Matsubara, K.1
-
28
-
-
77956295988
-
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
-
McKenna A, et al. 2010. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res. 20:1297-1303.
-
(2010)
Genome Res.
, vol.20
, pp. 1297-1303
-
-
McKenna, A.1
-
29
-
-
22944456598
-
-
Uppsala University: Evolutionary Biology Centre
-
Nylander J A A. 2004. MrModeltest v2. Uppsala University: Evolutionary Biology Centre.
-
(2004)
MrModeltest v2
-
-
Nylander, J.A.A.1
-
30
-
-
77953687958
-
Genotyping sex in the amphibian, Xenopus (Silurana) tropicalis, for endocrine disruptor bioassays
-
Olmstead AW, Lindberg-Livingston A, Degitz SJ. 2010. Genotyping sex in the amphibian, Xenopus (Silurana) tropicalis, for endocrine disruptor bioassays. Aquat Toxicol. 98:60-66.
-
(2010)
Aquat Toxicol.
, vol.98
, pp. 60-66
-
-
Olmstead, A.W.1
Lindberg-Livingston, A.2
Degitz, S.J.3
-
31
-
-
0000986896
-
"Why polyploidy is rarer in animals than in plants" revisited
-
Orr HA. 1990. "Why polyploidy is rarer in animals than in plants" revisited. Am Nat. 136:759-770.
-
(1990)
Am Nat.
, vol.136
, pp. 759-770
-
-
Orr, H.A.1
-
32
-
-
84861353410
-
Sex chromosomes evolved from independent ancestral linkage groups in winged insects
-
Pease JB, Hahn MW. 2012. Sex chromosomes evolved from independent ancestral linkage groups in winged insects. Mol Biol Evol. 29:1645-1653.
-
(2012)
Mol Biol Evol.
, vol.29
, pp. 1645-1653
-
-
Pease, J.B.1
Hahn, M.W.2
-
33
-
-
70450185025
-
Sex reversal: A fountain of youth for sex chromosomes?
-
Perrin N. 2009. Sex reversal: a fountain of youth for sex chromosomes? Evolution 63:3043-3049.
-
(2009)
Evolution
, vol.63
, pp. 3043-3049
-
-
Perrin, N.1
-
35
-
-
61449230754
-
Turnover of sex chromosomes in the stickleback fishes (Gasterosteidae)
-
Ross JA, Urton JR, Boland J, Shapiro MD, Peichel CL. 2009. Turnover of sex chromosomes in the stickleback fishes (Gasterosteidae). PLoS Genet. 5:e1000391.
-
(2009)
PLoS Genet.
, vol.5
-
-
Ross, J.A.1
Urton, J.R.2
Boland, J.3
Shapiro, M.D.4
Peichel, C.L.5
-
36
-
-
15944383111
-
The Dahomey Gap: An abrupt climatically induced rain forest fragmentation in West Africa during the late Holocene
-
Salzmann U, Hoelzmann P. 2005. The Dahomey Gap: an abrupt climatically induced rain forest fragmentation in West Africa during the late Holocene. Holocene 15:190-199.
-
(2005)
Holocene
, vol.15
, pp. 190-199
-
-
Salzmann, U.1
Hoelzmann, P.2
-
37
-
-
78249283235
-
The chromosomes of Terraranan frogs
-
Schmid M, et al. 2010. The chromosomes of Terraranan frogs. Cytogenet Genome Res. 130-131:1-568.
-
(2010)
Cytogenet Genome Res.
, vol.130-131
, pp. 1-568
-
-
Schmid, M.1
-
38
-
-
0037967242
-
The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes
-
Skaletsky H, et al. 2003. The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. Nature 423:825-837.
-
(2003)
Nature
, vol.423
, pp. 825-837
-
-
Skaletsky, H.1
-
39
-
-
79958037603
-
Ever-young sex chromosomes in European tree frogs
-
Stöck M, et al. 2011. Ever-young sex chromosomes in European tree frogs. PLoS Biol. 9:e1001062.
-
(2011)
PLoS Biol.
, vol.9
-
-
Stöck, M.1
-
40
-
-
0002952875
-
Geographical distribution and ecology
-
Tinsley RC, Kobel HR, editors, Oxford: Clarendon Press
-
Tinsley RC, Loumont C, Kobel HR. 1996. Geographical distribution and ecology. In: Tinsley RC, Kobel HR, editors. The biology of Xenopus. Oxford: Clarendon Press. p. 35-59.
-
(1996)
The Biology of Xenopus
, pp. 35-59
-
-
Tinsley, R.C.1
Loumont, C.2
Kobel, H.R.3
-
41
-
-
33947096420
-
Comparison of the Z and W sex chromosomal architectures in elegant chrested tinamou (Eudromia elegans) and ostrich (Struthio camelus) and the process of sex chromosome differentiation in palaeognathous birds
-
Tsuda Y, Nishida-Umehara C, Ishijima J, Yamada K, Matsuda Y. 2007. Comparison of the Z and W sex chromosomal architectures in elegant chrested tinamou (Eudromia elegans) and ostrich (Struthio camelus) and the process of sex chromosome differentiation in palaeognathous birds. Chromosoma 116:159-173.
-
(2007)
Chromosoma
, vol.116
, pp. 159-173
-
-
Tsuda, Y.1
Nishida-Umehara, C.2
Ishijima, J.3
Yamada, K.4
Matsuda, Y.5
-
42
-
-
0000935815
-
Polyploidy and cytogenetic variation in frogs of the genus Xenopus
-
Green DS, Sessions SK, editors, San Diego CA: Academic Press
-
Tymowska J. 1991. Polyploidy and cytogenetic variation in frogs of the genus Xenopus. In: Green DS, Sessions SK, editors. Amphibian cytogenetics and evolution. San Diego (CA): Academic Press. p. 259-297.
-
(1991)
Amphibian Cytogenetics and Evolution
, pp. 259-297
-
-
Tymowska, J.1
-
43
-
-
55149106554
-
Diversity in the origins of sex chromosomes in anurans inferred from comparative mapping of sexual differentiation genes for three species of the Ranidae and Xenopodinae
-
Uno Y, et al. 2008. Diversity in the origins of sex chromosomes in anurans inferred from comparative mapping of sexual differentiation genes for three species of the Ranidae and Xenopodinae. Chromosome Res. 16:999-1011.
-
(2008)
Chromosome Res.
, vol.16
, pp. 999-1011
-
-
Uno, Y.1
-
44
-
-
35349003202
-
Turnover of sex chromosomes induced by sexual conflict
-
van Doorn GS, Kirkpatrick M. 2007. Turnover of sex chromosomes induced by sexual conflict. Nature 449:909-912.
-
(2007)
Nature
, vol.449
, pp. 909-912
-
-
Van Doorn, G.S.1
Kirkpatrick, M.2
-
45
-
-
79955508157
-
A genetic map of Xenopus tropicalis
-
Wells DE, et al. 2011. A genetic map of Xenopus tropicalis. Dev Biol. 354:1-8.
-
(2011)
Dev Biol.
, vol.354
, pp. 1-8
-
-
Wells, D.E.1
-
46
-
-
0030683599
-
PAML: A program package for phylogenetic analysis by maximum likelihood
-
Yang Z. 1997. PAML: a program package for phylogenetic analysis by maximum likelihood. Comput Appl Biosci. 13:555-556.
-
(1997)
Comput Appl Biosci.
, vol.13
, pp. 555-556
-
-
Yang, Z.1
-
47
-
-
40649100327
-
A W-linked DM-domain gene, DM-W, participates in primary ovary development in Xenopus laevis
-
Yoshimoto S, et al. 2008. A W-linked DM-domain gene, DM-W, participates in primary ovary development in Xenopus laevis. Proc Natl Acad Sci U S A. 105:2469-2474.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 2469-2474
-
-
Yoshimoto, S.1
|