메뉴 건너뛰기




Volumn 443, Issue 1, 2013, Pages 150-160

Frequency and patterns of reassortment in natural influenza A virus infection in a reservoir host

Author keywords

Anas platyrhynchos; Evolution; Influenza A virus; Mallard; Reassortment; Sentinel ducks

Indexed keywords

ARTICLE; AUTUMN; BIRD; FEMALE; GENOTYPE; INFLUENZA A; INFLUENZA VIRUS A; MALLARD; MICROBIAL DIVERSITY; MIXED INFECTION; NONHUMAN; PHENOTYPE; PHYLOGENY; PRIMARY INFECTION; PRIORITY JOURNAL; SECONDARY INFECTION; VIRUS CARRIER; VIRUS CELL INTERACTION; VIRUS ISOLATION; VIRUS LOAD; WILD ANIMAL;

EID: 84879784330     PISSN: 00426822     EISSN: 10960341     Source Type: Journal    
DOI: 10.1016/j.virol.2013.05.004     Document Type: Article
Times cited : (45)

References (55)
  • 1
    • 67649866123 scopus 로고    scopus 로고
    • Gene flow and competitive exclusion of avian influenza A virus in natual resevoir hosts
    • Bahl J., et al. Gene flow and competitive exclusion of avian influenza A virus in natual resevoir hosts. Virology 2009, 390:289-297.
    • (2009) Virology , vol.390 , pp. 289-297
    • Bahl, J.1
  • 2
    • 37849052232 scopus 로고    scopus 로고
    • The Influenza virus resource at the National Centre for Biotechnology Institute for Biotechnology Information
    • Bao Y., et al. The Influenza virus resource at the National Centre for Biotechnology Institute for Biotechnology Information. J. Virol. 2008, 82:596-601.
    • (2008) J. Virol. , vol.82 , pp. 596-601
    • Bao, Y.1
  • 3
    • 79959858420 scopus 로고    scopus 로고
    • Evolutionary analysis of inter-farm transmission dynamics in a highly pathogenic avian influenza epidemic
    • Bataille, A., et al., 2011. Evolutionary analysis of inter-farm transmission dynamics in a highly pathogenic avian influenza epidemic. PLoS Pathog. 7 (6), e1002094. http://dx.doi.org/10.1371/Journal.Ppat.1002094.
    • (2011) PLoS Pathog , vol.7 , Issue.6
    • Bataille, A.1
  • 4
    • 77952240970 scopus 로고    scopus 로고
    • Reassortment networks for investigating evolution of segmented viruses
    • Bokhari S.H., Janies D.A. Reassortment networks for investigating evolution of segmented viruses. IEEE Comp. Biol. 2010, 7:288-298.
    • (2010) IEEE Comp. Biol. , vol.7 , pp. 288-298
    • Bokhari, S.H.1    Janies, D.A.2
  • 5
    • 81455143751 scopus 로고    scopus 로고
    • Reassortment networks and the evolution of pandemic H1N1 swine-origin influenza
    • Bokhari S.H., et al. Reassortment networks and the evolution of pandemic H1N1 swine-origin influenza. IEEE/ACM Trans. Comput. Biol. Bioinformatics 2012, 9:214-227.
    • (2012) IEEE/ACM Trans. Comput. Biol. Bioinformatics , vol.9 , pp. 214-227
    • Bokhari, S.H.1
  • 6
    • 33745915522 scopus 로고    scopus 로고
    • Amplification of the entire genome of influenza A virus H1N1 and H3N2 subtypes by reverse-transcriptase polymerase chain reaction
    • Chan C.H., et al. Amplification of the entire genome of influenza A virus H1N1 and H3N2 subtypes by reverse-transcriptase polymerase chain reaction. J. Virol. Methods 2006, 136:38-43.
    • (2006) J. Virol. Methods , vol.136 , pp. 38-43
    • Chan, C.H.1
  • 7
    • 33750930708 scopus 로고    scopus 로고
    • Avian influenza virus exhibits rapid evolutionary dynamics
    • Chen R., Holmes E.C. Avian influenza virus exhibits rapid evolutionary dynamics. Mol. Biol. Evol. 2006, 23:2336-2341.
    • (2006) Mol. Biol. Evol. , vol.23 , pp. 2336-2341
    • Chen, R.1    Holmes, E.C.2
  • 8
    • 57049130912 scopus 로고    scopus 로고
    • Frequent inter-species transmission and geographic subdivision in avian influenza viruses from wild birds
    • Chen R., Holmes E.C. Frequent inter-species transmission and geographic subdivision in avian influenza viruses from wild birds. Virology 2009, 383:156-161.
    • (2009) Virology , vol.383 , pp. 156-161
    • Chen, R.1    Holmes, E.C.2
  • 9
    • 76749122795 scopus 로고    scopus 로고
    • Hitchhiking and the population genetic structure of avian influenza virus
    • Chen R., Holmes E.C. Hitchhiking and the population genetic structure of avian influenza virus. J. Mol. Evol. 2010, 70:98-105.
    • (2010) J. Mol. Evol. , vol.70 , pp. 98-105
    • Chen, R.1    Holmes, E.C.2
  • 10
    • 77955268354 scopus 로고    scopus 로고
    • Reassortment of influeza A viruses genes linked to PB1 polymerase gene
    • Downie J.C. Reassortment of influeza A viruses genes linked to PB1 polymerase gene. Int. Congr. 2004, 1263:714-718.
    • (2004) Int. Congr. , vol.1263 , pp. 714-718
    • Downie, J.C.1
  • 11
    • 44949193800 scopus 로고    scopus 로고
    • The evolutionary genetics and emergence of avian influenza A viruses in wild birds
    • e1000076, doi: 1000010.1001371/journal/ppat/1000076
    • Dugan V.G., et al. The evolutionary genetics and emergence of avian influenza A viruses in wild birds. PLoS Pathog. 2008, 4. e1000076, doi: 1000010.1001371/journal/ppat/1000076.
    • (2008) PLoS Pathog. , vol.4
    • Dugan, V.G.1
  • 12
    • 13244255415 scopus 로고    scopus 로고
    • MUSCLE: a multiple sequence alignment method with reduced time and space complexity
    • Edgar R.C. MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 2004, 5:113-132.
    • (2004) BMC Bioinformatics , vol.5 , pp. 113-132
    • Edgar, R.C.1
  • 13
    • 13944278749 scopus 로고    scopus 로고
    • Characterization of a novel influenza A virus hemagglutinin subtype (H16) obtained from Black-headed Gulls
    • Fouchier R.A.M., et al. Characterization of a novel influenza A virus hemagglutinin subtype (H16) obtained from Black-headed Gulls. J. Virol. 2005, 79:2814-2822.
    • (2005) J. Virol. , vol.79 , pp. 2814-2822
    • Fouchier, R.A.M.1
  • 14
    • 84865286374 scopus 로고    scopus 로고
    • PHYLOViZ: phylogenetic inference and data visualization for seuqnece based typing methods
    • Francisco A.P., et al. PHYLOViZ: phylogenetic inference and data visualization for seuqnece based typing methods. BMC Bioinformatics 2012, 13:87. 10.1186/1471-2105-1113-1187.
    • (2012) BMC Bioinformatics , vol.13 , pp. 87
    • Francisco, A.P.1
  • 15
    • 69249214151 scopus 로고    scopus 로고
    • Mixed infection and the genesis of influenza virus diversity
    • Ghedin E., et al. Mixed infection and the genesis of influenza virus diversity. J. Virol. 2009, 83:8832-8841.
    • (2009) J. Virol. , vol.83 , pp. 8832-8841
    • Ghedin, E.1
  • 16
    • 0034956993 scopus 로고    scopus 로고
    • Research frontiers in null model analysis
    • Gotelli N.J. Research frontiers in null model analysis. Global Ecol. Biogeogr. 2001, 10:337-343.
    • (2001) Global Ecol. Biogeogr. , vol.10 , pp. 337-343
    • Gotelli, N.J.1
  • 18
    • 0035559445 scopus 로고    scopus 로고
    • Universal primer set for the full-length amplification of all influenza A viruses
    • Hoffmann E., et al. Universal primer set for the full-length amplification of all influenza A viruses. Arch. Virol. 2001, 146:2275-2289.
    • (2001) Arch. Virol. , vol.146 , pp. 2275-2289
    • Hoffmann, E.1
  • 19
    • 79955714221 scopus 로고    scopus 로고
    • A comprehensive deep sequencing strategy for full-length genomes of influenza A
    • doi: 19010.11371/journal.pone.0019075
    • Hoper D., et al. A comprehensive deep sequencing strategy for full-length genomes of influenza A. PLoS One 2011, 6:e19075. doi: 19010.11371/journal.pone.0019075.
    • (2011) PLoS One , vol.6
    • Hoper, D.1
  • 20
    • 68049142320 scopus 로고    scopus 로고
    • Multiple alignment of DNA sequences with MAFFT
    • Katoh K., et al. Multiple alignment of DNA sequences with MAFFT. Methods Mol. Biol. 2009, 537:39-64.
    • (2009) Methods Mol. Biol. , vol.537 , pp. 39-64
    • Katoh, K.1
  • 21
    • 43049146784 scopus 로고    scopus 로고
    • Orthomyxoviridae
    • Elsevier Academic Press, San Diego, USA, C.M. Fauquet, M.A. Mayo, J. Maniloff, U. Desselberger, L.A. Ball (Eds.)
    • Kawaoka Y., et al. Orthomyxoviridae. Virus Taxonomy: Eighth Report of the International Committee for the Taxonomy of Viruses 2005, 681-693. Elsevier Academic Press, San Diego, USA. C.M. Fauquet, M.A. Mayo, J. Maniloff, U. Desselberger, L.A. Ball (Eds.).
    • (2005) Virus Taxonomy: Eighth Report of the International Committee for the Taxonomy of Viruses , pp. 681-693
    • Kawaoka, Y.1
  • 22
    • 70350221708 scopus 로고    scopus 로고
    • Reassortment patterns in swine influenza viruses
    • doi: 7310.1371/journal.pone.007366
    • Khiabanian H., et al. Reassortment patterns in swine influenza viruses. PLoS ONE 2009, 4:e7366. doi: 7310.1371/journal.pone.007366.
    • (2009) PLoS ONE , vol.4
    • Khiabanian, H.1
  • 23
    • 80053947748 scopus 로고    scopus 로고
    • Reassortment events among swine influenza A viruses in China: implications for the origin of the 2009 influenza pandemic
    • Lam T.T., et al. Reassortment events among swine influenza A viruses in China: implications for the origin of the 2009 influenza pandemic. J. Virol. 2011, 85:10279-10285.
    • (2011) J. Virol. , vol.85 , pp. 10279-10285
    • Lam, T.T.1
  • 24
    • 84879526530 scopus 로고    scopus 로고
    • Heterosubtypic immunity to influenza A virus infections in Mallards may explain existence of multpile virus subtypes
    • In Press
    • Latorre-Margalef N., et al. Heterosubtypic immunity to influenza A virus infections in Mallards may explain existence of multpile virus subtypes. PLoS Pathog. 2013, In Press.
    • (2013) PLoS Pathog.
    • Latorre-Margalef, N.1
  • 25
    • 60049083254 scopus 로고    scopus 로고
    • Effects of influenza A virus infection on migrating mallard ducks
    • Latorre-Margalef N., et al. Effects of influenza A virus infection on migrating mallard ducks. Proc. R. Soc. B 2009, 276:1029-1036.
    • (2009) Proc. R. Soc. B , vol.276 , pp. 1029-1036
    • Latorre-Margalef, N.1
  • 26
    • 84865392206 scopus 로고    scopus 로고
    • Reassortment influenza A viruses in wild duck populations: effects on viral shedding and persistence in water
    • Lebarbenchon C., et al. Reassortment influenza A viruses in wild duck populations: effects on viral shedding and persistence in water. Proc. R. Soc. B 2012, 279:3967-3975.
    • (2012) Proc. R. Soc. B , vol.279 , pp. 3967-3975
    • Lebarbenchon, C.1
  • 27
    • 4544279879 scopus 로고    scopus 로고
    • Genetic analysis of human H2N2 and early H3N2 influenza viruses, 1957-1972: evidence for genetic divergence and multiple reassortment events
    • Lindstrom S.E., et al. Genetic analysis of human H2N2 and early H3N2 influenza viruses, 1957-1972: evidence for genetic divergence and multiple reassortment events. Virology 2004, 328:101-119.
    • (2004) Virology , vol.328 , pp. 101-119
    • Lindstrom, S.E.1
  • 28
    • 34547558387 scopus 로고    scopus 로고
    • FluGenome: a web tool for genotyping influenza A virus
    • Lu G., et al. FluGenome: a web tool for genotyping influenza A virus. Nucleic Acids Res. 2007, 35:275-279.
    • (2007) Nucleic Acids Res. , vol.35 , pp. 275-279
    • Lu, G.1
  • 29
    • 73449123796 scopus 로고    scopus 로고
    • Evolutionary dynamics of human rotaviruses: balancing reassortment with preferred genome constellations
    • McDonald, S.M., et al., 2009. Evolutionary dynamics of human rotaviruses: balancing reassortment with preferred genome constellations. PLoS Pathog. 5(10), e1000634. http://dx.doi.org/10.1371/journal.ppat.1000634.
    • (2009) PLoS Pathog , vol.5 , Issue.10
    • McDonald, S.M.1
  • 30
    • 79953677207 scopus 로고    scopus 로고
    • GiRaF: robust, computational identificatin of influenza reassortments via graph mining
    • Nagarajan N., Kingsford C. GiRaF: robust, computational identificatin of influenza reassortments via graph mining. Nucleic Acids Res. 2010, 39:e34.
    • (2010) Nucleic Acids Res. , vol.39
    • Nagarajan, N.1    Kingsford, C.2
  • 31
    • 33646033777 scopus 로고    scopus 로고
    • Global patterns of influenza A virus in wild birds
    • Olsen B., et al. Global patterns of influenza A virus in wild birds. Science 2006, 312:384-388.
    • (2006) Science , vol.312 , pp. 384-388
    • Olsen, B.1
  • 32
    • 78249257293 scopus 로고    scopus 로고
    • Degenerate primers for PCR amplification and sequencing of the avian influenza A neuraminidase gene
    • Orozovic G., et al. Degenerate primers for PCR amplification and sequencing of the avian influenza A neuraminidase gene. J. Virol. Methods 2010, 170:94-98.
    • (2010) J. Virol. Methods , vol.170 , pp. 94-98
    • Orozovic, G.1
  • 33
    • 49049106062 scopus 로고    scopus 로고
    • Avian influenza virus isolated in wild waterfowl in Argentina: evience of a potentially unqie phylogenetic lineage in South America
    • Pereda A.J., et al. Avian influenza virus isolated in wild waterfowl in Argentina: evience of a potentially unqie phylogenetic lineage in South America. Virology 2008, 378:363-370.
    • (2008) Virology , vol.378 , pp. 363-370
    • Pereda, A.J.1
  • 34
    • 45849154165 scopus 로고    scopus 로고
    • JModelTest: phylogenetic model averaging
    • Posada D. jModelTest: phylogenetic model averaging. Mol. Biol. Evol. 2008, 25:1253-1256.
    • (2008) Mol. Biol. Evol. , vol.25 , pp. 1253-1256
    • Posada, D.1
  • 35
    • 33751214219 scopus 로고    scopus 로고
    • Comparison of avian and human influenza A viruses reveals a mutational bias on the viral genomes
    • Rabadan R., et al. Comparison of avian and human influenza A viruses reveals a mutational bias on the viral genomes. J. Virol. 2006, 80:11887-11891.
    • (2006) J. Virol. , vol.80 , pp. 11887-11891
    • Rabadan, R.1
  • 36
    • 84879784725 scopus 로고    scopus 로고
    • R Core Team, 2013. R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Austria
    • R Core Team, 2013. R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Austria. http://www.R-project.org
  • 37
    • 70349628591 scopus 로고    scopus 로고
    • The feasibility of using high resolution genome sequencing of Influenza A viruses to detect mixed infections and quasispecies
    • doi: 7110.1371/journal.pone.0007105
    • Ramakrishnan M.A., et al. The feasibility of using high resolution genome sequencing of Influenza A viruses to detect mixed infections and quasispecies. PloS ONE 2009, 4:e7105. doi: 7110.1371/journal.pone.0007105.
    • (2009) PloS ONE , vol.4
    • Ramakrishnan, M.A.1
  • 38
    • 84879786849 scopus 로고    scopus 로고
    • FigTree v1.1.1: Tree figure drawing tool.
    • Rambaut, A., 2008. FigTree v1.1.1: Tree figure drawing tool.
    • (2008)
    • Rambaut, A.1
  • 39
    • 44449164435 scopus 로고    scopus 로고
    • The genomic and epidemiological dynamics of human influenza A virus
    • Rambaut A., et al. The genomic and epidemiological dynamics of human influenza A virus. Nature 2008, 453:615-619.
    • (2008) Nature , vol.453 , pp. 615-619
    • Rambaut, A.1
  • 40
    • 82655173808 scopus 로고    scopus 로고
    • Interspecies transmission and limited persistence of low pathogenic avian influenza genomes among Alaska dabbling ducks
    • Reeves A.B., et al. Interspecies transmission and limited persistence of low pathogenic avian influenza genomes among Alaska dabbling ducks. Infec. Genet. Evol. 2011, 11:2004-2010.
    • (2011) Infec. Genet. Evol. , vol.11 , pp. 2004-2010
    • Reeves, A.B.1
  • 41
    • 0041386108 scopus 로고    scopus 로고
    • MRBAYES 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F., Huelsenbeck J.P. MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 2003, 19:1572-1574.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 42
    • 59049093098 scopus 로고    scopus 로고
    • The influenza virus enigma
    • Salomon R., Webster R.G. The influenza virus enigma. Cell 2009, 136:402-410.
    • (2009) Cell , vol.136 , pp. 402-410
    • Salomon, R.1    Webster, R.G.2
  • 43
    • 0018144758 scopus 로고
    • On the origin of human influenza virus subtypes H2N2 and H3N2
    • Scholtissek C., et al. On the origin of human influenza virus subtypes H2N2 and H3N2. Virology 1978, 87:13-20.
    • (1978) Virology , vol.87 , pp. 13-20
    • Scholtissek, C.1
  • 44
    • 0030745297 scopus 로고    scopus 로고
    • Coinfection of wild ducks by influenza A viruses: distribution patterns and biological significance
    • Sharp G.B., et al. Coinfection of wild ducks by influenza A viruses: distribution patterns and biological significance. J. Virol. 1997, 71:6128-6135.
    • (1997) J. Virol. , vol.71 , pp. 6128-6135
    • Sharp, G.B.1
  • 45
    • 0027197526 scopus 로고
    • Wild ducks are the resevoir for only a limited number of influenza A subtypes
    • Sharp G.B., et al. Wild ducks are the resevoir for only a limited number of influenza A subtypes. Epidemiol. Infect. 1993, 110:161-176.
    • (1993) Epidemiol. Infect. , vol.110 , pp. 161-176
    • Sharp, G.B.1
  • 46
    • 0036708315 scopus 로고    scopus 로고
    • Development of a Real-Time Reverse Transcriptase PCR assay for type A influenza virus and the avian H5 and H7 hemagglutinin subtypes
    • Spackman E., et al. Development of a Real-Time Reverse Transcriptase PCR assay for type A influenza virus and the avian H5 and H7 hemagglutinin subtypes. J Clin. Microbiol. 2002, 40:3256-3260.
    • (2002) J Clin. Microbiol. , vol.40 , pp. 3256-3260
    • Spackman, E.1
  • 47
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K., et al. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 2011, 28:2731-2739.
    • (2011) Mol. Biol. Evol. , vol.28 , pp. 2731-2739
    • Tamura, K.1
  • 48
    • 26444506691 scopus 로고    scopus 로고
    • Characterization of the 1918 influenza virus polymerase genes
    • Taubenberger J.K., et al. Characterization of the 1918 influenza virus polymerase genes. Nature 2005, 437:889-893.
    • (2005) Nature , vol.437 , pp. 889-893
    • Taubenberger, J.K.1
  • 49
    • 84876577520 scopus 로고    scopus 로고
    • Individual variation in influenza A virus infection histories and long-term immune responses in Mallards
    • doi:61210.61371/journal.pone.0061201
    • Tolf C., et al. Individual variation in influenza A virus infection histories and long-term immune responses in Mallards. PLoS ONE 2013, 8:e61201. doi:61210.61371/journal.pone.0061201.
    • (2013) PLoS ONE , vol.8
    • Tolf, C.1
  • 50
    • 44449086287 scopus 로고    scopus 로고
    • Deviation from the random distribution pattern of influenza A virus gene segments in reassortants produced under non-selective conditions
    • Varich N.L., et al. Deviation from the random distribution pattern of influenza A virus gene segments in reassortants produced under non-selective conditions. Arch. Virol. 2008, 153:1149-1154.
    • (2008) Arch. Virol. , vol.153 , pp. 1149-1154
    • Varich, N.L.1
  • 51
    • 33847385968 scopus 로고    scopus 로고
    • Surveillance of influenza A virus in migratory waterfowl in Northern Europe
    • Wallensten A., et al. Surveillance of influenza A virus in migratory waterfowl in Northern Europe. Emerg. Infect. Dis. 2007, 13:404-411.
    • (2007) Emerg. Infect. Dis. , vol.13 , pp. 404-411
    • Wallensten, A.1
  • 52
    • 0026576063 scopus 로고
    • Evolution and ecology of influenza A viruses
    • Webster R.G., et al. Evolution and ecology of influenza A viruses. Microbiol. Rev. 1992, 56:152-179.
    • (1992) Microbiol. Rev. , vol.56 , pp. 152-179
    • Webster, R.G.1
  • 53
    • 80052742099 scopus 로고    scopus 로고
    • Influenza A viruses in ducks in Northwestern Minnesota: fine scale spatial and temporal variation in prevalence and subtype diversity
    • doi: 24010.21371/journal.pone.0024010
    • Wilcox B.R., et al. Influenza A viruses in ducks in Northwestern Minnesota: fine scale spatial and temporal variation in prevalence and subtype diversity. PLoS ONE 2011, 6:e24010. doi: 24010.21371/journal.pone.0024010.
    • (2011) PLoS ONE , vol.6
    • Wilcox, B.R.1
  • 54
    • 79958842076 scopus 로고    scopus 로고
    • Extensive geographic mosaicism in avian influenza viruses from gulls in the northern hemisphere
    • doi:20610.21371/journal.pone.0020664
    • Wille M., et al. Extensive geographic mosaicism in avian influenza viruses from gulls in the northern hemisphere. PLoS ONE 2011, 6:e20664. doi:20610.21371/journal.pone.0020664.
    • (2011) PLoS ONE , vol.6
    • Wille, M.1
  • 55
    • 67650656918 scopus 로고    scopus 로고
    • Invasions by Eurasian avian influenza virus H6 genes and replacement of its North American clade
    • zu Donha H., et al. Invasions by Eurasian avian influenza virus H6 genes and replacement of its North American clade. Emerg. Infect. Dis. 2009, 15:1040-1045.
    • (2009) Emerg. Infect. Dis. , vol.15 , pp. 1040-1045
    • zu Donha, H.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.