-
1
-
-
79952201936
-
Exploring the oral microbiota of children at various developmental stages of their dentition in the relation to their oral health
-
Crielaard W, Zaura E, Schuller AA, Huse SM, Montijn RC, et al. (2011) Exploring the oral microbiota of children at various developmental stages of their dentition in the relation to their oral health. BMC Med Genomics 4: 22.
-
(2011)
BMC Med Genomics
, vol.4
, pp. 22
-
-
Crielaard, W.1
Zaura, E.2
Schuller, A.A.3
Huse, S.M.4
Montijn, R.C.5
-
2
-
-
67650758032
-
Is obesity an oral bacterial disease?
-
Goodson JM, Groppo D, Halem S, Carpino E, (2009) Is obesity an oral bacterial disease? J Dent Res 88: 519-523.
-
(2009)
J Dent Res
, vol.88
, pp. 519-523
-
-
Goodson, J.M.1
Groppo, D.2
Halem, S.3
Carpino, E.4
-
3
-
-
27344434131
-
The salivary microbiota as a diagnostic indicator of oral cancer: a descriptive, non-randomized study of cancer-free and oral squamous cell carcinoma subjects
-
Mager DL, Haffajee AD, Devlin PM, Norris CM, Posner MR, et al. (2005) The salivary microbiota as a diagnostic indicator of oral cancer: a descriptive, non-randomized study of cancer-free and oral squamous cell carcinoma subjects. J Transl Med 3: 27.
-
(2005)
J Transl Med
, vol.3
, pp. 27
-
-
Mager, D.L.1
Haffajee, A.D.2
Devlin, P.M.3
Norris, C.M.4
Posner, M.R.5
-
5
-
-
0038260204
-
A bacteriologic census of human saliva
-
Richardson RL, Jones M, (1958) A bacteriologic census of human saliva. J Dent Res 37: 697-709.
-
(1958)
J Dent Res
, vol.37
, pp. 697-709
-
-
Richardson, R.L.1
Jones, M.2
-
6
-
-
0015156689
-
Quantitative studies on the salivary flora
-
Ross PW, (1971) Quantitative studies on the salivary flora. Journal of clinical pathology 24: 717-720.
-
(1971)
Journal of Clinical Pathology
, vol.24
, pp. 717-720
-
-
Ross, P.W.1
-
7
-
-
82555183004
-
The Human Oral Microbiome Database: a web accessible resource for investigating oral microbe taxonomic and genomic information
-
Chen T, Yu WH, Izard J, Baranova OV, Lakshmanan A, et al. (2010) The Human Oral Microbiome Database: a web accessible resource for investigating oral microbe taxonomic and genomic information. Database (Oxford) 2010: baq013.
-
(2010)
Database (Oxford)
, vol.2010
-
-
Chen, T.1
Yu, W.H.2
Izard, J.3
Baranova, O.V.4
Lakshmanan, A.5
-
8
-
-
0141673379
-
Distribution of selected bacterial species on intraoral surfaces
-
Mager DL, Ximenez-Fyvie LA, Haffajee AD, Socransky SS, (2003) Distribution of selected bacterial species on intraoral surfaces. J Clin Periodontol 30: 644-654.
-
(2003)
J Clin Periodontol
, vol.30
, pp. 644-654
-
-
Mager, D.L.1
Ximenez-Fyvie, L.A.2
Haffajee, A.D.3
Socransky, S.S.4
-
9
-
-
80051514697
-
Comparative analysis of salivary bacterial microbiome diversity in edentulous infants and their mothers or primary care givers using pyrosequencing
-
Cephas KD, Kim J, Mathai RA, Barry KA, Dowd SE, et al. (2011) Comparative analysis of salivary bacterial microbiome diversity in edentulous infants and their mothers or primary care givers using pyrosequencing. PLoS ONE 6: e23503.
-
(2011)
PLoS ONE
, vol.6
-
-
Cephas, K.D.1
Kim, J.2
Mathai, R.A.3
Barry, K.A.4
Dowd, S.E.5
-
10
-
-
58149218590
-
Pyrosequencing analysis of the oral microflora of healthy adults
-
Keijser BJ, Zaura E, Huse SM, van der Vossen JM, Schuren FH, et al. (2008) Pyrosequencing analysis of the oral microflora of healthy adults. J Dent Res 87: 1016-1020.
-
(2008)
J Dent Res
, vol.87
, pp. 1016-1020
-
-
Keijser, B.J.1
Zaura, E.2
Huse, S.M.3
van der Vossen, J.M.4
Schuren, F.H.5
-
11
-
-
77957168527
-
Study of inter- and intra-individual variations in the salivary microbiota
-
Lazarevic V, Whiteson K, Hernandez D, François P, Schrenzel J, (2010) Study of inter- and intra-individual variations in the salivary microbiota. BMC Genomics 11: 523.
-
(2010)
BMC Genomics
, vol.11
, pp. 523
-
-
Lazarevic, V.1
Whiteson, K.2
Hernandez, D.3
François, P.4
Schrenzel, J.5
-
12
-
-
74949134895
-
Defining the healthy "core microbiome" of oral microbial communities
-
Zaura E, Keijser BJ, Huse SM, Crielaard W, (2009) Defining the healthy "core microbiome" of oral microbial communities. BMC Microbiol 9: 259.
-
(2009)
BMC Microbiol
, vol.9
, pp. 259
-
-
Zaura, E.1
Keijser, B.J.2
Huse, S.M.3
Crielaard, W.4
-
13
-
-
84861513026
-
Analysis of the salivary microbiome using culture-independent techniques
-
Lazarevic V, Whiteson K, Gaia N, Gizard Y, Hernandez D, et al. (2012) Analysis of the salivary microbiome using culture-independent techniques. J Clin Bioinforma 2: 4.
-
(2012)
J Clin Bioinforma
, vol.2
, pp. 4
-
-
Lazarevic, V.1
Whiteson, K.2
Gaia, N.3
Gizard, Y.4
Hernandez, D.5
-
14
-
-
27744573022
-
Defining the normal bacterial flora of the oral cavity
-
Aas JA, Paster BJ, Stokes LN, Olsen I, Dewhirst FE, (2005) Defining the normal bacterial flora of the oral cavity. J Clin Microbiol 43: 5721-5732.
-
(2005)
J Clin Microbiol
, vol.43
, pp. 5721-5732
-
-
Aas, J.A.1
Paster, B.J.2
Stokes, L.N.3
Olsen, I.4
Dewhirst, F.E.5
-
15
-
-
69949120119
-
Comparisons of subgingival microbial profiles of refractory periodontitis, severe periodontitis, and periodontal health using the human oral microbe identification microarray
-
Colombo AP, Boches SK, Cotton SL, Goodson JM, Kent R, et al. (2009) Comparisons of subgingival microbial profiles of refractory periodontitis, severe periodontitis, and periodontal health using the human oral microbe identification microarray. J Periodontol 80: 1421-1432.
-
(2009)
J Periodontol
, vol.80
, pp. 1421-1432
-
-
Colombo, A.P.1
Boches, S.K.2
Cotton, S.L.3
Goodson, J.M.4
Kent, R.5
-
16
-
-
39149112256
-
Microbiological diversity of generalized aggressive periodontitis by 16S rRNA clonal analysis
-
Faveri M, Mayer MP, Feres M, de Figueiredo LC, Dewhirst FE, et al. (2008) Microbiological diversity of generalized aggressive periodontitis by 16S rRNA clonal analysis. Oral Microbiol Immunol 23: 112-118.
-
(2008)
Oral Microbiol Immunol
, vol.23
, pp. 112-118
-
-
Faveri, M.1
Mayer, M.P.2
Feres, M.3
de Figueiredo, L.C.4
Dewhirst, F.E.5
-
17
-
-
70350125099
-
Human gut microbiome adopts an alternative state following small bowel transplantation
-
Hartman AL, Lough DM, Barupal DK, Fiehn O, Fishbein T, et al. (2009) Human gut microbiome adopts an alternative state following small bowel transplantation. Proc Natl Acad Sci U S A 106: 17187-17192.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 17187-17192
-
-
Hartman, A.L.1
Lough, D.M.2
Barupal, D.K.3
Fiehn, O.4
Fishbein, T.5
-
18
-
-
72949107142
-
Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities
-
Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, et al. (2009) Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 75: 7537-7541.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 7537-7541
-
-
Schloss, P.D.1
Westcott, S.L.2
Ryabin, T.3
Hall, J.R.4
Hartmann, M.5
-
19
-
-
84857122937
-
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
-
McDonald D, Price MN, Goodrich J, Nawrocki EP, DeSantis TZ, et al. (2012) An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea. The ISME journal 6: 610-618.
-
(2012)
The ISME Journal
, vol.6
, pp. 610-618
-
-
McDonald, D.1
Price, M.N.2
Goodrich, J.3
Nawrocki, E.P.4
DeSantis, T.Z.5
-
20
-
-
77955251092
-
Ironing out the wrinkles in the rare biosphere through improved OTU clustering
-
Huse SM, Welch DM, Morrison HG, Sogin ML, (2010) Ironing out the wrinkles in the rare biosphere through improved OTU clustering. Environmental microbiology 12: 1889-1898.
-
(2010)
Environmental Microbiology
, vol.12
, pp. 1889-1898
-
-
Huse, S.M.1
Welch, D.M.2
Morrison, H.G.3
Sogin, M.L.4
-
21
-
-
79961181125
-
UCHIME improves sensitivity and speed of chimera detection
-
Edgar RC, Haas BJ, Clemente JC, Quince C, Knight R, (2011) UCHIME improves sensitivity and speed of chimera detection. Bioinformatics 27: 2194-2200.
-
(2011)
Bioinformatics
, vol.27
, pp. 2194-2200
-
-
Edgar, R.C.1
Haas, B.J.2
Clemente, J.C.3
Quince, C.4
Knight, R.5
-
22
-
-
34548293679
-
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
-
Wang Q, Garrity GM, Tiedje JM, Cole JR, (2007) Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 73: 5261-5267.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 5261-5267
-
-
Wang, Q.1
Garrity, G.M.2
Tiedje, J.M.3
Cole, J.R.4
-
23
-
-
77949718257
-
FastTree 2-approximately maximum-likelihood trees for large alignments
-
Price MN, Dehal PS, Arkin AP, (2010) FastTree 2-approximately maximum-likelihood trees for large alignments. PLoS ONE 5: e9490.
-
(2010)
PLoS ONE
, vol.5
-
-
Price, M.N.1
Dehal, P.S.2
Arkin, A.P.3
-
24
-
-
73449128271
-
Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data
-
Hamady M, Lozupone C, Knight R, (2010) Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data. ISME J 4: 17-27.
-
(2010)
ISME J
, vol.4
, pp. 17-27
-
-
Hamady, M.1
Lozupone, C.2
Knight, R.3
-
25
-
-
79952006773
-
Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons
-
Haas BJ, Gevers D, Earl AM, Feldgarden M, Ward DV, et al. (2011) Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons. Genome Research 21: 494-504.
-
(2011)
Genome Research
, vol.21
, pp. 494-504
-
-
Haas, B.J.1
Gevers, D.2
Earl, A.M.3
Feldgarden, M.4
Ward, D.V.5
-
26
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ, (1990) Basic local alignment search tool. J Mol Biol 215: 403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
27
-
-
77949601825
-
CD-HIT Suite: a web server for clustering and comparing biological sequences
-
Huang Y, Niu B, Gao Y, Fu L, Li W, (2010) CD-HIT Suite: a web server for clustering and comparing biological sequences. Bioinformatics 26: 680-682.
-
(2010)
Bioinformatics
, vol.26
, pp. 680-682
-
-
Huang, Y.1
Niu, B.2
Gao, Y.3
Fu, L.4
Li, W.5
-
28
-
-
58149200948
-
The Ribosomal Database Project: improved alignments and new tools for rRNA analysis
-
Cole JR, Wang Q, Cardenas E, Fish J, Chai B, et al. (2009) The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res 37: D141-145.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Cole, J.R.1
Wang, Q.2
Cardenas, E.3
Fish, J.4
Chai, B.5
-
29
-
-
0000286531
-
An ordination of the upland forest communities of southern Wisconsin
-
Bray R, Curtis JT, (1957) An ordination of the upland forest communities of southern Wisconsin. Ecological Monographs 27: 325-334.
-
(1957)
Ecological Monographs
, vol.27
, pp. 325-334
-
-
Bray, R.1
Curtis, J.T.2
-
30
-
-
0031284508
-
Species assemblages and indicator species: The need for a flexible asymmetrical approach
-
Dufrêne M, Legendre P, (1997) Species assemblages and indicator species: The need for a flexible asymmetrical approach. Ecological Monographs 67: 345-366.
-
(1997)
Ecological Monographs
, vol.67
, pp. 345-366
-
-
Dufrêne, M.1
Legendre, P.2
-
32
-
-
84988012964
-
The salivary microbiome assessed by a high-throughput and culture-independent approach
-
Lazarevic V, Whiteson K, François P, Schrenzel J, (2011) The salivary microbiome assessed by a high-throughput and culture-independent approach. Journal of Integrated Omics 1: 25-35.
-
(2011)
Journal of Integrated Omics
, vol.1
, pp. 25-35
-
-
Lazarevic, V.1
Whiteson, K.2
François, P.3
Schrenzel, J.4
-
33
-
-
84861546470
-
High-throughput sequencing of 16S rRNA gene amplicons: effects of extraction procedure, primer length and annealing temperature
-
Sergeant MJ, Constantinidou C, Cogan T, Penn CW, Pallen MJ, (2012) High-throughput sequencing of 16S rRNA gene amplicons: effects of extraction procedure, primer length and annealing temperature. PLoS ONE 7: e38094.
-
(2012)
PLoS ONE
, vol.7
-
-
Sergeant, M.J.1
Constantinidou, C.2
Cogan, T.3
Penn, C.W.4
Pallen, M.J.5
-
34
-
-
78751575501
-
UniFrac: an effective distance metric for microbial community comparison
-
Lozupone C, Lladser ME, Knights D, Stombaugh J, Knight R, (2011) UniFrac: an effective distance metric for microbial community comparison. ISME J 5: 169-172.
-
(2011)
ISME J
, vol.5
, pp. 169-172
-
-
Lozupone, C.1
Lladser, M.E.2
Knights, D.3
Stombaugh, J.4
Knight, R.5
-
35
-
-
77955874456
-
Direct sequencing of the human microbiome readily reveals community differences
-
Kuczynski J, Costello EK, Nemergut DR, Zaneveld J, Lauber CL, et al. (2010) Direct sequencing of the human microbiome readily reveals community differences. Genome Biol 11: 210.
-
(2010)
Genome Biol
, vol.11
, pp. 210
-
-
Kuczynski, J.1
Costello, E.K.2
Nemergut, D.R.3
Zaneveld, J.4
Lauber, C.L.5
-
36
-
-
84863292680
-
Deep sequencing analyses of low density microbial communities: working at the boundary of accurate microbiota detection
-
Biesbroek G, Sanders EA, Roeselers G, Wang X, Caspers MP, et al. (2012) Deep sequencing analyses of low density microbial communities: working at the boundary of accurate microbiota detection. PLoS ONE 7: e32942.
-
(2012)
PLoS ONE
, vol.7
-
-
Biesbroek, G.1
Sanders, E.A.2
Roeselers, G.3
Wang, X.4
Caspers, M.P.5
-
37
-
-
84862072074
-
Simplified protocols for the preparation of genomic DNA from bacterial cultures
-
In: Kowalchuk GA, de Bruijn FJ, Head IM, Akkermans ADL, van Elsas JD, editors. Dordrecht: Kluwer Academic Publishers
-
Moore ERB, Arnscheidt A, Krüger A, Strömpl C, Mau M (2004) Simplified protocols for the preparation of genomic DNA from bacterial cultures. In: Kowalchuk GA, de Bruijn FJ, Head IM, Akkermans ADL, van Elsas JD, editors. Molecular Microbial Ecology Manual. Dordrecht: Kluwer Academic Publishers. 3-18.
-
(2004)
Molecular Microbial Ecology Manual
, pp. 3-18
-
-
Moore, E.R.B.1
Arnscheidt, A.2
Krüger, A.3
Strömpl, C.4
Mau, M.5
-
38
-
-
84859726078
-
Comparison of DNA extraction methods for microbial community profiling with an application to pediatric bronchoalveolar lavage samples
-
Willner D, Daly J, Whiley D, Grimwood K, Wainwright CE, et al. (2012) Comparison of DNA extraction methods for microbial community profiling with an application to pediatric bronchoalveolar lavage samples. PLoS ONE 7: e34605.
-
(2012)
PLoS ONE
, vol.7
-
-
Willner, D.1
Daly, J.2
Whiley, D.3
Grimwood, K.4
Wainwright, C.E.5
-
39
-
-
84858763397
-
Evaluation of methods for the extraction and purification of DNA from the human microbiome
-
Yuan S, Cohen DB, Ravel J, Abdo Z, Forney LJ, (2012) Evaluation of methods for the extraction and purification of DNA from the human microbiome. PLoS ONE 7: e33865.
-
(2012)
PLoS ONE
, vol.7
-
-
Yuan, S.1
Cohen, D.B.2
Ravel, J.3
Abdo, Z.4
Forney, L.J.5
|