Identification and Characterization of Highly Divergent Simian Foamy Viruses in a Wide Range of New World Primates from Brazil

PLoS ONE

Volumn 8, Issue 7, 2013, Pages

  Muniz, Cláudia P ^a   Troncoso, Lian L ^a   Moreira, Miguel A ^b   Soares, Esmeralda A ^b   Pissinatti, Alcides ^c   Bonvicino, Cibele R ^b,d   Seuánez, Héctor N ^a,b   Sharma, Bechan ^e   Jia, Hongwei ^f   Shankar, Anupama ^f   Switzer, William M ^f   Santos, André F ^a   Soares, Marcelo A ^a,b  

^a FEDERAL UNIVERSITY OF RIO DE JANEIRO   (Brazil)

^b INSTITUTO NACIONAL DE CÂNCER   (Brazil)

^c Centro de Primatologia do Rio de Janeiro   (Brazil)

^d INSTITUTO OSWALDO CRUZ   (Brazil)

^e UNIVERSITY OF ALLAHABAD   (India)

^f CENTERS FOR DISEASE CONTROL AND PREVENTION   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

GENOMIC DNA; SIMIAN FOAMY VIRUS POLYMERASE; UNCLASSIFIED DRUG; VIRUS ENZYME;

ALOUATTA; ARTICLE; BRAZIL; CALLITRICHINAE; CEBUS; GENE SEQUENCE; GENETIC VARIABILITY; GROUP SPECIFIC ANTIGEN GENE; INFECTION RISK; LONG TERMINAL REPEAT; MOLECULAR EPIDEMIOLOGY; MOLECULAR EVOLUTION; MOLECULAR GENETICS; NEW WORLD PRIMATE; NONHUMAN; NUCLEOTIDE SEQUENCE; PREVALENCE; PRIMATE; RETROVIRUS INFECTION; SEQUENCE ANALYSIS; SIMIAN FOAMY VIRUS; SPECIES DISTRIBUTION; SPIDER MONKEY; STRUCTURAL GENE; VIRAL GENETICS; VIRUS CHARACTERIZATION; VIRUS GENE; VIRUS IDENTIFICATION; VIRUS STRAIN; VIRUS TRANSMISSION;

ANIMALS; BRAZIL; EVOLUTION, MOLECULAR; GENES, VIRAL; GENETIC VARIATION; GEOGRAPHY, MEDICAL; HOST-PATHOGEN INTERACTIONS; HUMANS; MOLECULAR SEQUENCE DATA; MONKEY DISEASES; PHYLOGENY; PLATYRRHINI; PREVALENCE; RETROVIRIDAE INFECTIONS; SIMIAN FOAMY VIRUS;

ALOUATTA; ATELES SP.; CEBUS XANTHOSTERNOS; HUMAN SPUMARETROVIRUS; MAMMALIA; MARMOSETS; PRIMATES; RABBIT FIBROMA VIRUS; SAIMIRI; SIMIAN FOAMY VIRUS;

EID: 84879753679     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0067568     Document Type: Article

References (47)

1. Aguzzi A, (1993) The foamy virus family: molecular biology, epidemiology and neuropathology. Biochim Biophys Acta 1155: 1-24.
2. Khan AS, (2009) Simian foamy virus infection in humans: prevalence and management. Expert Rev Anti Infect Ther 7: 569-580.
3. Kupiec JJ, Kay A, Hayat M, Ravier R, Peries J, et al. (1991) Sequence analysis of the simian foamy virus type 1 genome. Gene 101: 185-194.
4. Herchenroder O, Renne R, Loncar D, Cobb EK, Murthy KK, et al. (1994) Isolation, cloning, and sequencing of simian foamy viruses from chimpanzees (SFVcpz): high homology to human foamy virus (HFV). Virology 201: 187-199.
5. Blewett EL, Black DH, Lerche NW, White G, Eberle R, (2000) Simian foamy virus infections in a baboon breeding colony. Virology 278: 183-193.
6. Mouinga-Ondeme A, Betsem E, Caron M, Makuwa M, Salle B, et al. (2010) Two distinct variants of simian foamy virus in naturally infected mandrills (Mandrillus sphinx) and cross-species transmission to humans. Retrovirology 7: 105.
7. Ayouba A, Duval L, Liegeois F, Ngin S, Ahuka-Mundeke S, et al. (2013) Nonhuman Primate Retroviruses from Cambodia: High Simian Foamy Virus Prevalence, Identification of Divergent STLV-1 strains and No Evidence of SIV Infection. Infect Genet Evol 18: In press.
8. Boneva RS, Switzer WM, Spira TJ, Bhullar VB, Shanmugam V, et al. (2007) Clinical and virological characterization of persistent human infection with simian foamy viruses. AIDS Res Hum Retroviruses 23: 1330-1337.
9. Switzer WM, Heneine W (2011) Foamy Viruses. In: Liu D, editor. Molecular Detection of Viral Pathogens. Boca Raton: CRC Press. 131-146.
10. Gessain A, Calattini S, (2008) Emergence of simian foamy viruses in humans: facts and unanswered questions. Fut Virol 3: 71-81.
11. Huang F, Wang H, Jing S, Zeng W, (2012) Simian foamy virus prevalence in Macaca mulatta and zookeepers. AIDS Res Hum Retroviruses 28: 591-593.
12. Switzer WM, Tang S, Ahuka-Mundeke S, Shankar A, Hanson DL, et al. (2012) Novel simian foamy virus infections from multiple monkey species in women from the Democratic Republic of Congo. Retrovirology 9: 100.
13. Wolfe ND, Prosser TA, Carr JK, Tamoufe U, Mpoudi-Ngole E, et al. (2004) Exposure to nonhuman primates in rural Cameroon. Emerg Infect Dis 10: 2094-2099.
14. Switzer WM, Bhullar V, Shanmugam V, Cong ME, Parekh B, et al. (2004) Frequent simian foamy virus infection in persons occupationally exposed to nonhuman primates. J Virol 78: 2780-2789.
15. Sandstrom PA, Phan KO, Switzer WM, Fredeking T, Chapman L, et al. (2000) Simian foamy virus infection among zoo keepers. Lancet 355: 551-552.
16. Betsem E, Rua R, Tortevoye P, Froment A, Gessain A, (2011) Frequent and recent human acquisition of simian foamy viruses through apes' bites in central Africa. PLoS Pathog 7: e1002306.
17. Mouinga-Ondeme A, Caron M, Nkoghe D, Telfer P, Marx P, et al. (2012) Cross-species transmission of simian foamy virus to humans in rural Gabon, Central Africa. J Virol 86: 1255-1260.
18. Moreira MA, Bonvicino CR, Soares MA, Seuanez HN, (2010) Genetic diversity of neotropical primates: phylogeny, population genetics, and animal models for infectious diseases. Cytogenet Genome Res 128: 88-98.
19. Groves C (2005) Mammal Species of the World A Taxonomic and Geographic Reference. In: Wilson DER, D M., editor. Baltimore: Johns Hopkins University Press. 111-184.
20. Thumer L, Rethwilm A, Holmes EC, Bodem J, (2007) The complete nucleotide sequence of a New World simian foamy virus. Virology 369: 191-197.
21. Pacheco B, Finzi A, McGee-Estrada K, Sodroski J, (2010) Species-specific inhibition of foamy viruses from South American monkeys by New World Monkey TRIM5{alpha} proteins. J Virol 84: 4095-4099.
22. Casado F, Bonvicino CR, Nagle C, Comas B, Manzur TD, et al. (2010) Mitochondrial divergence between 2 populations of the hooded capuchin, Cebus (Sapajus) cay (Platyrrhini, Primates). J Hered 101: 261-269.
23. Menezes AN, Bonvicino CR, Seuanez HN, (2010) Identification, classification and evolution of owl monkeys (Aotus, Illiger 1811). BMC Evol Biol 10: 248.
24. Nascimento FF, Bonvicino CR, de Oliveira MM, Schneider MP, Seuanez HN, (2008) Population genetic studies of Alouatta belzebul from the Amazonian and Atlantic Forests. Am J Primatol 70: 423-431.
25. Soares EA, Menezes AN, Schrago CG, Moreira MA, Bonvicino CR, et al. (2010) Evolution of TRIM5alpha B30.2 (SPRY) domain in New World primates. Infect Genet Evol 10: 246-253.
26. Irwin DM, Kocher TD, Wilson AC, (1991) Evolution of the cytochrome b gene of mammals. J Mol Evol 32: 128-144.
27. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, et al. (2011) MEGA5: Molecular Evolutionary Genetics Analysis using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods. Mol Biol Evol 28: 2731-2739.
28. Schmidt HA, Strimmer K, Vingron M, von Haeseler A, (2002) TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics 18: 502-504.
29. Xia X, Xie Z, Salemi M, Chen L, Wang Y, (2003) An index of substitution saturation and its application. Mol Phylogenet Evol 26: 1-7.
30. Perelman P, Johnson WE, Roos C, Seuanez HN, Horvath JE, et al. (2011) A molecular phylogeny of living primates. PLoS Genet 7: e1001342.
31. Page RDM, (1994) Parallel phylogenies: REeconstructing the history of host-parasite assemblages. Cladistics 10: 155-173.
32. Hussain AI, Shanmugam V, Bhullar VB, Beer BE, Vallet D, et al. (2003) Screening for simian foamy virus infection by using a combined antigen Western blot assay: evidence for a wide distribution among Old World primates and identification of four new divergent viruses. Virology 309: 248-257.
33. Switzer W, Jia H KD, Shanmugam V, Heneine W (2009) Seroprevalence of Human Infection with Simian Foamy Virus from New World Primates. 16th Conference on Retroviruses and Opportunistic Infection. Montreal. pp. [abstract # 302].
34. Leendertz SA, Junglen S, Hedemann C, Goffe A, Calvignac S, et al. (2010) High prevalence, coinfection rate, and genetic diversity of retroviruses in wild red colobus monkeys (Piliocolobus badius badius) in Tai National Park, Cote d'Ivoire. J Virol 84: 7427-7436.
35. Liu W, Worobey M, Li Y, Keele BF, Bibollet-Ruche F, et al. (2008) Molecular ecology and natural history of simian foamy virus infection in wild-living chimpanzees. PLoS Pathog 4: e1000097.
36. Switzer WM, Salemi M, Shanmugam V, Gao F, Cong ME, et al. (2005) Ancient co-speciation of simian foamy viruses and primates. Nature 434: 376-380.
37. Murray SM, Linial ML, (2006) Foamy virus infection in primates. J Med Primatol 35: 225-235.
38. Han GZ, Worobey M, (2012) An endogenous foamy virus in the aye-aye (Daubentonia madagascariensis). J Virol 86: 7696-7698.
39. Leendertz FH, Zirkel F, Couacy-Hymann E, Ellerbrok H, Morozov VA, et al. (2008) Interspecies transmission of simian foamy virus in a natural predator-prey system. J Virol 82: 7741-7744.
40. Bergsten H, (2005) A review of long-branch attraction. Cladistics 21: 163-193.
41. Ling B, Apetrei C, Pandrea I, Veazey RS, Lackner AA, et al. (2004) Classic AIDS in a sooty mangabey after an 18-year natural infection. J Virol 78: 8902-8908.
42. Etienne L, Nerrienet E, LeBreton M, Bibila GT, Foupouapouognigni Y, et al. (2011) Characterization of a new simian immunodeficiency virus strain in a naturally infected Pan troglodytes troglodytes chimpanzee with AIDS related symptoms. Retrovirology 8: 4.
43. Keele BF, Jones JH, Terio KA, Estes JD, Rudicell RS, et al. (2009) Increased mortality and AIDS-like immunopathology in wild chimpanzees infected with SIVcpz. Nature 460: 515-519.
44. Schweizer M, Falcone V, Gange J, Turek R, Neumann-Haefelin D, (1997) Simian foamy virus isolated from an accidentally infected human individual. J Virol 71: 4821-4824.
45. Calattini S, Betsem EB, Froment A, Mauclere P, Tortevoye P, et al. (2007) Simian foamy virus transmission from apes to humans, rural Cameroon. Emerg Infect Dis 13: 1314-1320.
46. Heneine W, Switzer WM, Sandstrom P, Brown J, Vedapuri S, et al. (1998) Identification of a human population infected with simian foamy viruses. Nat Med 4: 403-407.
47. Jones-Engel L, May CC, Engel GA, Steinkraus KA, Schillaci MA, et al. (2008) Diverse contexts of zoonotic transmission of simian foamy viruses in Asia. Emerg Infect Dis 14: 1200-1208.