Mitochondrial divergence between 2 populations of the hooded capuchin, cebus (sapajus) cay (platyrrhini, primates)

Journal of Heredity

Volumn 101, Issue 3, 2010, Pages 261-269

  Casado, Flavia ^a,c   Bonvicino, Cibele R ^b,c   Nagle, Carlos ^d   Comas, Belén ^d   Manzur, Teresita D ^d   Lahoz, Mónica M ^d   Seuánez, Héctor N ^a,b  

^a FEDERAL UNIVERSITY OF RIO DE JANEIRO   (Brazil)

^b INSTITUTO NACIONAL DE CÂNCER   (Brazil)

^c INSTITUTO OSWALDO CRUZ   (Brazil)

^d Universidad Nacional de Río Cuarto Consejo Nacional de Investigaciones Científicas y Técnicas   (Argentina)

Author keywords

Cebus cay; Cytochrome b; Mitochondrial DNA

Indexed keywords

CYTOCHROME B; MITOCHONDRIAL DNA;

ARTICLE; CODON; DEMOGRAPHY; GENETIC DISTANCE; GENETIC VARIABILITY; GLACIATION; HAPLOTYPE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PLATYRRHINI; PRIMATE; PRIORITY JOURNAL; SAPAJUS;

ANIMALS; BRAZIL; CEBUS; CYTOCHROMES B; DNA, MITOCHONDRIAL; EVOLUTION, MOLECULAR; FEMALE; GENETIC SPECIATION; HAPLOTYPES; PARAGUAY; PHYLOGENY;

CEBUS; CEBUS APELLA; CEBUS APELLA PARAGUAYANUS; PLATYRRHINI; PRIMATES;

EID: 77951674748     PISSN: 00221503     EISSN: 14657333     Source Type: Journal    
DOI: 10.1093/jhered/esp119     Document Type: Article

References (52)

1. Avise JC, Arnold J, Ball RM, Bermingham E, Lamb T, Neigel JE, Reed CA, Saunders NC. 1987. Intraspecific phylogeography: the mitochondrial DNA bridge between population genetics and systematic. Ann Rev Ecol Syst. 18:489-522.
2. Bandelt HJ, Forster P, Röhl A. 1999. Median-joining networks for inferring phylogenies. Mol Biol Evol. 16(15):37-48.
3. Bensasson D, Zhang DX, Hartl DL, Hewitt GM. 2001. Mitochondrial pseudogenes: evolution's misplaced witnesses. Trends Ecol Evol. 16:314-321.
4. Bigarella JJ, Andrade-Lima D. 1982. Paleoenvironmental changes in Brazil. In: Prance GT, editor. Biological diversification in the tropics. New York: Columbia University Press. p. 27-40.
5. Bonvicino CR, Lemos B, Seuánez HN. 2001. Molecular phylogenetics of howler monkeys (Alouatta, Platyrrhini). A comparison with karyotypic data. Chromosoma. 110:241-246.
6. Bonvicino CR, Penna-Firme V, do Nascimento FF, Lemos B, Stanyon R, Seuánez HN. 2003. The lowest diploid number (2n 5 16) yet found in any primates: Callicebus lugens (Humboldt, 1881). Folia Primatol. 74:141-149.
7. Bradbury JP, Leyden B, Salgado-Labouriau M, Lewis WM Jr., Schubert C, Binford MW, Frey DG, Whitehead DR, Weibezahn FH. 1981. Late quaternary environmental history of lake Valencia, Venezuela. Science. 24:1299-1305.
8. Cabrera A. 1917. Notas sobre el género "Cebus". Rev R Acad Cienc Exactas Fís Nat Mat. 16(15):221-244.
9. Casado F, Bonvicino CR, Seuánez HN. 2007. Phylogeographic analysis of Callicebus lugens (Platyrrhini, Primates). J Hered. 98(1):88-92.
10. Crandall KA, Templeton AR. 1993. Empirical test of some predictions from coalescent theory with applications to intraspecific phylogeny reconstruction. Genetics. 134:959-969.
11. Cropp SJ, Larson A, Cheverud JM. 1999. Historical biogeography of tamarins, genus Saguinus: the molecular phylogenetic evidence. Am J Phys Anthropol. 108:65-89.
12. Drummond AJ, Ho SYW, Rawlence N, Rambaut A. 2006. A rough guide to BEAST1.4. Available from: http://besast-mcmc.google.com/files/BEAST14- Manual-6July2007.pdf
13. Excoffier L, Smouse P, Quattro J. 1992. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics. 131:479-491.
14. Excoffier LGL, Schneider S. 2005. Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evol Bioinform Online. 1:47-50.
15. Felsenstein J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution. 39:783-791.
16. Fu YX. 1997. Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics. 147:915-925.
17. Gonzalez-Ittig RE, Patton JL, Gardenal CN. 2007. Analysis of cytochrome-b nucleotide diversity confirms recent range expansion in Calomys musculinus (Rodentia, Muridae). J Mammal. 88(3):777-783.
18. Goodman M, Porter CA, Czelusniak J, Page SL, Schneider H, Shoshani J, Gunnell G, Groves CL. 1998. Toward a phylogenetic classification of primates based on DNA evidence complemented by fossil evidence. Mol Phylogenet Evol. 9(3):585-598.
19. Hall TA. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser. 41:95-98.
20. Hare FK. 1992. Climate and weather: climate change. In: McHenry R, editor. The new encyclopaedia Britannica. Vol.16. 15th ed. Chicago: Encyclopaedia Britannica, Inc. p. 484-497
21. Hershkovitz P. 1949. Mammals of Northern Colombia. Preliminary report no. 4: monkeys (Primates) with taxonomic revisions of some forms. Proc U S Natl Mus. 98(3232):323-427.
22. HGNC. 2008. HGNC Database, HUGO Gene Nomenclature Committee (HGNC). [Internet]. Cambridge (UK): European Bioinformatics Institute. Available from http://www.genenames.org/cgi-bin/hgnc-search.pl.
23. Hill WCH. 1960. Primates: comparative, anatomy and taxonomy. Volume IV. Cebidae. Part A. Edinburgh (UK): The University Press.
24. Institute of Laboratory Animal Resources. 1996. Guide for the care and use of laboratory animals. Washington (DC): National Academy of Science.
25. Irwin DM, Kocher TD, Wilson AC. 1991. Evolution of the cytochrome b gene of mammals. J Mol Evol. 32:128-144.
26. Joly CA, Aidar MPM, Klink CA, McGrath DG, Moreira AG, Moutinho P, Nepstad DC, Oliveira AA, Pott A, Rodal MJN, et al. 1999. Evolution of the Brazilian phylogeography classification systems: implications for biodiversity conservation. Cienc Cult J Braz Assoc Adv Sci. 51: 331-348.
27. Matayoshi T, Howlin E, Nasazzi N, Nagle C, Gadow E, Seuánez HN. 1986. Chromosome studies of Cebus apella: the standard karyotype of Cebus apella paraguayanus, Fischer, 1829. Am J Primatol. 10:185-193.
28. McCarthy C. 1996-1998. Chromas. Version 1.45 (32-bits). [Internet]. Nathan, Queensland: School of Health Science, Griffith University. Available from:http://technelysium.com.au/chromas.html.
29. Mudry MD, Nieves M, Bolzán AD. 2007. Chromosomal localization of the telometric (TTAGGG)n sequence in eight species of New World Primates (Neotropical Primates, Platyrrhini). Cytogenet Genome Res. 119(3-4): 221-224.
30. Nascimento FF, Bonvicino CR, da Silva FCD, Schneider MPC, Seuánez HN. 2005. Cytochrome b polymorphisms and population structure two species of Allouatta (Primates). Cytogenet Genome Res. 108: 106-111.
31. Nascimento FF, Bonvicino CR, Seuánez HN. 2007. Population genetic studies of Alouatta caraya (Alouattinae, Primates): inferences on geographic distribution and ecology. Am J Primatol. 69:1-12.
32. Nascimento FF, Bonvicino CR, de Oliveira MM, Schneider MPC, Seuánez HN. 2008. Population genetic studies of Alouatta belzebul from the Amazonian and Atlantic Forests. Am J Primatol. 70:423-431.
33. Nei M, Kumar S. 2000. Molecular evolution and phylogenetics. Oxford: University Press.
34. Nixon KC. 1999. The parsimony ratchet, a new method for rapid parsimony analysis. Cladistics. 15(4):407-414.
35. de Oliveira PE, Barreto AMF, Suguio K. 1999. Late Pleistocene/Holocene climatic and vegetational history of the Brazilian Caatinga: the fóssil dunes of the middle São Francisco river. Palaeogeogr palaeoclimatol palaeoecol. 152:319-337.
36. Oliveira MM, Langguth A. 2006. Rediscovery of Marcgrave's capuchin monkey and designation of a neotype for Simia flavia Schreber, 1774 (Primates, Cebidae). Bol Mus Nac. 523:1-16.
37. Opazo JC, Wildman DE, Prychitko T, Johnson RM, Goodman M. 2006. Phylogenetic relationships and divergence times among new world monkeys (Platyrrhini, Primates). Mol Phylogenet Evol. 40:274-280.
38. Posada D, Crandall KA. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics. 14(9):817-818.
39. Sampaio MIC, Barroso CML, da Silva BTF. 1991. Genetic variability in Cebus apella paraguayanus: biochemical analysis of seven loci and variation in glyoxalase I (E.C.4.4.1.5). Primates. 32(1):105-109.
40. Schneider H, Sampaio MIC, Barroso CML, Silva BTF, Warzbort R, Matayoshi T, Howlin E, Nassazi N, Nagle C, Seuánez H. 1988. Genetic variability in a natural population of Cebus apella paraguayanus (Cebidae, Primates). Rev Bras Genet. 11:89-96.
41. Schneider H, Excoffier L. 1999. Estimation of demographic parameter from the distribution of pairwise differences when the mutation rates vary among sites: application to human mitochondrial DNA. Genetics. 152:1079-1089.
42. Schneider H, Canavez FC, Sampaio I, Moreira MA, Tagliaro CH, Seuánez HN. 2001. Can molecular data place each neotropical monkey in its own branch? Chromosoma. 109:515-523.
43. Silva JS Jr. 2001. Especiacxão em macacos-prego e caiararas, gênero Cebus Erxleben, 1777 (Primates, Cebidae). Rio de Janeiro (Brazil): Universidade Federal do Rio de Janeiro. p. 377.
44. Silva JS Jr. 2002. Taxonomy of capuchin monkey, Cebus Erxleben, 1777. Neotrop Primates. 10(1):29.
45. Smith LJ, Braylan RC, Nutkis JE, Edmundson KB, Downing JR, Wakeland EK. 1987. Extraction of DNA from human cells and tissues fixed in ethanol. Anal Biochem. 160:135-138.
46. Sorenson MD, Quinn TW. 1998. Numts: a challenge for avian systematic and population biology. Auk. 115:214-221.
47. Swofford DL. 2003. PAUP*: phylogenetic analysis using parsimony (*and other methods), version 4.0b10. Sunderland (MA): Sinauer Associates.
48. Tamura K, Dudley J, Nei M, Kumar S. 2007. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol. 24:1596-1599.
49. Vallinoto M, Araripe J, Rego PS, Tagliaro CH, Sampaio I, Schneider H. 2006. Tocantins river as an effective barrier to gene flow in Saguinus niger populations. Genet Mol Biol. 29(2):215-219.
50. Vivo M de, Carmignotto AP. 2004. Holocene vegetation change and the mammal faunas of South America and Africa. J Biogeogr. 31:943-957.
51. Vos RA. 2003. Accelerated likelihood surface exploration: the "Likelihood Ratchet". Syst Biol. 52:368-373.
52. Zhang CX, Hewitt GM. 1996. Nuclear integrations: challenges for mitochondrial DNA markers. Trends Ecol Evol. 11:247-251.