메뉴 건너뛰기




Volumn 77, Issue 21, 2011, Pages 7647-7655

Geographical location determines the population structure in phyllosphere microbial communities of a salt-excreting desert tree

Author keywords

[No Author keywords available]

Indexed keywords

ARCHAEAL; CLIMATIC REGIONS; DEAD SEA; DIVERSE COMMUNITY; ECOLOGICAL CHARACTERISTICS; GEOGRAPHIC LOCATION; GEOGRAPHICAL LOCATIONS; HALOMONAS; LEAF SURFACES; MEDITERRANEAN REGION; MICROBIAL COMMUNITIES; MICROBIAL COMMUNITY STRUCTURES; PHYLLOSPHERES; POPULATION STRUCTURES; STRESS CONDITION; TREE LEAVES; TREE SPECIES;

EID: 83155163706     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.05565-11     Document Type: Article
Times cited : (157)

References (41)
  • 1
    • 68149178616 scopus 로고    scopus 로고
    • A method for studying protistan diversity using massively parallel sequencing of V9 hypervariable regions of small-subunit ribosomal RNA genes
    • Amaral-Zettler, L. A., E. A. McCliment, H. W. Ducklow, and S. M. Huse. 2009. A method for studying protistan diversity using massively parallel sequencing of V9 hypervariable regions of small-subunit ribosomal RNA genes. PLoS One 4:e6372.
    • (2009) PLoS One , vol.4
    • Amaral-Zettler, L.A.1    McCliment, E.A.2    Ducklow, H.W.3    Huse, S.M.4
  • 2
    • 0033746313 scopus 로고    scopus 로고
    • The ecology and biogeography of microorganisms of plant surfaces
    • Andrews, J. H., and R. F. Harris. 2000. The ecology and biogeography of microorganisms of plant surfaces. Annu. Rev. Phytopathol. 38:145-180.
    • (2000) Annu. Rev. Phytopathol. , vol.38 , pp. 145-180
    • Andrews, J.H.1    Harris, R.F.2
  • 5
    • 77149143533 scopus 로고    scopus 로고
    • Comparative community genomics in the Dead Sea: an increasingly extreme environment
    • Bodaker, I., et al. 2010. Comparative community genomics in the Dead Sea: an increasingly extreme environment. ISME J. 4:399-407.
    • (2010) ISME J , vol.4 , pp. 399-407
    • Bodaker, I.1
  • 6
    • 0000286531 scopus 로고
    • An ordination of the upland forest communities of souther Wisconsin
    • Bray, J. R., and J. T. Curtis. 1957. An ordination of the upland forest communities of souther Wisconsin. Ecol. Monogr. 27:325-349.
    • (1957) Ecol. Monogr. , vol.27 , pp. 325-349
    • Bray, J.R.1    Curtis, J.T.2
  • 7
    • 84945495487 scopus 로고
    • Estimating the number of classes via sample coverage
    • Chao, A., and S. M. Lee. 1992. Estimating the number of classes via sample coverage. J. Am. Stat. Assoc. 87:210-217.
    • (1992) J. Am. Stat. Assoc. , vol.87 , pp. 210-217
    • Chao, A.1    Lee, S.M.2
  • 8
    • 70349481520 scopus 로고    scopus 로고
    • Community proteogenomics reveals insights into the physiology of phyllosphere bacteria
    • Delmotte, N., et al. 2009. Community proteogenomics reveals insights into the physiology of phyllosphere bacteria. Proc. Natl. Acad. Sci. U. S. A. 106:16428-16433.
    • (2009) Proc. Natl. Acad. Sci. U. S. A. , vol.106 , pp. 16428-16433
    • Delmotte, N.1
  • 9
    • 56849106496 scopus 로고    scopus 로고
    • The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA Sequencing
    • Dethlefsen, L., S. Huse, M. L. Sogin, and D. A. Relman. 2008. The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA Sequencing. PLoS Biol. 6:e280.
    • (2008) PLoS Biol , vol.6
    • Dethlefsen, L.1    Huse, S.2    Sogin, M.L.3    Relman, D.A.4
  • 10
    • 77951498638 scopus 로고    scopus 로고
    • Experimental factors affecting PCR-based estimates of microbial species richness and evenness
    • Engelbrektson, A., et al. 2010. Experimental factors affecting PCR-based estimates of microbial species richness and evenness. ISME J. 4:642-647.
    • (2010) ISME J , vol.4 , pp. 642-647
    • Engelbrektson, A.1
  • 11
    • 33747174849 scopus 로고    scopus 로고
    • Spatial scaling of microbial biodiversity
    • Green, J., and B. J. M. Bohannan. 2006. Spatial scaling of microbial biodiversity. Trends Ecol. Evol. 21:501-507.
    • (2006) Trends Ecol. Evol. , vol.21 , pp. 501-507
    • Green, J.1    Bohannan, B.J.M.2
  • 12
    • 0001427876 scopus 로고
    • Measurement of "overlap" in comparative ecological studies
    • Horn, H. S. 1977. Measurement of "overlap" in comparative ecological studies. Am. Nat. 914:419-423.
    • (1977) Am. Nat. , vol.914 , pp. 419-423
    • Horn, H.S.1
  • 13
    • 34948842866 scopus 로고    scopus 로고
    • Accuracy and quality of massively parallel DNA pyrosequencing
    • Huse, S. M., J. A. Huber, H. G. Morrison, M. L. Sogin, and D. Mark Welch. 2007. Accuracy and quality of massively parallel DNA pyrosequencing. Genome Biol. 8:R143. http://genomebiology.com/content/8/7/R143.
    • (2007) Genome Biol , vol.8
    • Huse, S.M.1    Huber, J.A.2    Morrison, H.G.3    Sogin, M.L.4    Mark Welch, D.5
  • 14
    • 57149093416 scopus 로고    scopus 로고
    • Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing
    • Huse, S. M., et al. 2008. Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing. PLoS Genet. 4:e1000255.
    • (2008) PLoS Genet , vol.4
    • Huse, S.M.1
  • 15
    • 77955251092 scopus 로고    scopus 로고
    • Ironing out the wrinkles in the rare biosphere through improved OTU clustering
    • Huse, S. M., D. M. Welch, H. G. Morrison, and M. L. Sogin. 2010. Ironing out the wrinkles in the rare biosphere through improved OTU clustering. Environ. Microbiol. 12:1889-1898.
    • (2010) Environ. Microbiol. , vol.12 , pp. 1889-1898
    • Huse, S.M.1    Welch, D.M.2    Morrison, H.G.3    Sogin, M.L.4
  • 16
    • 33750085865 scopus 로고    scopus 로고
    • Changes in the phyllosphere community of the resurrection fern, Polypodium polypodioides, associated with rainfall and wetting
    • Jackson, E. F., H. L. Echlin, and C. R. Jackson. 2006. Changes in the phyllosphere community of the resurrection fern, Polypodium polypodioides, associated with rainfall and wetting. FEMS Microbiol. Ecol. 58:236-246.
    • (2006) FEMS Microbiol. Ecol. , vol.58 , pp. 236-246
    • Jackson, E.F.1    Echlin, H.L.2    Jackson, C.R.3
  • 17
    • 0028857360 scopus 로고
    • Effect of sampling scale on the assessment of epiphytic bacterial populations
    • Kinkel, L. L., M. Wilson, and S. E. Lindow. 1995. Effect of sampling scale on the assessment of epiphytic bacterial populations. Microb. Ecol. 29:283-297.
    • (1995) Microb. Ecol. , vol.29 , pp. 283-297
    • Kinkel, L.L.1    Wilson, M.2    Lindow, S.E.3
  • 18
    • 77952672792 scopus 로고    scopus 로고
    • Site and plant species are important determinants of the Methylobacterium community composition in the plant phyllosphere
    • Knief, C., A. Ramette, L. Frances, C. Alonso-Blanco, and J. A. Vorholt. 2010. Site and plant species are important determinants of the Methylobacterium community composition in the plant phyllosphere. ISME J. 4:719-728.
    • (2010) ISME J , vol.4 , pp. 719-728
    • Knief, C.1    Ramette, A.2    Frances, L.3    Alonso-Blanco, C.4    Vorholt, J.A.5
  • 19
    • 0033533302 scopus 로고    scopus 로고
    • Mapping of temperature variables in Israel: a comparison of different interpolation methods
    • Kurtzman, D., and R. Kadmon. 1999. Mapping of temperature variables in Israel: a comparison of different interpolation methods. Climate Res. 13:33-43.
    • (1999) Climate Res , vol.13 , pp. 33-43
    • Kurtzman, D.1    Kadmon, R.2
  • 21
    • 0004170691 scopus 로고    scopus 로고
    • 2nd Engl. ed. Elsevier, Amsterdam, the Netherlands
    • Legendre, P., and L. Legendre. 1998. Numerical ecology, 2nd Engl. ed. Elsevier, Amsterdam, the Netherlands.
    • (1998) Numerical ecology
    • Legendre, P.1    Legendre, L.2
  • 23
    • 84944814101 scopus 로고
    • Determination of chlorophyll and pheo-pigments: spectrophotometric equations
    • Lorenzen, C. J. 1967. Determination of chlorophyll and pheo-pigments: spectrophotometric equations. Limnol. Oceanogr. 12:343-346.
    • (1967) Limnol. Oceanogr. , vol.12 , pp. 343-346
    • Lorenzen, C.J.1
  • 24
    • 31544448331 scopus 로고    scopus 로고
    • Microbial biogeography: putting microorganisms on the map
    • Martiny, J. B. H., et al. 2006. Microbial biogeography: putting microorganisms on the map. Nat. Rev. Microbiol. 4:102-112.
    • (2006) Nat. Rev. Microbiol. , vol.4 , pp. 102-112
    • Martiny, J.B.H.1
  • 25
    • 0036798823 scopus 로고    scopus 로고
    • A detailed phenotypic characterisation of the type strains of Halomonas species
    • Mata, J. A., Martinez-Canovas, J. E. Quesada, and V. Béjar. 2002. A detailed phenotypic characterisation of the type strains of Halomonas species. Syst. Appl. Microbiol. 25:360-375.
    • (2002) Syst. Appl. Microbiol. , vol.25 , pp. 360-375
    • Mata, J.1    Martinez-Canovas, A.2    Quesada, J.E.3    Béjar, V.4
  • 26
    • 0033986064 scopus 로고    scopus 로고
    • Role of leaf surface sugars in colonization of plants by bacterial epiphytes
    • Mercier, J., and S. E. Lindow. 2000. Role of leaf surface sugars in colonization of plants by bacterial epiphytes. Appl. Environ. Microbiol. 66:369-374.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 369-374
    • Mercier, J.1    Lindow, S.E.2
  • 27
    • 0023501643 scopus 로고
    • An evaluation of relative robustness of techniques for ecological ordinations
    • Minchin, P. R. 1987. An evaluation of relative robustness of techniques for ecological ordinations. Vegetatio 71:145-156.
    • (1987) Vegetatio , vol.71 , pp. 145-156
    • Minchin, P.R.1
  • 28
    • 68649113028 scopus 로고    scopus 로고
    • R Foundation for Statistical Computing, Vienna, Austria
    • Oksanen, J., et al. 2008. Vegan: community ecology package. R package version 1.15-1. R Foundation for Statistical Computing, Vienna, Austria. http://vegan.r-forge.r-project.org/.
    • (2008) Vegan: community ecology package. R package version , vol.1 , pp. 15-21
    • Oksanen, J.1
  • 29
    • 34247221045 scopus 로고    scopus 로고
    • The role of ecological theory in microbial ecology
    • Prosser, J. I., et al. 2007. The role of ecological theory in microbial ecology. Nat. Rev. Microbiol. 5:384-392.
    • (2007) Nat. Rev. Microbiol. , vol.5 , pp. 384-392
    • Prosser, J.I.1
  • 30
    • 45149091662 scopus 로고    scopus 로고
    • Drop-size soda lakes: transient microbial habitats on a salt-secreting desert tree
    • Qvit-Raz, N., E. Jurkevitch, and S. Belkin. 2008. Drop-size soda lakes: transient microbial habitats on a salt-secreting desert tree. Genetics 178: 1615-1622.
    • (2008) Genetics , vol.178 , pp. 1615-1622
    • Qvit-Raz, N.1    Jurkevitch, E.2    Belkin, S.3
  • 31
    • 67649223259 scopus 로고    scopus 로고
    • Bacterial succession on the leaf surface: a novel system for studying successional dynamics
    • Redford, A. J., and N. Fierer. 2009. Bacterial succession on the leaf surface: a novel system for studying successional dynamics. Microb. Ecol. 58:189-198.
    • (2009) Microb. Ecol. , vol.58 , pp. 189-198
    • Redford, A.J.1    Fierer, N.2
  • 32
    • 77957885485 scopus 로고    scopus 로고
    • The ecology of the phyllosphere: geographic and phylogenetic variability in the distribution of bacteria on tree leaves
    • Redford, A. J., R. M. Bowers, R. Knight, Y. Linhart, and N. Fierer. 2010. The ecology of the phyllosphere: geographic and phylogenetic variability in the distribution of bacteria on tree leaves. Environ. Microbiol. 12:2885-2893.
    • (2010) Environ. Microbiol. , vol.12 , pp. 2885-2893
    • Redford, A.J.1    Bowers, R.M.2    Knight, R.3    Linhart, Y.4    Fierer, N.5
  • 33
    • 46149118693 scopus 로고    scopus 로고
    • Composition of the phyllospheric microbial populations on vegetable plants with different glucosinolate and carotenoid compositions
    • Ruppel, S., A. Krumbein, and M. Schreiner. 2008. Composition of the phyllospheric microbial populations on vegetable plants with different glucosinolate and carotenoid compositions. Microb. Ecol. 56:364-372.
    • (2008) Microb. Ecol. , vol.56 , pp. 364-372
    • Ruppel, S.1    Krumbein, A.2    Schreiner, M.3
  • 34
    • 72949107142 scopus 로고    scopus 로고
    • Introducing mothur: open source, platformindependent, community-supported software for describing and comparing microbial communities
    • Schloss, P. D., et al. 2009. Introducing mothur: open source, platformindependent, community-supported software for describing and comparing microbial communities. Appl. Environ. Microbiol. 75:7537-7541.
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 7537-7541
    • Schloss, P.D.1
  • 35
    • 33747073504 scopus 로고    scopus 로고
    • Microbial diversity in the deep sea and the underexplored "rare biosphere
    • Sogin, M. L., et al. 2006. Microbial diversity in the deep sea and the underexplored "rare biosphere." Proc. Natl. Acad. Sci. U. S. A. 103:12115-12120.
    • (2006) Proc. Natl. Acad. Sci. U. S. A. , vol.103 , pp. 12115-12120
    • Sogin, M.L.1
  • 36
    • 0011140335 scopus 로고
    • Ecological studies on Tamarix aphylla
    • Waisel, Y. 1961. Ecological studies on Tamarix aphylla. L. Karst. Plant Soil 13:356-364.
    • (1961) L. Karst. Plant Soil , vol.13 , pp. 356-364
    • Waisel, Y.1
  • 37
    • 0037528223 scopus 로고
    • The glands of Tamarix aphylla: a system for salt secretion or for carbon concentration? Physiol
    • Waisel, Y. 1991. The glands of Tamarix aphylla: a system for salt secretion or for carbon concentration? Physiol. Plant. 83:506-510.
    • (1991) Plant , vol.83 , pp. 506-510
    • Waisel, Y.1
  • 38
    • 56649114468 scopus 로고    scopus 로고
    • Phyllosphere microbiology with special reference to diversity and plant genotype
    • Whipps, J. M., P. Hand, D. Pink, and G. D. Bending. 2008. Phyllosphere microbiology with special reference to diversity and plant genotype. J. Appl. Microbiol. 105:1744-1755.
    • (2008) J. Appl. Microbiol. , vol.105 , pp. 1744-1755
    • Whipps, J.M.1    Hand, P.2    Pink, D.3    Bending, G.D.4
  • 39
    • 57349102512 scopus 로고    scopus 로고
    • Abundance and diversity of the phyllosphere bacterial communities of Mediterranean perennial plants that differ in leaf chemistry
    • Yadav, R. K. P., E. M. Papatheodorou, K. Karamanoli, H. I. A. Constantinidou, and D. Vokou. 2008. Abundance and diversity of the phyllosphere bacterial communities of Mediterranean perennial plants that differ in leaf chemistry. Chemoecology 18:217-226.
    • (2008) Chemoecology , vol.18 , pp. 217-226
    • Yadav, R.K.P.1    Papatheodorou, E.M.2    Karamanoli, K.3    Constantinidou, H.I.A.4    Vokou, D.5
  • 40
    • 0035957371 scopus 로고    scopus 로고
    • Microbial phyllosphere populations are more complex than previously realized
    • Yang, C. H., D. E. Crowley, J. Borneman, and N. T. Keen. 2001. Microbial phyllosphere populations are more complex than previously realized. Proc. Natl. Acad. Sci. U. S. A. 98:3889-3894.
    • (2001) Proc. Natl. Acad. Sci. U. S. A. , vol.98 , pp. 3889-3894
    • Yang, C.H.1    Crowley, D.E.2    Borneman, J.3    Keen, N.T.4
  • 41
    • 27744480824 scopus 로고    scopus 로고
    • A similarity measure based on species proportions
    • Yue, J. C., and M. K. Clayton. 2005. A similarity measure based on species proportions. Commun. Stat. Theor. Methods 34:2123-2132.
    • (2005) Commun. Stat. Theor. Methods , vol.34 , pp. 2123-2132
    • Yue, J.C.1    Clayton, M.K.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.