Comparison of commercially available target enrichment methods for next-generation sequencing

Journal of Biomolecular Techniques

Volumn 24, Issue 2, 2013, Pages 73-86

  Bodi, Kip ^a   Perera, A G ^b   Adams, P S ^c   Bintzler, D ^d   Dewar, K ^e   Grove, D S ^f   Kieleczawa, J ^g   Lyons, R H ^h   Neubert, T A ⁱ   Noll, A C ^b   Singh, S ^j   Steen, R ^k   Zianni, M ^l  

^a TUFTS UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b STOWERS INSTITUTE FOR MEDICAL RESEARCH   (United States)

^c TRUDEAU INSTITUTE   (United States)

^d DNA Analysis   (United States)

^e MCGILL UNIVERSITY   (Canada)

^f PENNSYLVANIA STATE UNIVERSITY   (United States)

^g Wyzer Biosciences   (United States)

^h UNIVERSITY OF MICHIGAN   (United States)

ⁱ NEW YORK UNIVERSITY SCHOOL OF MEDICINE   (United States)

^j UNIVERSITY OF MINNESOTA   (United States)

^k HARVARD MEDICAL SCHOOL   (United States)

^l OHIO STATE UNIVERSITY   (United States)

more..

Author keywords

Agilent; Illumina; NimbleGen; Targeted capture

Indexed keywords

ARTICLE; GENE LOCUS; GENE SEQUENCE; MICROARRAY ANALYSIS; POLYMERASE CHAIN REACTION; REPRODUCIBILITY; SENSITIVITY AND SPECIFICITY; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; SINGLE NUCLEOTIDE POLYMORPHISM;

AGILENT; ILLUMINA; NIMBLEGEN; TARGETED CAPTURE;

CHROMOSOMES; DNA; GENOME, HUMAN; GENOTYPE; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; HUMANS; POLYMORPHISM, SINGLE NUCLEOTIDE;

EID: 84879634155     PISSN: 15240215     EISSN: 19434731     Source Type: Journal    
DOI: 10.7171/jbt.13-2402-002     Document Type: Article

References (8)

1. Metzker ML. Sequencing technologies-the next generation. Nat Rev Genet 2010;11:31-46.
2. Hopp K, Heyer CM, Hommerding CJ, et al. B9D1 is revealed as a novel Meckel syndrome (MKS) gene by targeted exon enriched next-generation sequencing and deletion analysis. Hum Mol Genet 2011;20:2524-2534.
3. Tan IB, Cutcutache I, Zang ZJ, et al. Fanconi's anemia in adulthood: chemoradiation-induced bone marrow failure and a novel FANCA mutation identified by targeted deep sequencing. J Clin Oncol 2011;29:e591-e594.
4. Mamanova L, Coffey AJ, Scott CE, et al. Target-enrichment strategies for next-generation sequencing. Nat Methods 2010;7: 111-118.
5. Langmead B, Trapnell C, Pop M, Salzberg SL. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 2009;10:R25.
6. Li H, Handsaker B, Wysoker A, et al. The sequence alignment/map format and SAMtools. Bioinformatics 2009;25:2078-2079.
7. Smigielski EM, Sirotkin K, Ward M, Sherry ST. dbSNP: a database of single nucleotide polymorphisms. Nucleic Acids Res 2000;28:352-355.
8. Quail MA, Kozarewa I, Smith F, et al. A large genome center's improvements to the Illumina sequencing system. Nat Methods 2008;5:1005-1010.