Contribution of nucleosome binding preferences and co-occurring DNA sequences to transcription factor binding

BMC Genomics

Volumn 14, Issue 1, 2013, Pages

  He, Ximiao ^a   Chatterjee, Raghunath ^a   John, Sam ^a,c   Bravo, Hector ^b   Sathyanarayana, B K ^a   Biddie, Simon C ^a   FitzGerald, Peter C ^a   Stamatoyannopoulos, John A ^c   Hager, Gordon L ^a   Vinson, Charles ^a  

^a NATIONAL CANCER INSTITUTE   (United States)

^b Bldg 142   (United States)

^c UNIVERSITY OF WASHINGTON   (United States)

Author keywords

C Jun; GR; Nucleosome; TFBS

Indexed keywords

DNA; GLUCOCORTICOID RECEPTOR; PROTEIN C JUN; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR AP 1; TRANSCRIPTION FACTOR HOXA2; TRANSCRIPTION FACTOR PBX1; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; ANIMAL CELL; ARTICLE; BINDING COMPETITION; BINDING SITE; CHROMATIN IMMUNOPRECIPITATION; CONTROLLED STUDY; DNA SEQUENCE; IN VIVO STUDY; MOUSE; NONHUMAN; NUCLEOSOME; PROTEIN BINDING; PROTEIN MOTIF; QUANTITATIVE ANALYSIS; RECEPTOR BINDING;

ANIMALS; BASE SEQUENCE; CELL LINE; CHROMATIN; CHROMATIN ASSEMBLY AND DISASSEMBLY; DNA; LOGISTIC MODELS; MICE; MODELS, MOLECULAR; NUCLEIC ACID CONFORMATION; NUCLEOSOMES; NUCLEOTIDE MOTIFS; PROTEIN BINDING; PROTEIN CONFORMATION; SUBSTRATE SPECIFICITY; TRANSCRIPTION FACTORS;

VERTEBRATA;

EID: 84879437857     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-14-428     Document Type: Article

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