-
1
-
-
77954748234
-
The UNITE database for molecular identification of fungi-recent updates and future perspectives
-
Abarenkov K., Nilsson R.H., Larsson K.-H., Alexander I.J., Eberhardt U., Erland S., Høiland K., Kjøller R., Larsson E., Pennanen T., Sen R., Taylor A.F.S., Tedersoo L., Ursing B.M., Vrålstad T., Liimatainen K., Peintner U., Kõljalg U. The UNITE database for molecular identification of fungi-recent updates and future perspectives. New Phytologist 2010, 186:281-285.
-
(2010)
New Phytologist
, vol.186
, pp. 281-285
-
-
Abarenkov, K.1
Nilsson, R.H.2
Larsson, K.-H.3
Alexander, I.J.4
Eberhardt, U.5
Erland, S.6
Høiland, K.7
Kjøller, R.8
Larsson, E.9
Pennanen, T.10
Sen, R.11
Taylor, A.F.S.12
Tedersoo, L.13
Ursing, B.M.14
Vrålstad, T.15
Liimatainen, K.16
Peintner, U.17
Kõljalg, U.18
-
2
-
-
84855949949
-
Using network analysis to explore co-occurrence patterns in soil microbial communities
-
Barberan A., Bates S.T., Casamayor E.O., Fierer N. Using network analysis to explore co-occurrence patterns in soil microbial communities. ISME Journal 2012, 6:343-351.
-
(2012)
ISME Journal
, vol.6
, pp. 343-351
-
-
Barberan, A.1
Bates, S.T.2
Casamayor, E.O.3
Fierer, N.4
-
3
-
-
77954336858
-
ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases
-
Bellemain E., Carlsen T., Brochmann C., Coissac E., Taberlet P., Kauserud H. ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases. BMC Microbiology 2010, 10:189.
-
(2010)
BMC Microbiology
, vol.10
, pp. 189
-
-
Bellemain, E.1
Carlsen, T.2
Brochmann, C.3
Coissac, E.4
Taberlet, P.5
Kauserud, H.6
-
4
-
-
52749089913
-
Network analysis tools: from biological networks to clusters and pathways
-
Brohée S., Faust K., Lima-Mendez G., Vanderstocken G., van Helden J. Network analysis tools: from biological networks to clusters and pathways. Nature Protocols 2008, 3:1616-1629.
-
(2008)
Nature Protocols
, vol.3
, pp. 1616-1629
-
-
Brohée, S.1
Faust, K.2
Lima-Mendez, G.3
Vanderstocken, G.4
van Helden, J.5
-
5
-
-
33748557777
-
The statistical mechanics of complex signaling networks: nerve growth factor signaling
-
Brown K.S., Hill C.C., Calero G.A., Myers C.R., Lee K.H., Sethna J.P., Cerione R.A. The statistical mechanics of complex signaling networks: nerve growth factor signaling. Physical Biology 2004, 1:184-195.
-
(2004)
Physical Biology
, vol.1
, pp. 184-195
-
-
Brown, K.S.1
Hill, C.C.2
Calero, G.A.3
Myers, C.R.4
Lee, K.H.5
Sethna, J.P.6
Cerione, R.A.7
-
6
-
-
70349482733
-
454 pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity
-
Buée M., Reich M., Murat C., Morin E., Nilsson R.H., Uroz S., Martin F. 454 pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity. New Phytologist 2009, 184:449-456.
-
(2009)
New Phytologist
, vol.184
, pp. 449-456
-
-
Buée, M.1
Reich, M.2
Murat, C.3
Morin, E.4
Nilsson, R.H.5
Uroz, S.6
Martin, F.7
-
7
-
-
77954238817
-
Aglobal network of coexisting microbes from environmental and whole-genome sequence data
-
Chaffron S., Rehrauer H., Pernthaler J., von Mering C. Aglobal network of coexisting microbes from environmental and whole-genome sequence data. Genome Research 2010, 20:947-959.
-
(2010)
Genome Research
, vol.20
, pp. 947-959
-
-
Chaffron, S.1
Rehrauer, H.2
Pernthaler, J.3
von Mering, C.4
-
9
-
-
84861557467
-
Molecular ecological network analyses
-
Deng Y., Jiang Y.H., Yang Y., He Z., Luo F., Zhou J. Molecular ecological network analyses. BMC Bioinformatics 2012, 13:113.
-
(2012)
BMC Bioinformatics
, vol.13
, pp. 113
-
-
Deng, Y.1
Jiang, Y.H.2
Yang, Y.3
He, Z.4
Luo, F.5
Zhou, J.6
-
11
-
-
84863920287
-
Microbial interactions: from networks to models
-
Faust K., Raes J. Microbial interactions: from networks to models. Nature Reviews Microbiology 2012, 10:538-550.
-
(2012)
Nature Reviews Microbiology
, vol.10
, pp. 538-550
-
-
Faust, K.1
Raes, J.2
-
12
-
-
84864579031
-
Microbial co-occurrence relationships in the human microbiome
-
Faust K., Sathirapongsasuti J.F., Izard J., Segata N., Gevers D., Raes J., Huttenhower C. Microbial co-occurrence relationships in the human microbiome. PLoS Computational Biology 2012, 8:e1002606.
-
(2012)
PLoS Computational Biology
, vol.8
-
-
Faust, K.1
Sathirapongsasuti, J.F.2
Izard, J.3
Segata, N.4
Gevers, D.5
Raes, J.6
Huttenhower, C.7
-
13
-
-
84857879861
-
Potato soil-borne diseases, a review
-
Fiers M., Edel-Hermann V., Chatot C., Hingrat Y.L., Alabouvette C., Steinberg C. Potato soil-borne diseases, a review. Agronomy for Sustainable Development 2012, 32:93-132.
-
(2012)
Agronomy for Sustainable Development
, vol.32
, pp. 93-132
-
-
Fiers, M.1
Edel-Hermann, V.2
Chatot, C.3
Hingrat, Y.L.4
Alabouvette, C.5
Steinberg, C.6
-
14
-
-
77954241658
-
The large-scale organization of the bacterial network of ecological co-occurrence interactions
-
Freilich S., Kreimer A., Meilijson I., Gophna U., Sharan R., Ruppin E. The large-scale organization of the bacterial network of ecological co-occurrence interactions. Nucleic Acids Research 2010, 38:3857-3868.
-
(2010)
Nucleic Acids Research
, vol.38
, pp. 3857-3868
-
-
Freilich, S.1
Kreimer, A.2
Meilijson, I.3
Gophna, U.4
Sharan, R.5
Ruppin, E.6
-
15
-
-
66149150877
-
Microbial community structure and its functional implications
-
Fuhrman J.A. Microbial community structure and its functional implications. Nature 2009, 459:193-199.
-
(2009)
Nature
, vol.459
, pp. 193-199
-
-
Fuhrman, J.A.1
-
16
-
-
84855958621
-
Defining seasonal marine microbial community dynamics
-
Gilbert J.A., Steele J.A., Caporaso J.G., Steinbruck L., Reeder J., Temperton B., Huse S., McHardy A.C., Knight R., Joint I., Somerfield P., Fuhrman J.A., Field D. Defining seasonal marine microbial community dynamics. ISME Journal 2012, 6:298-308.
-
(2012)
ISME Journal
, vol.6
, pp. 298-308
-
-
Gilbert, J.A.1
Steele, J.A.2
Caporaso, J.G.3
Steinbruck, L.4
Reeder, J.5
Temperton, B.6
Huse, S.7
McHardy, A.C.8
Knight, R.9
Joint, I.10
Somerfield, P.11
Fuhrman, J.A.12
Field, D.13
-
18
-
-
14644396645
-
Functional cartography of complex metabolic networks
-
Guimera R., Amaral L.A.N. Functional cartography of complex metabolic networks. Nature 2005, 433:895-900.
-
(2005)
Nature
, vol.433
, pp. 895-900
-
-
Guimera, R.1
Amaral, L.A.N.2
-
19
-
-
0032849859
-
CAP3: a DNA sequence assembly program
-
Huang X., Madan A. CAP3: a DNA sequence assembly program. Genome Research 1999, 9:868-877.
-
(1999)
Genome Research
, vol.9
, pp. 868-877
-
-
Huang, X.1
Madan, A.2
-
20
-
-
70349493057
-
Massively parallel 454 sequencing indicates hyperdiverse fungal communities in temperate Quercus macrocarpa phyllosphere
-
Jumpponen A., Jones K.L. Massively parallel 454 sequencing indicates hyperdiverse fungal communities in temperate Quercus macrocarpa phyllosphere. New Phytologist 2009, 184:438-448.
-
(2009)
New Phytologist
, vol.184
, pp. 438-448
-
-
Jumpponen, A.1
Jones, K.L.2
-
21
-
-
77956640186
-
Vertical distribution of fungal communities in tallgrass prairie soil
-
Jumpponen A., Jones K.L., Blair J. Vertical distribution of fungal communities in tallgrass prairie soil. Mycologia 2010, 102:1027-1041.
-
(2010)
Mycologia
, vol.102
, pp. 1027-1041
-
-
Jumpponen, A.1
Jones, K.L.2
Blair, J.3
-
22
-
-
0344875024
-
Compartments revealed in food-web structure
-
Krause A.E., Frank K.A., Mason D.M., Ulanowicz R.E., Taylor W.W. Compartments revealed in food-web structure. Nature 2003, 426:282-285.
-
(2003)
Nature
, vol.426
, pp. 282-285
-
-
Krause, A.E.1
Frank, K.A.2
Mason, D.M.3
Ulanowicz, R.E.4
Taylor, W.W.5
-
23
-
-
41449085571
-
Eigengene networks for studying the relationships between co-expression modules
-
Langfelder P., Horvath S. Eigengene networks for studying the relationships between co-expression modules. BMC Systems Biology 2007, 1:54.
-
(2007)
BMC Systems Biology
, vol.1
, pp. 54
-
-
Langfelder, P.1
Horvath, S.2
-
24
-
-
0036588115
-
An analysis of trehalose, glycerol, and mannitol accumulation during heat and salt stress in a salt marsh isolate of Aureobasidium pullulans
-
Managbanag J.R., Torzilli A.P. An analysis of trehalose, glycerol, and mannitol accumulation during heat and salt stress in a salt marsh isolate of Aureobasidium pullulans. Mycologia 2002, 94:384-391.
-
(2002)
Mycologia
, vol.94
, pp. 384-391
-
-
Managbanag, J.R.1
Torzilli, A.P.2
-
25
-
-
0035511565
-
Race, school integration, and friendship segregation in America
-
Moody J. Race, school integration, and friendship segregation in America. American Journal of Sociology 2001, 107:679-716.
-
(2001)
American Journal of Sociology
, vol.107
, pp. 679-716
-
-
Moody, J.1
-
27
-
-
77956292565
-
An open source software package for automated extraction of ITS1 and ITS2 from fungal ITS sequences for use in high-throughput community assays and molecular ecology
-
Nilsson R.H., Veldre V., Hartmann M., Unterseher M., Amend A., Bergsten J., Kristiansson E., Ryberg M., Jumpponen A., Abarenkov Kessy An open source software package for automated extraction of ITS1 and ITS2 from fungal ITS sequences for use in high-throughput community assays and molecular ecology. Fungal Ecology 2010, 3:284-287.
-
(2010)
Fungal Ecology
, vol.3
, pp. 284-287
-
-
Nilsson, R.H.1
Veldre, V.2
Hartmann, M.3
Unterseher, M.4
Amend, A.5
Bergsten, J.6
Kristiansson, E.7
Ryberg, M.8
Jumpponen, A.9
Abarenkov, K.10
-
28
-
-
25144516095
-
Fungal community analysis by large-scale sequencing of environmental samples
-
O'Brien H.E., Parrent J.L., Jackson J.A., Moncalvo J.M., Vilgalys R. Fungal community analysis by large-scale sequencing of environmental samples. Applied and Environmental Microbiology 2005, 71:5544-5550.
-
(2005)
Applied and Environmental Microbiology
, vol.71
, pp. 5544-5550
-
-
O'Brien, H.E.1
Parrent, J.L.2
Jackson, J.A.3
Moncalvo, J.M.4
Vilgalys, R.5
-
29
-
-
54949113578
-
Functional organization of the transcriptome in human brain
-
Oldham M.C., Konopka G., Iwamoto K., Langfelder P., Kato T., Horvath S., Geschwind D.H. Functional organization of the transcriptome in human brain. Nature Neuroscience 2008, 11:1271-1282.
-
(2008)
Nature Neuroscience
, vol.11
, pp. 1271-1282
-
-
Oldham, M.C.1
Konopka, G.2
Iwamoto, K.3
Langfelder, P.4
Kato, T.5
Horvath, S.6
Geschwind, D.H.7
-
30
-
-
38049184486
-
The modularity of pollination networks
-
Olesen J.M., Bascompte J., Dupont Y.L., Jordano P. The modularity of pollination networks. Proceedings of the National Academy of Sciences of the United States of America 2007, 104:19891-19896.
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, pp. 19891-19896
-
-
Olesen, J.M.1
Bascompte, J.2
Dupont, Y.L.3
Jordano, P.4
-
32
-
-
72949107142
-
Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities
-
Schloss P.D., Westcott S.L., Ryabin T., Hall J.R., Hartmann M., Hollister E.B., Lesniewski R.A., Oakley B.B., Parks D.H., Robinson C.J., Sahl J.W., Stres B., Thallinger G.G., Van Horn D.J., Weber C.F. Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Applied and Environmental Microbiology 2009, 75:7537-7541.
-
(2009)
Applied and Environmental Microbiology
, vol.75
, pp. 7537-7541
-
-
Schloss, P.D.1
Westcott, S.L.2
Ryabin, T.3
Hall, J.R.4
Hartmann, M.5
Hollister, E.B.6
Lesniewski, R.A.7
Oakley, B.B.8
Parks, D.H.9
Robinson, C.J.10
Sahl, J.W.11
Stres, B.12
Thallinger, G.G.13
Van Horn, D.J.14
Weber, C.F.15
-
33
-
-
84859972408
-
Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for fungi
-
Schoch C.L., Seifert K.A., Huhndorf S., Robert V., Spouge J.L., Levesque C.A., Chen W., Fungal Barcoding Consortium Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for fungi. Proceedings of the National Academy of Sciences of the United States of America 2012, 109:6241-6246.
-
(2012)
Proceedings of the National Academy of Sciences of the United States of America
, vol.109
, pp. 6241-6246
-
-
Schoch, C.L.1
Seifert, K.A.2
Huhndorf, S.3
Robert, V.4
Spouge, J.L.5
Levesque, C.A.6
Chen, W.7
Fungal Barcoding Consortium8
-
34
-
-
0242490780
-
Cytoscape: a software environment for integrated models of biomolecular interaction networks
-
Shannon P., Markiel A., Ozier O., Baliga N.S., Wang J.T., Ramage D., Amin N., Schwikowski B., Ideker T. Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Research 2003, 13:2498-2504.
-
(2003)
Genome Research
, vol.13
, pp. 2498-2504
-
-
Shannon, P.1
Markiel, A.2
Ozier, O.3
Baliga, N.S.4
Wang, J.T.5
Ramage, D.6
Amin, N.7
Schwikowski, B.8
Ideker, T.9
-
35
-
-
0007655195
-
Monoculture and soilborne plant pathogens
-
Shipton P.J. Monoculture and soilborne plant pathogens. Annual Review of Phytopathology 1977, 15:387-407.
-
(1977)
Annual Review of Phytopathology
, vol.15
, pp. 387-407
-
-
Shipton, P.J.1
-
36
-
-
77956283658
-
454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases
-
Tedersoo L., Nilsson R.H., Abarenkov K., Jairus T., Sadam A., Saar I., Bahram M., Bechem E., Chuyong G., Kõljalg U. 454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases. New Phytologist 2010, 188:291-301.
-
(2010)
New Phytologist
, vol.188
, pp. 291-301
-
-
Tedersoo, L.1
Nilsson, R.H.2
Abarenkov, K.3
Jairus, T.4
Sadam, A.5
Saar, I.6
Bahram, M.7
Bechem, E.8
Chuyong, G.9
Kõljalg, U.10
-
37
-
-
0036023978
-
Effects of agronomical measures on the microbial diversity of soils as related to the suppression of soil-borne plant pathogens
-
van Elsas J.D., Garbeva P., Salles J. Effects of agronomical measures on the microbial diversity of soils as related to the suppression of soil-borne plant pathogens. Biodegradation 2002, 13:29-40.
-
(2002)
Biodegradation
, vol.13
, pp. 29-40
-
-
van Elsas, J.D.1
Garbeva, P.2
Salles, J.3
-
38
-
-
41349109702
-
Epidemic spreading in a variety of scale free networks
-
Volchenkov D., Volchenkova L., Blanchard P. Epidemic spreading in a variety of scale free networks. Physical Review E Statistical, Nonlinear, and Soft Matter Physics 2002, 66:046137.
-
(2002)
Physical Review E Statistical, Nonlinear, and Soft Matter Physics
, vol.66
, pp. 046137
-
-
Volchenkov, D.1
Volchenkova, L.2
Blanchard, P.3
-
39
-
-
84866617480
-
Climate change impacts in multispecies systems: drought alters food web size structure in a field experiment
-
Woodward G., Brown L.E., Edwards F.K., Hudson L.N., Milner A.M., Reuman D.C., Ledger M.E. Climate change impacts in multispecies systems: drought alters food web size structure in a field experiment. Philosophical Transactions of the Royal Society B: Biological Sciences 2012, 367:2990-2997.
-
(2012)
Philosophical Transactions of the Royal Society B: Biological Sciences
, vol.367
, pp. 2990-2997
-
-
Woodward, G.1
Brown, L.E.2
Edwards, F.K.3
Hudson, L.N.4
Milner, A.M.5
Reuman, D.C.6
Ledger, M.E.7
-
40
-
-
79952136790
-
Functional molecular ecological networks
-
e00169-10
-
Zhou J., Deng Y., Luo F., He Z., Tu Q., Zhi X. Functional molecular ecological networks. mBio 2010, 1. e00169-10.
-
(2010)
mBio
, vol.1
-
-
Zhou, J.1
Deng, Y.2
Luo, F.3
He, Z.4
Tu, Q.5
Zhi, X.6
|