메뉴 건너뛰기




Volumn 13, Issue 4, 2013, Pages 634-641

Reliable genotyping of the koala (Phascolarctos cinereus) using DNA isolated from a single faecal pellet

Author keywords

Faecal pellet; Genotyping error; Mammal; Microsatellite; Mitochondria; Sex

Indexed keywords

DNA;

EID: 84879421586     PISSN: 1755098X     EISSN: 17550998     Source Type: Journal    
DOI: 10.1111/1755-0998.12101     Document Type: Article
Times cited : (28)

References (49)
  • 1
    • 34247645921 scopus 로고    scopus 로고
    • Characterization of target nuclear DNA from faeces reduces technical issues associated with the assumptions of low-quality and quantity template
    • Ball MC, Pither R, Manseau M et al. (2007) Characterization of target nuclear DNA from faeces reduces technical issues associated with the assumptions of low-quality and quantity template. Conservation Genetics, 8, 577-586.
    • (2007) Conservation Genetics , vol.8 , pp. 577-586
    • Ball, M.C.1    Pither, R.2    Manseau, M.3
  • 3
    • 7044264955 scopus 로고    scopus 로고
    • How to track and assess genotyping errors in population genetics studies
    • Bonin A, Bellemain E, Eidesen P et al. (2004) How to track and assess genotyping errors in population genetics studies. Molecular Ecology, 13, 3261-3273.
    • (2004) Molecular Ecology , vol.13 , pp. 3261-3273
    • Bonin, A.1    Bellemain, E.2    Eidesen, P.3
  • 4
    • 77953912570 scopus 로고    scopus 로고
    • Effects of time and rainfall on PCR success using DNA extracted from deer fecal pellets
    • Brinkman T, Schwartz M, Person D, Pilgrim K, Hundertmark K (2010) Effects of time and rainfall on PCR success using DNA extracted from deer fecal pellets. Conservation Genetics, 11, 1547-1552.
    • (2010) Conservation Genetics , vol.11 , pp. 1547-1552
    • Brinkman, T.1    Schwartz, M.2    Person, D.3    Pilgrim, K.4    Hundertmark, K.5
  • 5
    • 31544432303 scopus 로고    scopus 로고
    • Melaleuca alternifolia (tea tree) oil: a review of antimicrobial and other medicinal properties
    • Carson CF, Hammer KA, Riley TV (2006) Melaleuca alternifolia (tea tree) oil: a review of antimicrobial and other medicinal properties. Clinical Microbiology Reviews, 19, 50-62.
    • (2006) Clinical Microbiology Reviews , vol.19 , pp. 50-62
    • Carson, C.F.1    Hammer, K.A.2    Riley, T.V.3
  • 7
    • 67650086660 scopus 로고    scopus 로고
    • Inbreeding and testicular abnormalities in a bottlenecked population of koalas (Phascolarctos cinereus)
    • Cristescu R, Cahill V, Sherwin WB et al. (2009) Inbreeding and testicular abnormalities in a bottlenecked population of koalas (Phascolarctos cinereus). Wildlife Research, 36, 299-308.
    • (2009) Wildlife Research , vol.36 , pp. 299-308
    • Cristescu, R.1    Cahill, V.2    Sherwin, W.B.3
  • 8
    • 84867859027 scopus 로고    scopus 로고
    • The koala - saving our national icon
    • EaCRC The Senate Printing Unit, Parliament House, Canberra Available:
    • EaCRC (2011) The koala - saving our national icon. The Senate Printing Unit, Parliament House, Canberra Available: http://www.aph.gov.au/Parliamentary_Business/Committees/Senate_Committees?url=ec_ctte/koalas/report/c01.pdf.
    • (2011)
  • 9
    • 84971036272 scopus 로고
    • Ingestion and excretion of Eucalyptus Punctata D.C. and its essential oil by the koala, Phascolarctos cinereus (Goldfuss)
    • Eberhard IH, Mcnamara J, Pearse RJ, Southwell IA (1975) Ingestion and excretion of Eucalyptus Punctata D.C. and its essential oil by the koala, Phascolarctos cinereus (Goldfuss). Australian Journal of Zoology, 23, 169-179.
    • (1975) Australian Journal of Zoology , vol.23 , pp. 169-179
    • Eberhard, I.H.1    Mcnamara, J.2    Pearse, R.J.3    Southwell, I.A.4
  • 10
  • 11
    • 67349201637 scopus 로고    scopus 로고
    • Spatiotemporal dynamics of habitat use by koalas: the checkerboard model
    • Ellis W, Melzer A, Bercovitch F (2009) Spatiotemporal dynamics of habitat use by koalas: the checkerboard model. Behavioral Ecology and Sociobiology, 63, 1181-1188.
    • (2009) Behavioral Ecology and Sociobiology , vol.63 , pp. 1181-1188
    • Ellis, W.1    Melzer, A.2    Bercovitch, F.3
  • 12
    • 0034143952 scopus 로고    scopus 로고
    • Genetic diversity and gene flow among southeastern Queensland koalas (Phascolarctos cinereus)
    • Fowler EV, Houlden BA, Hoeben P, Timms P (2000) Genetic diversity and gene flow among southeastern Queensland koalas (Phascolarctos cinereus). Molecular Ecology, 9, 155-164.
    • (2000) Molecular Ecology , vol.9 , pp. 155-164
    • Fowler, E.V.1    Houlden, B.A.2    Hoeben, P.3    Timms, P.4
  • 14
    • 0028830011 scopus 로고
    • Amplification of hypervariable simple sequence repeats (microsatellites) from excremental DNA of wild living bonobos (Pan paniscus)
    • Gerloff U, Schlotterer C, Rassmann K et al. (1995) Amplification of hypervariable simple sequence repeats (microsatellites) from excremental DNA of wild living bonobos (Pan paniscus). Molecular Ecology, 4, 515-518.
    • (1995) Molecular Ecology , vol.4 , pp. 515-518
    • Gerloff, U.1    Schlotterer, C.2    Rassmann, K.3
  • 15
    • 0029920363 scopus 로고    scopus 로고
    • Paternity exclusion in koalas using hypervariable microsatellites
    • Houlden BA, England P, Sherwin WB (1996a) Paternity exclusion in koalas using hypervariable microsatellites. Journal of Heredity, 87, 149-152.
    • (1996) Journal of Heredity , vol.87 , pp. 149-152
    • Houlden, B.A.1    England, P.2    Sherwin, W.B.3
  • 16
    • 0030119446 scopus 로고    scopus 로고
    • Low genetic variability of the koala Phascolarctos cinereus in south-eastern Australia following a severe population bottleneck
    • Houlden BA, England PR, Taylor AC, Greville WD, Sherwin WB (1996b) Low genetic variability of the koala Phascolarctos cinereus in south-eastern Australia following a severe population bottleneck. Molecular Ecology, 5, 269-281.
    • (1996) Molecular Ecology , vol.5 , pp. 269-281
    • Houlden, B.A.1    England, P.R.2    Taylor, A.C.3    Greville, W.D.4    Sherwin, W.B.5
  • 17
    • 84879412938 scopus 로고    scopus 로고
    • Ecology and Conservation State Forests of New South Wales, West Pennant Hills.
    • Jurskis V, Potter M (1997) Koala Surveys. Ecology and Conservation State Forests of New South Wales, West Pennant Hills.
    • (1997) Koala Surveys
    • Jurskis, V.1    Potter, M.2
  • 18
    • 0031800517 scopus 로고    scopus 로고
    • Structural features of tannic acid important for DNA degradation in the presence of Cu(II)
    • Khan NS, Hadi SM (1998) Structural features of tannic acid important for DNA degradation in the presence of Cu(II). Mutagenesis, 13, 271-274.
    • (1998) Mutagenesis , vol.13 , pp. 271-274
    • Khan, N.S.1    Hadi, S.M.2
  • 19
    • 0029240365 scopus 로고
    • Conservation genetics of the European brown bear - a study using excremental PCR of nuclear and mitochondrial sequences
    • Kohn M, Knauer F, Stoffella A, Schroder W, Paabo S (1995) Conservation genetics of the European brown bear - a study using excremental PCR of nuclear and mitochondrial sequences. Molecular Ecology, 4, 95-104.
    • (1995) Molecular Ecology , vol.4 , pp. 95-104
    • Kohn, M.1    Knauer, F.2    Stoffella, A.3    Schroder, W.4    Paabo, S.5
  • 20
    • 0030048084 scopus 로고    scopus 로고
    • Relief of amplification inhibition in PCR with bovine serum albumin or T4 gene 32 protein
    • Kreader CA (1996) Relief of amplification inhibition in PCR with bovine serum albumin or T4 gene 32 protein. Applied and Environmental Microbiology, 62, 1102-1106.
    • (1996) Applied and Environmental Microbiology , vol.62 , pp. 1102-1106
    • Kreader, C.A.1
  • 21
    • 38049009448 scopus 로고    scopus 로고
    • An optimisation approach to increase DNA amplification success of otter faeces
    • Lampa S, Gruber B, Henle K, Hoehn M (2008) An optimisation approach to increase DNA amplification success of otter faeces. Conservation Genetics, 9, 201-210.
    • (2008) Conservation Genetics , vol.9 , pp. 201-210
    • Lampa, S.1    Gruber, B.2    Henle, K.3    Hoehn, M.4
  • 22
    • 84863346229 scopus 로고    scopus 로고
    • Genetic analysis reveals a distinct and highly diverse koala (Phascolarctos cinereus) population in South Gippsland, Victoria, Australia
    • Lee T, Zenger KR, Close RL, Phalen DN (2011) Genetic analysis reveals a distinct and highly diverse koala (Phascolarctos cinereus) population in South Gippsland, Victoria, Australia. Australian Mammalogy, 34, 68-74.
    • (2011) Australian Mammalogy , vol.34 , pp. 68-74
    • Lee, T.1    Zenger, K.R.2    Close, R.L.3    Phalen, D.N.4
  • 23
    • 0031063187 scopus 로고    scopus 로고
    • Analysis of the intron-exon structure of the G6PD gene of the wallaroo (Macropus robustus) by polymerase chain reaction
    • Loebel D, Johnston P (1997) Analysis of the intron-exon structure of the G6PD gene of the wallaroo (Macropus robustus) by polymerase chain reaction. Mammalian Genome, 8, 146-147.
    • (1997) Mammalian Genome , vol.8 , pp. 146-147
    • Loebel, D.1    Johnston, P.2
  • 24
    • 0029257257 scopus 로고
    • Full-length cDNA sequence of X-linked G6PD of an Australian marsupial, the wallaroo
    • Loebel DA, Longhurst TJ, Johnston PG (1995) Full-length cDNA sequence of X-linked G6PD of an Australian marsupial, the wallaroo. Mammalian Genome, 6, 198-201.
    • (1995) Mammalian Genome , vol.6 , pp. 198-201
    • Loebel, D.A.1    Longhurst, T.J.2    Johnston, P.G.3
  • 25
    • 38649135444 scopus 로고    scopus 로고
    • Low genotyping error rates and noninvasive sampling in bighorn sheep
    • Luikart G, Zundel S, Rioux D et al. (2008) Low genotyping error rates and noninvasive sampling in bighorn sheep. Journal of Wildlife Management, 72, 299-304.
    • (2008) Journal of Wildlife Management , vol.72 , pp. 299-304
    • Luikart, G.1    Zundel, S.2    Rioux, D.3
  • 27
    • 42649128778 scopus 로고    scopus 로고
    • Minitab Minitab Inc., State College, Pennsylvania
    • Minitab (2007) Minitab 15 Statistical Software. Minitab Inc., State College, Pennsylvania (www.minitab.com).
    • (2007) Minitab 15 Statistical Software
  • 28
    • 84867293252 scopus 로고    scopus 로고
    • GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research - an update
    • Peakall R, Smouse P (2012) GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research - an update. Bioinformatics, 28, 2537-2539.
    • (2012) Bioinformatics , vol.28 , pp. 2537-2539
    • Peakall, R.1    Smouse, P.2
  • 29
    • 81755187603 scopus 로고    scopus 로고
    • The spot assessment technique: a tool for determining localised levels of habitat use by Koalas Phascolarctos cinereus
    • Phillips S, Callaghan J (2011) The spot assessment technique: a tool for determining localised levels of habitat use by Koalas Phascolarctos cinereus. Australian Zoologist, 35, 774-780.
    • (2011) Australian Zoologist , vol.35 , pp. 774-780
    • Phillips, S.1    Callaghan, J.2
  • 30
    • 12344273144 scopus 로고    scopus 로고
    • Effect of sample age and season of collection on the reliability of microsatellite genotyping of faecal DNA
    • Piggott MP (2004) Effect of sample age and season of collection on the reliability of microsatellite genotyping of faecal DNA. Wildlife Research, 31, 485-493.
    • (2004) Wildlife Research , vol.31 , pp. 485-493
    • Piggott, M.P.1
  • 31
    • 0345581714 scopus 로고    scopus 로고
    • Extensive evaluation of faecal preservation and DNA extraction methods in Australian native and introduced species
    • Piggott MP, Taylor AC (2003a) Extensive evaluation of faecal preservation and DNA extraction methods in Australian native and introduced species. Australian Journal of Zoology, 51, 341-355.
    • (2003) Australian Journal of Zoology , vol.51 , pp. 341-355
    • Piggott, M.P.1    Taylor, A.C.2
  • 32
    • 0037692833 scopus 로고    scopus 로고
    • Remote collection of animal DNA and its applications in conservation management and understanding the population biology of rare and cryptic species
    • Piggott MP, Taylor AC (2003b) Remote collection of animal DNA and its applications in conservation management and understanding the population biology of rare and cryptic species. Wildlife Research, 30, 1-13.
    • (2003) Wildlife Research , vol.30 , pp. 1-13
    • Piggott, M.P.1    Taylor, A.C.2
  • 34
    • 0031105089 scopus 로고    scopus 로고
    • Molecular scatology: the use of molecular genetic analysis to assign species, sex and individual identity to seal faeces
    • Reed JZ, Tollit DJ, Thompson PM, Amos W (1997) Molecular scatology: the use of molecular genetic analysis to assign species, sex and individual identity to seal faeces. Molecular Ecology, 6, 225-234.
    • (1997) Molecular Ecology , vol.6 , pp. 225-234
    • Reed, J.Z.1    Tollit, D.J.2    Thompson, P.M.3    Amos, W.4
  • 35
    • 60349092446 scopus 로고    scopus 로고
    • Effects of storage type and time on DNA amplification success in tropical ungulate faeces
    • Soto-Calderon ID, Ntie S, Mickala P et al. (2009) Effects of storage type and time on DNA amplification success in tropical ungulate faeces. Molecular Ecology Resources, 9, 471-479.
    • (2009) Molecular Ecology Resources , vol.9 , pp. 471-479
    • Soto-Calderon, I.D.1    Ntie, S.2    Mickala, P.3
  • 36
    • 71349083992 scopus 로고    scopus 로고
    • Sampling error in non-invasive genetic analyses of an endangered social carnivore
    • Spiering P, Gunther M, Wildt D, Somers M, Maldonado J (2009) Sampling error in non-invasive genetic analyses of an endangered social carnivore. Conservation Genetics, 10, 2005-2007.
    • (2009) Conservation Genetics , vol.10 , pp. 2005-2007
    • Spiering, P.1    Gunther, M.2    Wildt, D.3    Somers, M.4    Maldonado, J.5
  • 37
  • 38
    • 0036972020 scopus 로고    scopus 로고
    • Low-density koala (Phascolarctos cinereus) populations in the mulgalands of south-west Queensland. I. Faecal pellet sampling protocol
    • Sullivan BJ, Baxter GS, Lisle AT (2002) Low-density koala (Phascolarctos cinereus) populations in the mulgalands of south-west Queensland. I. Faecal pellet sampling protocol. Wildlife Research, 29, 455-462.
    • (2002) Wildlife Research , vol.29 , pp. 455-462
    • Sullivan, B.J.1    Baxter, G.S.2    Lisle, A.T.3
  • 39
    • 0842276754 scopus 로고    scopus 로고
    • Low-density koala (Phascolarctos cinereus) populations in the mulgalands of south-west Queensland. IV. Abundance and conservation status
    • Sullivan BJ, Baxter GS, Lisle AT, Pahl L, Norris WM (2004) Low-density koala (Phascolarctos cinereus) populations in the mulgalands of south-west Queensland. IV. Abundance and conservation status. Wildlife Research, 31, 19-29.
    • (2004) Wildlife Research , vol.31 , pp. 19-29
    • Sullivan, B.J.1    Baxter, G.S.2    Lisle, A.T.3    Pahl, L.4    Norris, W.M.5
  • 42
    • 0030161122 scopus 로고    scopus 로고
    • Marine mammal faeces as a source of DNA
    • Tikel D, Blair D, Marsh HD (1996) Marine mammal faeces as a source of DNA. Molecular Ecology, 5, 456-457.
    • (1996) Molecular Ecology , vol.5 , pp. 456-457
    • Tikel, D.1    Blair, D.2    Marsh, H.D.3
  • 43
    • 0036734955 scopus 로고    scopus 로고
    • GIMLET: a computer program for analysing genetic individual identification data
    • Valière N (2002) GIMLET: a computer program for analysing genetic individual identification data. Molecular Ecology Notes, 2, 377-379.
    • (2002) Molecular Ecology Notes , vol.2 , pp. 377-379
    • Valière, N.1
  • 44
    • 0036216844 scopus 로고    scopus 로고
    • GEMINI: software for testing the effects of genotyping errors and multitubes approach for individual identification
    • Valière N, Berthier P, Mouchiroud D, Pontier D (2002) GEMINI: software for testing the effects of genotyping errors and multitubes approach for individual identification. Molecular Ecology Notes, 2, 83-86.
    • (2002) Molecular Ecology Notes , vol.2 , pp. 83-86
    • Valière, N.1    Berthier, P.2    Mouchiroud, D.3    Pontier, D.4
  • 45
    • 33645689896 scopus 로고    scopus 로고
    • Noninvasive genetic sampling tools for wildlife biologists: a review of applications and recommendations for accurate data collection
    • Waits LP, Paetkau D (2005) Noninvasive genetic sampling tools for wildlife biologists: a review of applications and recommendations for accurate data collection. Journal of Wildlife Management, 69, 1419-1433.
    • (2005) Journal of Wildlife Management , vol.69 , pp. 1419-1433
    • Waits, L.P.1    Paetkau, D.2
  • 46
    • 65249087923 scopus 로고    scopus 로고
    • Leader of the pack: faecal pellet deposition order impacts PCR amplification in wombats
    • Walker FM, Horsup A, Taylor AC (2009) Leader of the pack: faecal pellet deposition order impacts PCR amplification in wombats. Molecular Ecology Resources, 9, 720-724.
    • (2009) Molecular Ecology Resources , vol.9 , pp. 720-724
    • Walker, F.M.1    Horsup, A.2    Taylor, A.C.3
  • 47
    • 0031820540 scopus 로고    scopus 로고
    • Sex-chromosome elimination in the bandicoot Isoodon macrourus using Y-linked markers
    • Watson CM, Margan SH, Johnston PG (1998) Sex-chromosome elimination in the bandicoot Isoodon macrourus using Y-linked markers. Cytogenetics and Cell Genetics, 81, 54.
    • (1998) Cytogenetics and Cell Genetics , vol.81 , pp. 54
    • Watson, C.M.1    Margan, S.H.2    Johnston, P.G.3
  • 48
    • 6044267454 scopus 로고    scopus 로고
    • Experiments in DNA extraction and PCR amplification from bighorn sheep feces: the importance of DNA extraction method
    • Wehausen JD, Ramey RR, Epps CW (2004) Experiments in DNA extraction and PCR amplification from bighorn sheep feces: the importance of DNA extraction method. Journal of Heredity, 95, 503-509.
    • (2004) Journal of Heredity , vol.95 , pp. 503-509
    • Wehausen, J.D.1    Ramey, R.R.2    Epps, C.W.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.