메뉴 건너뛰기




Volumn 8, Issue 3, 2007, Pages 577-586

Characterization of target nuclear DNA from faeces reduces technical issues associated with the assumptions of low-quality and quantity template

Author keywords

DNA quantification; Non invasive; Population genetics; Swift fox; Woodland caribou

Indexed keywords

CANID; CONSERVATION GENETICS; DEER; DNA; FECES; GENETIC ANALYSIS; GENETIC MARKER; POLYMERASE CHAIN REACTION; POPULATION GENETICS;

EID: 34247645921     PISSN: 15660621     EISSN: 15729737     Source Type: Journal    
DOI: 10.1007/s10592-006-9193-y     Document Type: Article
Times cited : (87)

References (40)
  • 1
    • 0036076604 scopus 로고    scopus 로고
    • Wombat coprogenetics: Enumerating a common wombat population by analysis of faecal DNA
    • Banks SC, Piggott MP, Hansen BD, Robinson NA, Taylor AC (2002) Wombat coprogenetics: enumerating a common wombat population by analysis of faecal DNA. Aust J Zool 50:193-204
    • (2002) Aust J Zool , vol.50 , pp. 193-204
    • Banks, S.C.1    Piggott, M.P.2    Hansen, B.D.3    Robinson, N.A.4    Taylor, A.C.5
  • 2
    • 4344600645 scopus 로고    scopus 로고
    • Improved non-invasive genotyping method: Application to brown bear (Ursus arctos) feces
    • Bellemain E, Taberlet P (2004) Improved non-invasive genotyping method: application to brown bear (Ursus arctos) feces. Mol Ecol Notes 4:519-522
    • (2004) Mol Ecol Notes , vol.4 , pp. 519-522
    • Bellemain, E.1    Taberlet, P.2
  • 3
    • 7044241290 scopus 로고    scopus 로고
    • Quantifying genotyping errors in non-invasive population genetics
    • Broquet T, Petit E (2004) Quantifying genotyping errors in non-invasive population genetics. Mol Ecol 13:3601-3608
    • (2004) Mol Ecol , vol.13 , pp. 3601-3608
    • Broquet, T.1    Petit, E.2
  • 4
    • 34247613271 scopus 로고    scopus 로고
    • Isolation and characterization of Swift Fox tetranucleotide microsatellite loci
    • in press
    • Cullingham CI, Smeeton C, White BN (2006) Isolation and characterization of Swift Fox tetranucleotide microsatellite loci. Mol Ecol Notes (in press)
    • (2006) Mol Ecol Notes
    • Cullingham, C.I.1    Smeeton, C.2    White, B.N.3
  • 5
    • 10744230085 scopus 로고    scopus 로고
    • Identifying species from pieces of faeces
    • Dalèn L, Götherström A (2004) Identifying species from pieces of faeces. Conserv Genet 5:109-111
    • (2004) Conserv Genet , vol.5 , pp. 109-111
    • Dalèn, L.1    Götherström, A.2
  • 6
    • 0034007128 scopus 로고    scopus 로고
    • Molecular tracking of mountain lions in the Yosemite Valley region in California: Genetic analysis using microsatellites and faecal DNA
    • Ernest HB, Penedo CT, May BP, Syvanen M, Boyce WM (2000) Molecular tracking of mountain lions in the Yosemite Valley region in California: genetic analysis using microsatellites and faecal DNA. Mol Ecol 9:433-441
    • (2000) Mol Ecol , vol.9 , pp. 433-441
    • Ernest, H.B.1    Penedo, C.T.2    May, B.P.3    Syvanen, M.4    Boyce, W.M.5
  • 7
    • 0033781884 scopus 로고    scopus 로고
    • Dietary separation of sympatric carnivores identified by molecular analysis of scats
    • Farrell LE, Romant J, Sunquist ME (2000) Dietary separation of sympatric carnivores identified by molecular analysis of scats. Mol Ecol 9:1583-1590
    • (2000) Mol Ecol , vol.9 , pp. 1583-1590
    • Farrell, L.E.1    Romant, J.2    Sunquist, M.E.3
  • 9
    • 0033137133 scopus 로고    scopus 로고
    • A reliable non-invasive genotyping based on excremental PCR of nuclear DNA purified with a magnetic bead protocol
    • Flagstad O, Roed K, Stacy JE, Jakobsen KS (1999) A reliable non-invasive genotyping based on excremental PCR of nuclear DNA purified with a magnetic bead protocol. Mol Ecol 8:879-883
    • (1999) Mol Ecol , vol.8 , pp. 879-883
    • Flagstad, O.1    Roed, K.2    Stacy, J.E.3    Jakobsen, K.S.4
  • 11
    • 0034710344 scopus 로고    scopus 로고
    • An investigation of the rigor of interpretation sites for STRs derived from less than 0.1 ng of DNA
    • Gill P, Whitaker JP, Flaxman C, Brown N, Buckleton J (2000) An investigation of the rigor of interpretation sites for STRs derived from less than 0.1 ng of DNA. Forensic Sci Int 112:17-40
    • (2000) Forensic Sci Int , vol.112 , pp. 17-40
    • Gill, P.1    Whitaker, J.P.2    Flaxman, C.3    Brown, N.4    Buckleton, J.5
  • 12
    • 0028830011 scopus 로고
    • Amplification of hypervariable simple sequence repeats (microsatellites) from excremental DNA of wild living bonobos (Pan paniscus)
    • Gerloff U, Schlotterer C, Rassmann K, Rambold I, Hohmann G, Fruth B, Tautz D (1995) Amplification of hypervariable simple sequence repeats (microsatellites) from excremental DNA of wild living bonobos (Pan paniscus). Mol Ecol 4:515-518
    • (1995) Mol Ecol , vol.4 , pp. 515-518
    • Gerloff, U.1    Schlotterer, C.2    Rassmann, K.3    Rambold, I.4    Hohmann, G.5    Fruth, B.6    Tautz, D.7
  • 15
    • 14044278000 scopus 로고    scopus 로고
    • Faecal DNA typing to determine the abundance and spatial organisation of otters (Lutra lutra) along two stream systems in Kinmen
    • Hung CM, Li SH, Lee LL (2004) Faecal DNA typing to determine the abundance and spatial organisation of otters (Lutra lutra) along two stream systems in Kinmen. Anim Conserv 7:301-311
    • (2004) Anim Conserv , vol.7 , pp. 301-311
    • Hung, C.M.1    Li, S.H.2    Lee, L.L.3
  • 17
    • 0031285080 scopus 로고    scopus 로고
    • Facts from faeces revisited
    • Kohn MH, Wayne RK (1997) Facts from faeces revisited. Trends Ecol Evol 12:223-227
    • (1997) Trends Ecol Evol , vol.12 , pp. 223-227
    • Kohn, M.H.1    Wayne, R.K.2
  • 18
    • 0030048084 scopus 로고    scopus 로고
    • Relief of amplification inhibition in PCR with bovine serum albumin or T4 gene 32 protein
    • Kreader CA (1996) Relief of amplification inhibition in PCR with bovine serum albumin or T4 gene 32 protein. Appl Environ Microbiol 62:1102-1106
    • (1996) Appl Environ Microbiol , vol.62 , pp. 1102-1106
    • Kreader, C.A.1
  • 20
  • 21
    • 0035999365 scopus 로고    scopus 로고
    • Non-invasive molecular tracking of colonizing wolf (Canis lupus) packs in the western Italian Alps
    • Lucchini V, Fabbri E, Marucco F, Ricci S, Boitani L, Randi E (2002) Non-invasive molecular tracking of colonizing wolf (Canis lupus) packs in the western Italian Alps. Mol Ecol 11:857-868
    • (2002) Mol Ecol , vol.11 , pp. 857-868
    • Lucchini, V.1    Fabbri, E.2    Marucco, F.3    Ricci, S.4    Boitani, L.5    Randi, E.6
  • 23
    • 0036160390 scopus 로고    scopus 로고
    • Assessing allelic drop-out and genotype reliability using maximum likelihood
    • Miller CR, Joyce P, Waits LP (2002) Assessing allelic drop-out and genotype reliability using maximum likelihood. Genetics 160:357-366
    • (2002) Genetics , vol.160 , pp. 357-366
    • Miller, C.R.1    Joyce, P.2    Waits, L.P.3
  • 25
    • 0034915201 scopus 로고    scopus 로고
    • Quantitative PCR analysis of DNA from noninvasive samples for accurate microsatellite genotyping of wild chimpanzees (Pan troglodytes verus)
    • Morin PA, Chambers KE, Boesch C, Vigilant L (2001) Quantitative PCR analysis of DNA from noninvasive samples for accurate microsatellite genotyping of wild chimpanzees (Pan troglodytes verus). Mol Ecol 10:1835-1844
    • (2001) Mol Ecol , vol.10 , pp. 1835-1844
    • Morin, P.A.1    Chambers, K.E.2    Boesch, C.3    Vigilant, L.4
  • 26
    • 0042206743 scopus 로고    scopus 로고
    • The influence of diet on faecal DNA amplification and sex identification in brown bears (Ursus arctos)
    • Murphy MA, Waits LP, Kendall KC (2003) The influence of diet on faecal DNA amplification and sex identification in brown bears (Ursus arctos). Mol Ecol 12:2261-2265
    • (2003) Mol Ecol , vol.12 , pp. 2261-2265
    • Murphy, M.A.1    Waits, L.P.2    Kendall, K.C.3
  • 27
    • 0026541338 scopus 로고
    • A multiple tubes approach for accurate genotyping of very small DNA samples by using PCR: Statistical considerations
    • Navidi W, Arnheim N, Waterman MS (1992) A multiple tubes approach for accurate genotyping of very small DNA samples by using PCR: statistical considerations. Am J Hum Genet 50:347-359
    • (1992) Am J Hum Genet , vol.50 , pp. 347-359
    • Navidi, W.1    Arnheim, N.2    Waterman, M.S.3
  • 28
    • 12344273144 scopus 로고    scopus 로고
    • Effect of sample age and season of collection on the reliability of microsatellite genotyping of faecal DNA
    • Piggott MP (2004) Effect of sample age and season of collection on the reliability of microsatellite genotyping of faecal DNA. Wildl Res 31:485-493
    • (2004) Wildl Res , vol.31 , pp. 485-493
    • Piggott, M.P.1
  • 29
    • 0345581714 scopus 로고    scopus 로고
    • Extensive evaluation of faecal preservation and DNA extraction methods in Australian native and introduced species
    • Piggott MP, Taylor AC (2003) Extensive evaluation of faecal preservation and DNA extraction methods in Australian native and introduced species. Aust J Zool 51:341-355
    • (2003) Aust J Zool , vol.51 , pp. 341-355
    • Piggott, M.P.1    Taylor, A.C.2
  • 30
    • 12444257783 scopus 로고    scopus 로고
    • Evaluating mixed samples as a source of error in non-invasive genetic studies using microsatellites
    • Roon DA, Thomas ME, Kendall C, Waits LP (2005) Evaluating mixed samples as a source of error in non-invasive genetic studies using microsatellites. Mol Ecol 14:195-201
    • (2005) Mol Ecol , vol.14 , pp. 195-201
    • Roon, D.A.1    Thomas, M.E.2    Kendall, C.3    Waits, L.P.4
  • 31
    • 0037328305 scopus 로고    scopus 로고
    • A reliable molecular method of gender determination for mammals
    • Shaw CN, Wilson PJ, White BN (2003) A reliable molecular method of gender determination for mammals. J Mammal 84:123-128
    • (2003) J Mammal , vol.84 , pp. 123-128
    • Shaw, C.N.1    Wilson, P.J.2    White, B.N.3
  • 33
    • 0033178320 scopus 로고    scopus 로고
    • Non-invasive genetic sampling: Look before you leap
    • Taberlet P, Waits LP, Luikart G (1999) Non-invasive genetic sampling: look before you leap. Trends Ecol Evol 14:323-327
    • (1999) Trends Ecol Evol , vol.14 , pp. 323-327
    • Taberlet, P.1    Waits, L.P.2    Luikart, G.3
  • 34
    • 33645689896 scopus 로고    scopus 로고
    • Noninvasive genetic sampling tools for wildlife biologists: A review of applications and recommendations for accurate data collection
    • Waits LP, Paetkau D (2005) Noninvasive genetic sampling tools for wildlife biologists: a review of applications and recommendations for accurate data collection. J Wildl Manage 69:1419-1433
    • (2005) J Wildl Manage , vol.69 , pp. 1419-1433
    • Waits, L.P.1    Paetkau, D.2
  • 35
    • 0031281788 scopus 로고    scopus 로고
    • Techniques for application of faecal DNA methods to field studies in Ursids
    • Wasser SK, Houston CS, Koehler GM, Cadd GG, Fain SR (1997) Techniques for application of faecal DNA methods to field studies in Ursids. Mol Ecol 6:1091-1097
    • (1997) Mol Ecol , vol.6 , pp. 1091-1097
    • Wasser, S.K.1    Houston, C.S.2    Koehler, G.M.3    Cadd, G.G.4    Fain, S.R.5
  • 36
    • 6044267454 scopus 로고    scopus 로고
    • Experiments in DNA extraction and PCR amplification from bighorn sheep feces: The importance of DNA extraction method
    • Wehausen JD, Ramey RR II, Epps CW (2004) Experiments in DNA extraction and PCR amplification from bighorn sheep feces: the importance of DNA extraction method. J Hered 95:503-509
    • (2004) J Hered , vol.95 , pp. 503-509
    • Wehausen, J.D.1    Ramey II, R.R.2    Epps, C.W.3
  • 37
    • 0035582255 scopus 로고    scopus 로고
    • A comparison of the characteristics of profiles produced with the AMPFISTR SGM Plus multiplex system for both standard and low copy number (LCN) STR DNA analysis
    • Whitaker JP, Cotton EA, Gill P (2001) A comparison of the characteristics of profiles produced with the AMPFISTR SGM Plus multiplex system for both standard and low copy number (LCN) STR DNA analysis. Forensic Sci Int 123:215-223
    • (2001) Forensic Sci Int , vol.123 , pp. 215-223
    • Whitaker, J.P.1    Cotton, E.A.2    Gill, P.3
  • 38
    • 0031193895 scopus 로고    scopus 로고
    • Characterization of microsatellite loci in woodland caribou Rangifer tarandus, and their use in other artiodactyls
    • Wilson GA, Strobeck C, Wu L, Coffin JW (1997) Characterization of microsatellite loci in woodland caribou Rangifer tarandus, and their use in other artiodactyls. Mol Ecol 6:697-699
    • (1997) Mol Ecol , vol.6 , pp. 697-699
    • Wilson, G.A.1    Strobeck, C.2    Wu, L.3    Coffin, J.W.4
  • 39
    • 0038444188 scopus 로고    scopus 로고
    • Estimation of badger abundance using faecal DNA typing
    • Wilson GJ, Frantz AC, Pope LC et al (2003) Estimation of badger abundance using faecal DNA typing. J Appl Ecol 40:658-666
    • (2003) J Appl Ecol , vol.40 , pp. 658-666
    • Wilson, G.J.1    Frantz, A.C.2    Pope, L.C.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.