메뉴 건너뛰기




Volumn 2013, Issue , 2013, Pages

bc-GenExMiner 3.0: New mining module computes breast cancer gene expression correlation analyses

Author keywords

[No Author keywords available]

Indexed keywords

ESTROGEN RECEPTOR; TUMOR PROTEIN;

EID: 84879381314     PISSN: 17580463     EISSN: None     Source Type: Journal    
DOI: 10.1093/database/bas060     Document Type: Article
Times cited : (214)

References (23)
  • 1
    • 84856229628 scopus 로고    scopus 로고
    • bc-GenExMiner: An easy-to-use online platform for gene prognostic analyses in breast cancer
    • Jézéquel,P., Campone,M., Gouraud,W. et al. (2012) bc-GenExMiner: an easy-to-use online platform for gene prognostic analyses in breast cancer. Breast Cancer Res. Treat., 131, 765-774.
    • (2012) Breast Cancer Res. Treat. , vol.131 , pp. 765-774
    • Jézéquel, P.1    Campone, M.2    Gouraud, W.3
  • 2
    • 0034069495 scopus 로고    scopus 로고
    • Gene ontology: Tool for the unification of biology. The gene ontology consortium
    • Ashburner,M., Ball,C.A., Blake,J.A. et al. (2000) Gene ontology: tool for the unification of biology. The gene ontology consortium. Nat. Genet., 25, 25-29.
    • (2000) Nat. Genet. , vol.25 , pp. 25-29
    • Ashburner, M.1    Ball, C.A.2    Blake, J.A.3
  • 3
    • 79960015997 scopus 로고    scopus 로고
    • Identification of human triple-negative breast cancer subtypes and preclinical models for selection of targeted therapies
    • Lehmann,B.D., Bauer,J.A., Chen,X. et al. (2011) Identification of human triple-negative breast cancer subtypes and preclinical models for selection of targeted therapies. J. Clin. Invest., 121, 2750-2767.
    • (2011) J. Clin. Invest. , vol.121 , pp. 2750-2767
    • Lehmann, B.D.1    Bauer, J.A.2    Chen, X.3
  • 4
    • 9244248684 scopus 로고    scopus 로고
    • Array comparative genomic hybridization analysis of genomic alterations in breast cancer subtypes
    • Loo,L.W., Grove,D.I., Williams,E.M. et al. (2004) Array comparative genomic hybridization analysis of genomic alterations in breast cancer subtypes. Cancer Res., 64, 8541-8549.
    • (2004) Cancer Res. , vol.64 , pp. 8541-8549
    • Loo, L.W.1    Grove, D.I.2    Williams, E.M.3
  • 5
    • 33748939380 scopus 로고    scopus 로고
    • Distinct patterns of DNA copy number alteration are associated with different clinicopathological features and gene-expression subtypes of breast cancer
    • Bergamaschi,A., Kim,Y.H., Wang,P. et al. (2006) Distinct patterns of DNA copy number alteration are associated with different clinicopathological features and gene-expression subtypes of breast cancer. Genes Chromosomes Cancer, 45, 1033-1040.
    • (2006) Genes Chromosomes Cancer , vol.45 , pp. 1033-1040
    • Bergamaschi, A.1    Kim, Y.H.2    Wang, P.3
  • 6
    • 33845191779 scopus 로고    scopus 로고
    • Genomic and transcriptional aberrations linked to breast cancer pathophysiologies
    • Chin,K., DeVries,S., Fridlyand,J. et al. (2006) Genomic and transcriptional aberrations linked to breast cancer pathophysiologies. Cancer Cell, 10, 529-541.
    • (2006) Cancer Cell , vol.10 , pp. 529-541
    • Chin, K.1    DeVries, S.2    Fridlyand, J.3
  • 7
    • 58149330982 scopus 로고    scopus 로고
    • Meta-analysis of gene expression profiles in breast cancer: Toward a unified understanding of breast cancer subtyping and prognosis signatures
    • Wirapati,P., Sotiriou,C., Kunkel,S. et al. (2008) Meta-analysis of gene expression profiles in breast cancer: toward a unified understanding of breast cancer subtyping and prognosis signatures. Breast Cancer Res., 10, R65.
    • (2008) Breast Cancer Res. , vol.10
    • Wirapati, P.1    Sotiriou, C.2    Kunkel, S.3
  • 8
    • 70349578800 scopus 로고    scopus 로고
    • 38-gene expression signature to predict metastasis risk in node-positive breast cancer after systemic adjuvant chemotherapy: A genomic substudy of PACS01 clinical trial
    • Jézéquel,P., Campone,M., Roché,H. et al. (2009) 38-gene expression signature to predict metastasis risk in node-positive breast cancer after systemic adjuvant chemotherapy: a genomic substudy of PACS01 clinical trial. Breast Cancer Res. Treat., 116, 509-520.
    • (2009) Breast Cancer Res. Treat. , vol.116 , pp. 509-520
    • Jézéquel, P.1    Campone, M.2    Roché, H.3
  • 9
    • 67649873218 scopus 로고    scopus 로고
    • Validation of UBE2C as a prognostic marker in node-positive breast cancer
    • Loussouarn,D., Campion,L., Leclair,F. et al. (2009) Validation of UBE2C as a prognostic marker in node-positive breast cancer. Br. J. Cancer, 101, 166-173.
    • (2009) Br. J. Cancer , vol.101 , pp. 166-173
    • Loussouarn, D.1    Campion, L.2    Leclair, F.3
  • 10
    • 2442670465 scopus 로고    scopus 로고
    • About GATA3, HNF3A, and XBP1, three genes co-expressed with the oestrogen receptor-α gene (ESR1) in breast cancer
    • Lacroix,M. and Leclercq,G. (2004) About GATA3, HNF3A, and XBP1, three genes co-expressed with the oestrogen receptor-α gene (ESR1) in breast cancer. Mol. Cell Endocrinol., 219, 1-7.
    • (2004) Mol. Cell Endocrinol. , vol.219 , pp. 1-7
    • Lacroix, M.1    Leclercq, G.2
  • 11
    • 76749129707 scopus 로고    scopus 로고
    • Complex sense-antisense architecture of TNAIP1/POLDIP2 on 17q11.2 represents a novel transcriptional structural-functional gene module involved in breast cancer progression
    • Grinchuk,O.V., Motakis,E. and Kuznetsov,V.A. (2010) Complex sense-antisense architecture of TNAIP1/POLDIP2 on 17q11.2 represents a novel transcriptional structural-functional gene module involved in breast cancer progression. BMC Genomics, 11, 1S9.
    • (2010) BMC Genomics , vol.11
    • Grinchuk, O.V.1    Motakis, E.2    Kuznetsov, V.A.3
  • 12
    • 77956455124 scopus 로고    scopus 로고
    • Genomic distance entrained clustering and regression modeling highlights interacting genomic regions contributing to proliferation in breast cancer
    • Dexter,T.J., Sims,D., Mitsopoulos,C. et al. (2010) Genomic distance entrained clustering and regression modeling highlights interacting genomic regions contributing to proliferation in breast cancer. BMC Syst. Biol., 4, 127.
    • (2010) BMC Syst. Biol. , vol.4 , pp. 127
    • Dexter, T.J.1    Sims, D.2    Mitsopoulos, C.3
  • 13
    • 84861598906 scopus 로고    scopus 로고
    • Validation of tumour-associated macrophage ferritin light chain as a prognostic biomarker in node-negative breast cancer tumours: A multicentric 2004 national PHRC study
    • Jézéquel,P., Campion,L., Spyratos,F. et al. (2012) Validation of tumour-associated macrophage ferritin light chain as a prognostic biomarker in node-negative breast cancer tumours: a multicentric 2004 national PHRC study. Int. J. Cancer, 131, 426-437.
    • (2012) Int. J. Cancer , vol.131 , pp. 426-437
    • Jézéquel, P.1    Campion, L.2    Spyratos, F.3
  • 14
    • 34548776990 scopus 로고    scopus 로고
    • Identification of aberrant chromosomal regions from gene expression microarray studies applied to human breast cancer
    • Buness,A., Kuner,R., Ruschhaupt,M. et al. (2007) Identification of aberrant chromosomal regions from gene expression microarray studies applied to human breast cancer. Bioinformatics, 23, 2273-2280.
    • (2007) Bioinformatics , vol.23 , pp. 2273-2280
    • Buness, A.1    Kuner, R.2    Ruschhaupt, M.3
  • 15
    • 79955599577 scopus 로고    scopus 로고
    • ESR1 is co-expressed with closely adjacent uncharacterized genes spanning a breast cancer susceptibility locus at 6q25.1
    • Dunbier,A.K., Anderson,H., Ghazoui,Z. et al. (2011) ESR1 is co-expressed with closely adjacent uncharacterized genes spanning a breast cancer susceptibility locus at 6q25.1. PLoS Genet., e1001382.
    • (2011) PLoS Genet.
    • Dunbier, A.K.1    Anderson, H.2    Ghazoui, Z.3
  • 16
    • 52049083886 scopus 로고    scopus 로고
    • Characterization of the recurrent 8p11-12 amplicon identifies PPAPDC1B, a phosphatase protein, as a new therapeutic target in breast cancer
    • Bernard-Pierrot,I., Gruel,N., Stransky,N. et al. (2008) Characterization of the recurrent 8p11-12 amplicon identifies PPAPDC1B, a phosphatase protein, as a new therapeutic target in breast cancer. Cancer Res., 68, 7165-7175.
    • (2008) Cancer Res. , vol.68 , pp. 7165-7175
    • Bernard-Pierrot, I.1    Gruel, N.2    Stransky, N.3
  • 17
    • 59449094654 scopus 로고    scopus 로고
    • Molecular characterization of breast cancer with high-resolution oligonucleotide comparative genomic hybridization array
    • André,F., Job,B., Dessen,P. et al. (2009) Molecular characterization of breast cancer with high-resolution oligonucleotide comparative genomic hybridization array. Clin. Cancer Res., 15, 441-451.
    • (2009) Clin. Cancer Res. , vol.15 , pp. 441-451
    • André, F.1    Job, B.2    Dessen, P.3
  • 18
    • 65549165975 scopus 로고    scopus 로고
    • Genetic alterations and oncogenic pathways associated with breast cancer subtypes
    • Hu,X., Stern,H.M., Ge,L. et al. (2009) Genetic alterations and oncogenic pathways associated with breast cancer subtypes. Mol. Cancer Res., 7, 511-522.
    • (2009) Mol. Cancer Res. , vol.7 , pp. 511-522
    • Hu, X.1    Stern, H.M.2    Ge, L.3
  • 19
    • 33846539080 scopus 로고    scopus 로고
    • Microarray-based comparative genomic hybridization of breast cancer patients receiving neoadjuvant chemotherapy
    • Pierga,J.Y., Reis-Filho,J.S., Cleator,S.J. et al. (2007) Microarray-based comparative genomic hybridization of breast cancer patients receiving neoadjuvant chemotherapy. Br. J. Cancer, 96, 341-351.
    • (2007) Br. J. Cancer , vol.96 , pp. 341-351
    • Pierga, J.Y.1    Reis-Filho, J.S.2    Cleator, S.J.3
  • 20
    • 43049153163 scopus 로고    scopus 로고
    • DNA copy number alterations and expression of relevant genes in triple-negative breast cancer
    • Han,W., Jung,E.M., Cho,J. et al. (2008) DNA copy number alterations and expression of relevant genes in triple-negative breast cancer. Genes Chromosomes Cancer, 47, 490-499.
    • (2008) Genes Chromosomes Cancer , vol.47 , pp. 490-499
    • Han, W.1    Jung, E.M.2    Cho, J.3
  • 21
    • 74549158222 scopus 로고    scopus 로고
    • Integration of DNA copy number alterations and prognostic gene expression signatures in breast cancer patients
    • Horlings,H.M., Lai,C., Nuyten,D.S.A. et al. (2010) Integration of DNA copy number alterations and prognostic gene expression signatures in breast cancer patients. Clin. Cancer Res., 16, 651-663.
    • (2010) Clin. Cancer Res. , vol.16 , pp. 651-663
    • Horlings, H.M.1    Lai, C.2    Nuyten, D.S.A.3
  • 22
    • 0036829790 scopus 로고    scopus 로고
    • Impact of DNA amplification on gene expression patterns in breast cancer
    • Hyman,E., Kaurianemi,P., Hautaniemi,S. et al. (2002) Impact of DNA amplification on gene expression patterns in breast cancer. Cancer Res., 62, 6240-6245.
    • (2002) Cancer Res. , vol.62 , pp. 6240-6245
    • Hyman, E.1    Kaurianemi, P.2    Hautaniemi, S.3
  • 23
    • 13844250828 scopus 로고    scopus 로고
    • Microarray analysis reveals a major direct role of DNA copy number alteration in the transcriptional program of human breast tumors
    • Pollack,J.R., Sorlie,T., Perou,C.M. et al. (2002) Microarray analysis reveals a major direct role of DNA copy number alteration in the transcriptional program of human breast tumors. Proc. Natl Acad. Sci. USA, 99, 12963-12968.
    • (2002) Proc. Natl Acad. Sci. USA , vol.99 , pp. 12963-12968
    • Pollack, J.R.1    Sorlie, T.2    Perou, C.M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.