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Volumn 117, Issue 24, 2013, Pages 7221-7227

Quantifying coulombic and solvent polarization-mediated forces between DNA helices

Author keywords

[No Author keywords available]

Indexed keywords

BIOMOLECULES; FORECASTING; NUCLEIC ACIDS; POLARIZATION; SOLVENTS;

EID: 84879356671     PISSN: 15206106     EISSN: 15205207     Source Type: Journal    
DOI: 10.1021/jp4010955     Document Type: Article
Times cited : (15)

References (63)
  • 2
    • 24344432371 scopus 로고    scopus 로고
    • Flexible Polymers Also Counterattract
    • Solis, V.; Olvera de la Cruz, M. Flexible Polymers Also Counterattract Phys. Today 2001, 54, 71-72
    • (2001) Phys. Today , vol.54 , pp. 71-72
    • Solis, V.1    Olvera De La Cruz, M.2
  • 3
    • 0031447208 scopus 로고    scopus 로고
    • DNA Condensation by Multivalent Cations
    • Bloomfield, V. A. DNA Condensation by Multivalent Cations Biopolymers 1997, 44, 269-282
    • (1997) Biopolymers , vol.44 , pp. 269-282
    • Bloomfield, V.A.1
  • 4
    • 58749105663 scopus 로고    scopus 로고
    • RNA Folding: Thermodynamic and Molecular Descriptions of the Roles of Ions
    • Draper, D. E. RNA Folding: Thermodynamic and Molecular Descriptions of the Roles of Ions Biophys. J. 2008, 95, 5489-5495
    • (2008) Biophys. J. , vol.95 , pp. 5489-5495
    • Draper, D.E.1
  • 5
    • 42449155819 scopus 로고    scopus 로고
    • RNA Folding: Conformational Statistics,Folding Kinetics, and Ion Electrostatics
    • Chen, S. RNA Folding: Conformational Statistics,Folding Kinetics, and Ion Electrostatics Annu. Rev. Biophys. 2008, 37, 197-214
    • (2008) Annu. Rev. Biophys. , vol.37 , pp. 197-214
    • Chen, S.1
  • 7
    • 84864234722 scopus 로고    scopus 로고
    • Magnesium Fluctuations Modulate RNA Dynamics in the SAM-I Riboswitch
    • Hayes, R. L.; Noel, J. K.; Mohanty, U. Magnesium Fluctuations Modulate RNA Dynamics in the SAM-I Riboswitch J. Am. Chem. Soc. 2012, 134, 12043-12053
    • (2012) J. Am. Chem. Soc. , vol.134 , pp. 12043-12053
    • Hayes, R.L.1    Noel, J.K.2    Mohanty, U.3
  • 8
    • 84872143925 scopus 로고    scopus 로고
    • Ions and RNAs: Free Energies of Counterion-Mediated RNA Fold Stabilities
    • Mak, C. H.; Henke, P. S. Ions and RNAs: Free Energies of Counterion-Mediated RNA Fold Stabilities J. Chem. Theory Comput. 2013, 9, 621-639
    • (2013) J. Chem. Theory Comput. , vol.9 , pp. 621-639
    • Mak, C.H.1    Henke, P.S.2
  • 9
    • 33846846435 scopus 로고    scopus 로고
    • Electrostatics of Rigid Polyelectrolytes
    • Wong, G. C. L. Electrostatics of Rigid Polyelectrolytes Curr. Opin. Colloid Interface Sci. 2006, 11, 310-315
    • (2006) Curr. Opin. Colloid Interface Sci. , vol.11 , pp. 310-315
    • Wong, G.C.L.1
  • 10
    • 48749140417 scopus 로고
    • Correlation and Image Charge Effects in Electric Double Layer
    • Kjellander, R.; Marcelja, S. Correlation and Image Charge Effects in Electric Double Layer Chem. Phys. Lett. 1984, 112, 49-53
    • (1984) Chem. Phys. Lett. , vol.112 , pp. 49-53
    • Kjellander, R.1    Marcelja, S.2
  • 11
    • 0030572245 scopus 로고    scopus 로고
    • Macroion Attraction Due to Electrostatic Correlation between Screening Counterions. 1. Mobile Surface-Adsorbed Ions and Diffuse Ion Cloud
    • Rouzina, I.; Bloomfield, V. A. Macroion Attraction Due to Electrostatic Correlation between Screening Counterions. 1. Mobile Surface-Adsorbed Ions and Diffuse Ion Cloud J. Phys. Chem. 1996, 100, 9977-9989
    • (1996) J. Phys. Chem. , vol.100 , pp. 9977-9989
    • Rouzina, I.1    Bloomfield, V.A.2
  • 12
    • 18344392110 scopus 로고    scopus 로고
    • Wigner Crystal Model of Counterion Induced Bundle Formation of Rodlike Polyelectrolytes
    • Shklovskii, B. Wigner Crystal Model of Counterion Induced Bundle Formation of Rodlike Polyelectrolytes Phys. Rev. Lett. 1999, 82, 3268-3271
    • (1999) Phys. Rev. Lett. , vol.82 , pp. 3268-3271
    • Shklovskii, B.1
  • 13
    • 0000824742 scopus 로고
    • The Influence of Dipole Moment Fluctuations on the Dielectric Increment of Proteins in Solution
    • Kirkwood, J. G.; Shumaker, J. B. The Influence of Dipole Moment Fluctuations on the Dielectric Increment of Proteins in Solution Proc. Natl. Acad. Sci. U.S.A. 1952, 38, 855-862
    • (1952) Proc. Natl. Acad. Sci. U.S.A. , vol.38 , pp. 855-862
    • Kirkwood, J.G.1    Shumaker, J.B.2
  • 14
    • 33645692264 scopus 로고    scopus 로고
    • Bjerrum Pairing Correlations at Charged Interfaces
    • Travesset, A.; Vaknin, D. Bjerrum Pairing Correlations at Charged Interfaces Europhys. Lett. 2006, 74, 181-187
    • (2006) Europhys. Lett. , vol.74 , pp. 181-187
    • Travesset, A.1    Vaknin, D.2
  • 15
    • 33745728321 scopus 로고    scopus 로고
    • Ion-mediated Nucleic Acid Helix-Helix Interactions
    • Tan, Z.; Chen, S. Ion-mediated Nucleic Acid Helix-Helix Interactions Biophys. J. 2006, 91, 518-536
    • (2006) Biophys. J. , vol.91 , pp. 518-536
    • Tan, Z.1    Chen, S.2
  • 16
    • 12344315321 scopus 로고
    • Precipitation of highly Charged Polyelectrolyte Solutions in the Presence of Multivalent Salts
    • Olvera de la Cruz, M.; Belloni, L.; Delsanti, M. Precipitation of highly Charged Polyelectrolyte Solutions in the Presence of Multivalent Salts J. Chem. Phys. 1995, 103, 5781-5790
    • (1995) J. Chem. Phys. , vol.103 , pp. 5781-5790
    • Olvera De La Cruz, M.1    Belloni, L.2    Delsanti, M.3
  • 17
    • 18144376538 scopus 로고    scopus 로고
    • Electrostatic Zipper Motif for DNA Aggregation
    • Kornyshev, A.; Leikin, S. Electrostatic Zipper Motif for DNA Aggregation Phys. Rev. Lett. 1999, 82, 4138-4144
    • (1999) Phys. Rev. Lett. , vol.82 , pp. 4138-4144
    • Kornyshev, A.1    Leikin, S.2
  • 18
    • 0041306048 scopus 로고    scopus 로고
    • Like-Charge Attraction between Polyelectrolytes Induced by Counterion Charge Density Waves
    • Angelini, E. E.; Liang, H.; Wriggers, W.; Wong, G. C. L. Like-Charge Attraction between Polyelectrolytes Induced by Counterion Charge Density Waves Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 8634-8637
    • (2003) Proc. Natl. Acad. Sci. U.S.A. , vol.100 , pp. 8634-8637
    • Angelini, E.E.1    Liang, H.2    Wriggers, W.3    Wong, G.C.L.4
  • 19
    • 0001533502 scopus 로고
    • Measurement of the Repulsive Force between Polyelectrolyte Molecules in Ionic Solution: Hydration Forces between Parallel DNA Double Helices
    • Rau, D. C.; Lee, B.; Parsegian, V. Measurement of the Repulsive Force between Polyelectrolyte Molecules in Ionic Solution: Hydration Forces between Parallel DNA Double Helices Proc. Natl. Acad. Sci. U.S.A. 1984, 81, 2621-2625
    • (1984) Proc. Natl. Acad. Sci. U.S.A. , vol.81 , pp. 2621-2625
    • Rau, D.C.1    Lee, B.2    Parsegian, V.3
  • 20
    • 80052495984 scopus 로고    scopus 로고
    • Salt Contribution to RNA Tertiary Structure Folding Stability
    • Tan, Z.; Chen, S. Salt Contribution to RNA Tertiary Structure Folding Stability Biophys. J. 2011, 101, 176-187
    • (2011) Biophys. J. , vol.101 , pp. 176-187
    • Tan, Z.1    Chen, S.2
  • 21
    • 0026558204 scopus 로고
    • Direct Measurement of the Intermolecular Forces between Counterion-Condensed DNA Double Helices. Evidence for Long Range Attractive Hydration Forces
    • Rau, D. C.; Parsegian, V. Direct Measurement of the Intermolecular Forces between Counterion-Condensed DNA Double Helices. Evidence for Long Range Attractive Hydration Forces Biophys. J. 1992, 61, 246-259
    • (1992) Biophys. J. , vol.61 , pp. 246-259
    • Rau, D.C.1    Parsegian, V.2
  • 22
    • 0026608715 scopus 로고
    • Direct Measurement of Temperature-Dependent Solvation Forces between DNA Double Helices
    • Rau, D. C.; Parsegian, V. Direct Measurement of Temperature-Dependent Solvation Forces between DNA Double Helices Biophys. J. 1992, 61, 260-271
    • (1992) Biophys. J. , vol.61 , pp. 260-271
    • Rau, D.C.1    Parsegian, V.2
  • 23
  • 24
    • 24644440147 scopus 로고    scopus 로고
    • Statics and Dynamics of Strongly Charged Soft Matter
    • Boroudjerdi, H.; Kim, Y. W.; Naji, A. Statics and Dynamics of Strongly Charged Soft Matter Phys. Rep. 2005, 416, 129-199
    • (2005) Phys. Rep. , vol.416 , pp. 129-199
    • Boroudjerdi, H.1    Kim, Y.W.2    Naji, A.3
  • 25
    • 77951687980 scopus 로고    scopus 로고
    • Electrostatics of Strongly Charged Biological Polymers: Ion-Mediated Interactions and Self-Organization in Nucleic Acids and Proteins
    • Wong, G. C. L.; Pollack, L. Electrostatics of Strongly Charged Biological Polymers: Ion-Mediated Interactions and Self-Organization in Nucleic Acids and Proteins Annu. Rev. Phys. Chem. 2010, 61, 171-189
    • (2010) Annu. Rev. Phys. Chem. , vol.61 , pp. 171-189
    • Wong, G.C.L.1    Pollack, L.2
  • 26
    • 0029882780 scopus 로고    scopus 로고
    • Measurement of Intercolumnar Forces between Parallel Guanosine Four-Stranded Helices
    • Mariani, P.; Saturni, L. Measurement of Intercolumnar Forces between Parallel Guanosine Four-Stranded Helices Biophys. J. 1996, 70, 2867-2874
    • (1996) Biophys. J. , vol.70 , pp. 2867-2874
    • Mariani, P.1    Saturni, L.2
  • 27
    • 34547432557 scopus 로고    scopus 로고
    • Inter-DNA Attraction Mediated by Divalent Counterions
    • Qiu, X.; Andresen, K.; Kwok, L. W. Inter-DNA Attraction Mediated by Divalent Counterions Phys. Rev. Lett. 2007, 99, 038104
    • (2007) Phys. Rev. Lett. , vol.99 , pp. 038104
    • Qiu, X.1    Andresen, K.2    Kwok, L.W.3
  • 28
    • 57149093621 scopus 로고    scopus 로고
    • Abrupt Transition from a Free, Repulsive to a Condensed, Attractive DNA Phase, Induced by Multivalent Polyamine Cations
    • Abrupt Transition from a Free, Repulsive to a Condensed, Attractive DNA Phase, Induced by Multivalent Polyamine Cations. Phys. Rev. Lett. 2008, 101, 228101-228104.
    • (2008) Phys. Rev. Lett. , vol.101 , pp. 228101-228104
  • 29
    • 12844260994 scopus 로고    scopus 로고
    • Probing Counterion Modulated Repulsion and Attraction between Nucleic Acid Duplexes in Solution
    • Bai, Y.; Das, R.; Millett, I. S. Probing Counterion Modulated Repulsion and Attraction between Nucleic Acid Duplexes in Solution Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 1035-1040
    • (2005) Proc. Natl. Acad. Sci. U.S.A. , vol.102 , pp. 1035-1040
    • Bai, Y.1    Das, R.2    Millett, I.S.3
  • 30
    • 11244331520 scopus 로고    scopus 로고
    • Effect of Mono- and Multivalent Salts on Angle-Dependent Attractions between Charged Rods
    • Lee, K.; Borukhov, I.; Liu, A. J. Effect of Mono- and Multivalent Salts on Angle-Dependent Attractions Between Charged Rods Phys. Rev. Lett. 2004, 93, 128101-128104
    • (2004) Phys. Rev. Lett. , vol.93 , pp. 128101-128104
    • Lee, K.1    Borukhov, I.2    Liu, A.J.3
  • 31
    • 70349786532 scopus 로고    scopus 로고
    • Metal Ion Dependence of Cooperative Collapse Transitions in RNA
    • Moghaddam, S.; Caliskan, G.; Thirumalai, D. Metal Ion Dependence of Cooperative Collapse Transitions in RNA J. Mol. Biol. 2009, 393, 753-764
    • (2009) J. Mol. Biol. , vol.393 , pp. 753-764
    • Moghaddam, S.1    Caliskan, G.2    Thirumalai, D.3
  • 32
    • 45849137851 scopus 로고    scopus 로고
    • Attractive Forces between Cation Condensed DNA Double Helices
    • Todd, B. A.; Parsegian, V.; Shirahata, A. Attractive Forces between Cation Condensed DNA Double Helices Biophys. J. 2008, 94, 4775-4782
    • (2008) Biophys. J. , vol.94 , pp. 4775-4782
    • Todd, B.A.1    Parsegian, V.2    Shirahata, A.3
  • 33
    • 78049323212 scopus 로고    scopus 로고
    • Cation Charge Dependence of the Forces Driving DNA Assembly
    • DeRouchey, J.; Parsegian, V.; Rau, D. C. Cation Charge Dependence of the Forces Driving DNA Assembly Biophys. J. 2010, 99, 2608-2615
    • (2010) Biophys. J. , vol.99 , pp. 2608-2615
    • Derouchey, J.1    Parsegian, V.2    Rau, D.C.3
  • 34
    • 78651293238 scopus 로고    scopus 로고
    • Salt-Dependent DNA-DNA Spacings in Intact Bacteriophage Reflect Relative Importance of DNA Self-Repulsion and Bending Energies
    • Qiu, X.; Rau, D. C.; Parsegian, V. Salt-Dependent DNA-DNA Spacings in Intact Bacteriophage Reflect Relative Importance of DNA Self-Repulsion and Bending Energies Phys. Rev. Lett. 2011, 106, 028102-028105
    • (2011) Phys. Rev. Lett. , vol.106 , pp. 028102-028105
    • Qiu, X.1    Rau, D.C.2    Parsegian, V.3
  • 35
    • 78650751760 scopus 로고    scopus 로고
    • Divalent Counterion-Induced Condensation of Triple-Strand DNA
    • Qiu, X..; Rau, D. C.; Parsegian, V. Divalent Counterion-Induced Condensation of Triple-Strand DNA Proc. Natl. Acad. Sci. U.S.A. 2010, 107, 21482-21486
    • (2010) Proc. Natl. Acad. Sci. U.S.A. , vol.107 , pp. 21482-21486
    • Qiu, X.1    Rau, D.C.2    Parsegian, V.3
  • 36
    • 82955225186 scopus 로고    scopus 로고
    • Quantitative Analysis of the Ion-Dependent Folding Stability of DNA Triplexes
    • Chen, G.; Chen, S. Quantitative Analysis of the Ion-Dependent Folding Stability of DNA Triplexes Phys. Biol. 2011, 8, 066006
    • (2011) Phys. Biol. , vol.8 , pp. 066006
    • Chen, G.1    Chen, S.2
  • 37
    • 79957462720 scopus 로고    scopus 로고
    • Electrostatic Interactions in Biological DNA-Related Systems
    • Cherstvy, A. G. Electrostatic Interactions in Biological DNA-Related Systems Phys. Chem. Chem. Phys. 2011, 13, 9942-9968
    • (2011) Phys. Chem. Chem. Phys. , vol.13 , pp. 9942-9968
    • Cherstvy, A.G.1
  • 38
    • 84857311171 scopus 로고    scopus 로고
    • RNA and Its Ionic Cloud: Solution Scattering Experiments and Atomically Detailed Simulations
    • Kirmizialtin, S.; Pabit, S.; Meisburger, S.; Pollack, L.; Elber, R. RNA and Its Ionic Cloud: Solution Scattering Experiments and Atomically Detailed Simulations Biophys. J. 2012, 102, 819-828
    • (2012) Biophys. J. , vol.102 , pp. 819-828
    • Kirmizialtin, S.1    Pabit, S.2    Meisburger, S.3    Pollack, L.4    Elber, R.5
  • 39
    • 0035971738 scopus 로고    scopus 로고
    • A Smooth Permittivity Function for Poisson-Boltzmann Solvation Methods
    • Grant, J. A.; Pickup, B. T.; Nicholls, A. A Smooth Permittivity Function for Poisson-Boltzmann Solvation Methods J. Comput. Chem. 2001, 22, 608-640
    • (2001) J. Comput. Chem. , vol.22 , pp. 608-640
    • Grant, J.A.1    Pickup, B.T.2    Nicholls, A.3
  • 40
    • 17044392602 scopus 로고    scopus 로고
    • Improving Implicit Solvent Simulations: A Poisson-Centric View
    • Baker, N. A. Improving Implicit Solvent Simulations: a Poisson-Centric View Curr. Opin. Struct. Biol. 2005, 15, 137-143
    • (2005) Curr. Opin. Struct. Biol. , vol.15 , pp. 137-143
    • Baker, N.A.1
  • 41
    • 16244384381 scopus 로고    scopus 로고
    • Electrostatic Correlations and Fluctuations for Ion Binding to a Finite Length Polyelectrolyte
    • Tan, Z.; Chen, S. Electrostatic Correlations and Fluctuations for Ion Binding to a Finite Length Polyelectrolyte J. Chem. Phys. 2005, 122, 044903
    • (2005) J. Chem. Phys. , vol.122 , pp. 044903
    • Tan, Z.1    Chen, S.2
  • 42
    • 84862226672 scopus 로고    scopus 로고
    • Predicting Ion-Nucleic Acid Interactions by Energy Landscape-Guided Sampling
    • He, Z.; Chen, S. Predicting Ion-Nucleic Acid Interactions by Energy Landscape-Guided Sampling J. Chem. Theory Comput. 2012, 8, 2095-2101
    • (2012) J. Chem. Theory Comput. , vol.8 , pp. 2095-2101
    • He, Z.1    Chen, S.2
  • 43
    • 0242396923 scopus 로고    scopus 로고
    • 3DNA: A Software Pckage for the Analysis, Rebuilding and Visualization of Three-Dimensional Nucleic Acid Structures
    • Lu, X.; Olson, W. 3DNA: a Software Pckage for the Analysis, Rebuilding and Visualization of Three-Dimensional Nucleic Acid Structures Nucleic Acids Res. 2003, 31, 5108
    • (2003) Nucleic Acids Res. , vol.31 , pp. 5108
    • Lu, X.1    Olson, W.2
  • 44
    • 0344778061 scopus 로고
    • Semianalytical Treatment of Solvation for Molecular Mechanics and Dynamics
    • Still, W.; Tempczyk, A.; Hawley, R.; Hendrickson, H. Semianalytical Treatment of Solvation for Molecular Mechanics and Dynamics J. Am. Chem. Soc. 1990, 112, 6127-6129
    • (1990) J. Am. Chem. Soc. , vol.112 , pp. 6127-6129
    • Still, W.1    Tempczyk, A.2    Hawley, R.3    Hendrickson, H.4
  • 45
    • 0033654297 scopus 로고    scopus 로고
    • Generalized Born Models of Macromolecular Solvation Effects
    • Bashford, D.; Case, A. A. Generalized Born Models of Macromolecular Solvation Effects Annu. Rev. Phys. Chem. 2000, 51, 129
    • (2000) Annu. Rev. Phys. Chem. , vol.51 , pp. 129
    • Bashford, D.1    Case, A.A.2
  • 46
    • 0000741414 scopus 로고    scopus 로고
    • A Modification of the Generalized Born Theory for Improved Estimates of Solvation Energies and PK Shifts
    • Jayaram, B.; Liu, Y.; Beveridge, D. L. A Modification of the Generalized Born Theory for Improved Estimates of Solvation Energies and PK Shifts J. Chem. Phys. 1998, 109, 1465
    • (1998) J. Chem. Phys. , vol.109 , pp. 1465
    • Jayaram, B.1    Liu, Y.2    Beveridge, D.L.3
  • 47
    • 0000831520 scopus 로고
    • Solvation Free Energies Estimated from Macroscopic Continuum Theory: An Accuracy Assessment
    • Simonson, T.; Brunger, A. T. Solvation Free Energies Estimated from Macroscopic Continuum Theory: An Accuracy Assessment J. Phys. Chem. 1994, 98, 4683-4694
    • (1994) J. Phys. Chem. , vol.98 , pp. 4683-4694
    • Simonson, T.1    Brunger, A.T.2
  • 48
    • 0042208326 scopus 로고    scopus 로고
    • On the Nonpolar Hydration Free Energy of Proteins: Surface Area and Continuum Solvent Models for the Solute-Solvent Interaction Energy
    • Levy, R.; Zhang, L.; Gallicchio, E. On the Nonpolar Hydration Free Energy of Proteins: Surface Area and Continuum Solvent Models for the Solute-Solvent Interaction Energy J. Am. Chem. Soc. 2003, 125, 9523
    • (2003) J. Am. Chem. Soc. , vol.125 , pp. 9523
    • Levy, R.1    Zhang, L.2    Gallicchio, E.3
  • 49
    • 1942456697 scopus 로고    scopus 로고
    • Recent Advances in the Development and Application of Implicit Solvent Models in Biomolecule Simulations
    • Feig, M.; Brooks, C. Recent Advances in the Development and Application of Implicit Solvent Models in Biomolecule Simulations Curr. Opin. Struct. Biol. 2004, 14, 217-224
    • (2004) Curr. Opin. Struct. Biol. , vol.14 , pp. 217-224
    • Feig, M.1    Brooks, C.2
  • 50
    • 0035957434 scopus 로고    scopus 로고
    • Free Energy Reconstruction from Nonequilibrium Single-Molecule Pulling Experiments
    • Raschke, T. M.; Tsai, J.; Levitt, M. Free Energy Reconstruction From Nonequilibrium Single-Molecule Pulling Experiments Proc. Natl. Acad. Sci. U.S.A. 2001, 98, 3965
    • (2001) Proc. Natl. Acad. Sci. U.S.A. , vol.98 , pp. 3965
    • Raschke, T.M.1    Tsai, J.2    Levitt, M.3
  • 51
    • 0002636134 scopus 로고
    • Pairwise Solute Descreening of Solute Charges from a Dielectric Medium
    • Hawkins, G.; Cramer, C.; Truhlar, D. Pairwise Solute Descreening of Solute Charges from a Dielectric Medium Chem. Phys. Lett. 1995, 246, 122-129
    • (1995) Chem. Phys. Lett. , vol.246 , pp. 122-129
    • Hawkins, G.1    Cramer, C.2    Truhlar, D.3
  • 52
    • 2442562756 scopus 로고    scopus 로고
    • Pairwise GB/SA Scoring Function for Structure-Based Drug Design
    • Liu, H.; Kuntz, I.; Zou, X. Pairwise GB/SA Scoring Function for Structure-Based Drug Design J. Phys. Chem. B 2004, 108, 5453-5462
    • (2004) J. Phys. Chem. B , vol.108 , pp. 5453-5462
    • Liu, H.1    Kuntz, I.2    Zou, X.3
  • 53
    • 1442330396 scopus 로고    scopus 로고
    • AGBNP, An Analytic Implicit Solvent Model Suitable for Molecular Dynamics Simulations and High-Resolution Modeling
    • Gallicchio, E.; Levy, R. M. AGBNP, An Analytic Implicit Solvent Model Suitable for Molecular Dynamics Simulations and High-Resolution Modeling J. Comput. Chem. 2004, 25, 479-499
    • (2004) J. Comput. Chem. , vol.25 , pp. 479-499
    • Gallicchio, E.1    Levy, R.M.2
  • 54
    • 34047193981 scopus 로고    scopus 로고
    • GBr6: A Parameterization-Free, Accurate, Analytical Gneralized Born Method
    • Tjong, H.; Zhou, H. GBr6: A Parameterization-Free, Accurate, Analytical Gneralized Born Method J. Phys. Chem. B 2007, 111, 3055-3061
    • (2007) J. Phys. Chem. B , vol.111 , pp. 3055-3061
    • Tjong, H.1    Zhou, H.2
  • 55
    • 0031248940 scopus 로고    scopus 로고
    • Continuum Electrostatic Energies of Macromolecules in Aqueous Solutions
    • Scarsi, M.; Apostolakis, J.; Caflisch, A. Continuum Electrostatic Energies of Macromolecules in Aqueous Solutions J. Phys. Chem. A 1997, 101, 8098-8106
    • (1997) J. Phys. Chem. A , vol.101 , pp. 8098-8106
    • Scarsi, M.1    Apostolakis, J.2    Caflisch, A.3
  • 56
    • 0001246294 scopus 로고    scopus 로고
    • Generalized Born Model Based on a Surface Integral Formulation
    • Ghosh, A.; Rapp, C.; Friesner, R. Generalized Born Model Based on a Surface Integral Formulation J. Phys. Chem. B 1998, 102, 10983-10990
    • (1998) J. Phys. Chem. B , vol.102 , pp. 10983-10990
    • Ghosh, A.1    Rapp, C.2    Friesner, R.3
  • 58
    • 19644373355 scopus 로고    scopus 로고
    • New Born Radii Deriving Method for Generalized Born Model
    • Zhang, W.; Hou, T.; Xu, X. New Born Radii Deriving Method for Generalized Born Model J. Chem. Inf. Model. 2005, 45, 88-93
    • (2005) J. Chem. Inf. Model. , vol.45 , pp. 88-93
    • Zhang, W.1    Hou, T.2    Xu, X.3
  • 59
    • 49349094023 scopus 로고    scopus 로고
    • 2 Solutions: Ion Size, Interionic Correlation, and Solvent Dielectric Saturation Effect
    • 2 Solutions: Ion Size, Interionic Correlation, and Solvent Dielectric Saturation Effect J. Phys. Chem. B 2008, 112, 8955-8965
    • (2008) J. Phys. Chem. B , vol.112 , pp. 8955-8965
    • Gavryushov, S.1
  • 60
    • 65249149099 scopus 로고    scopus 로고
    • 2 Solutions
    • 2 Solutions. J. Phys. Chem. B 2009, 113, 2160-2169.
    • (2009) J. Phys. Chem. B , vol.113 , pp. 2160-2169
  • 61
    • 84857256519 scopus 로고    scopus 로고
    • The Ionic Atmosphere around A-RNA: Poisson-Boltzmann and Molecular Dynamics Simulations
    • Kirmizialtin, S.; Silalahi, A.; Elber, R.; Fenley, M. The Ionic Atmosphere around A-RNA: Poisson-Boltzmann and Molecular Dynamics Simulations Biophys. J. 2012, 22, 829-838
    • (2012) Biophys. J. , vol.22 , pp. 829-838
    • Kirmizialtin, S.1    Silalahi, A.2    Elber, R.3    Fenley, M.4
  • 62
    • 51949119253 scopus 로고    scopus 로고
    • Critical Assessment of Nucleic Acid Electrostatics via Experimental and Computational Investigation of an Unfolded State Ensemble
    • Bai, Y.; Chu, Y. b.; Lipfert, J.; Pande, V.; Hershlag, D.; Doniach, S. Critical Assessment of Nucleic Acid Electrostatics via Experimental and Computational Investigation of an Unfolded State Ensemble J. Am. Chem. Soc. 2008, 130, 12334-12341
    • (2008) J. Am. Chem. Soc. , vol.130 , pp. 12334-12341
    • Bai, Y.1    Chu, Y.B.2    Lipfert, J.3    Pande, V.4    Hershlag, D.5    Doniach, S.6
  • 63
    • 84865356812 scopus 로고    scopus 로고
    • Ion-mediated RNA Structural Collapse: Effect of Spatial Confinement
    • Tan, Z.; Chen, S. Ion-mediated RNA Structural Collapse: Effect of Spatial Confinement Biophys. J. 2012, 103, 827-836
    • (2012) Biophys. J. , vol.103 , pp. 827-836
    • Tan, Z.1    Chen, S.2


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