DNA condensation by multivalent cations

Biopolymers

Volumn 44, Issue 3, 1997, Pages 269-282

  Bloomfield, Victor A ^a  

^a UNIVERSITY OF MINNESOTA   (United States)

Author keywords

DNA condensation; DNA kinetics; DNA morphology; DNA reversibility; Multivalent cations; Statistical mechanics; Torsoids

Indexed keywords

AGENTS; CONDENSATION; FREE ENERGY; HYDRATION; IONS; MOLECULAR STRUCTURE; REACTION KINETICS; STATISTICAL MECHANICS;

DNA CONDENSATION; DNA KINETICS; DNA MORPHOLOGY; DNA REVERSIBILITY; MULTIVALENT CATIONS; TORSOIDS;

DNA;

CATION; DNA; DNA BASE;

BASE PAIRING; DNA CONFORMATION; DNA HELIX; DNA STRUCTURE; ENTROPY; HYDRATION; MOLECULAR INTERACTION; MOLECULAR WEIGHT; POLYMERIZATION; REVIEW; THERMODYNAMICS;

CATIONS; DNA; ELECTROSTATICS; KINETICS; MODELS, CHEMICAL; NUCLEIC ACID CONFORMATION; THERMODYNAMICS; WATER;

EID: 0031447208     PISSN: 00063525     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1097-0282(1997)44:3<269::AID-BIP6>3.0.CO;2-T     Document Type: Article

References (105)

1. Guo, P., Peterson, C. & Anderson, D. (1987) J. Mol. Biol. 197, 229-236.
2. Morita, M., Tasaka, M. & Fujisawa, H. (1993) Virology 193, 748-752.
3. Gosule, L. C. & Schellman, J. A. (1976) Nature 259, 333-335.
4. Klimenko, S. M., Tikkchonenko, T. I. & Andreev, V. M. (1967) J. Mol. Biol. 23, 523-533.
5. Schellman, J. A. & Parthasarathy, N. (1984) J. Mol. Biol. 175, 313-329.
6. Bloomfield, V. A. (1991) Biopolymers 31, 1471-1481.
7. Bloomfield, V. A., Crothers, D. M. & Tinoco, I., Jr. (1988) Nucleic Acids: Structures, Properties and Functions, University Science Press, Mill Valley, CA.
8. Chattoraj, D. K., Gosule, L. C. & Schellman, J. A. (1978) J. Mol. Biol. 121, 327-337.
9. Widom, J. & Baldwin, R. L. (1980) J. Mol. Biol. 144, 431-453.
10. Widom, J. & Baldwin, R. L. (1983) Biopolymers 22, 1595-1620.
11. Laemmli, U. K. (1975) Proc. Natl. Acad. Sci. USA 72, 4288-4292.
12. Hsiang, M. W. & Cole, R. D. (1977) Proc. Natl. Acad. Sci. USA 74, 4852-4856.
13. Garcia-Ramírez, M. & Subirana, J. (1994) Biopolymers 34, 285-292.
14. Ma, C. & Bloomfield, V. A. (1994) Biophys. J. 67, 1678-1681.
15. Wilson, R. W. & Bloomfield, V. A. (1979) Biochemistry 18, 2192-2196.
16. Votavová, H., Kucerová, D., Felsberg, J. & Sponar, J. (1986) J. Biomol. Struct. Dynam. 4, 477-489.
17. Arscott, P. G., Ma, C., Wenner, J. & Bloomfield, V. A. (1995) Biopolymers 36, 345-365.
18. Lang, D. (1973) J. Mol. Biol. 78, 247-254.
19. Eickbush, T. H. & Moudrianakis, E. N. (1976) Cell 13, 295-306.
20. Lerman, L. S. (1971) Proc. Natl. Acad. Sci. USA 68, 1886-1890.
21. Laemmli, U. K., Paulson, J. R. & Hitchins, V. (1974) J. Supramol. Struct. 2, 276-301.
22. Duzgunes, N. & Feigner, P. L. (1993) Methods Enzymol. 221, 303-306.
23. Huang, L., Klibanov, A. L., Mori, A. & Gao, X. (1993) J. Liposome Res. 3, 505-515.
24. Bloomfield, V. A. (1996) Curr. Opinion Struct. Biol. 6, 334-341.
25. Lasic, D. D. (1997) Liposomes in Gene Delivery, CRC Press, Boca Raton, FL.
26. Arscott, P. G., Li, A.-Z. & Bloomfield, V. A. (1990) Biopolymers 30, 619-630.
27. Marx, K. A. & Ruben, G. C. (1983) Nucleic Acids Res. 11, 1839-1854.
28. Lang, D., Taylor, T. N., Dobyan, D. C. & Gray, D. M. (1976) J. Mol. Biol. 106, 97-107.
29. Plum, G. E., Arscott, P. G. & Bloomfield, V. A. (1990) Biopolymers 30, 631-643.
30. He, S. (1992) Kinetics of DNA Condensation by Hexaammine Cobalt(III), University of Minnesota, St. Paul, pp. 1-228.
31. Porschke, D. (1984) Biochemistry 23, 4821-4828.
32. Lifshitz, I. M., Grosberg, A. Y. & Khokhlov, A. R. (1978) Rev. Mod. Phys. 50, 683-713.
33. Grosberg, A. Y. & Kuznetsov, D. V. (1992) Macromolecules 25, 1970-1979.
34. Grosberg, A. Y. & Kuznetsov, D. V. (1992) Macromolecules 25, 1980-1990.
35. Grosberg, A. Y. & Kuznetsov, D. V. (1992) Macromolecules 25, 1991-1995.
36. Grosberg, A. Y. & Kuznetsov, D. V. (1992) Macromolecules 25, 1996-2003.
37. Grosberg, A. Y. & Kuznetsov, D. V. (1993) Macromolecules 26, 4249-4251.
38. Grosberg, A. Y. & Khokhlov, A. R. (1994) Statistical Physics of Macromolecules, American Institute of Physics, New York, pp. 1-350.
39. Post, C. B. & Zimm, B. H. (1979) Biopolymers 18, 1487-1502.
40. Post, C. B. & Zimm, B. H. (1982) Biopolymers 21, 2123-2137.
41. Post, C. B. & Zimm, B. H. (1982) Biopolymers 21, 2139-2160.
42. Yoshikawa, K., Kidoaki, S., Takahashi, M., Vasilevskaya, V. V. & Khokhlov, A. R. (1996) Berichte der Bunsen Gesellschaft fur Physikalische Chemie 100, 876-880.
43. Yoshikawa, K., Takahashi, M., Vasilevskaya, V. V. & Khokhlov, A. R. (1996) Phys. Rev. Lett. 76, 3029-3031.
44. Grosberg, A. Y. & Zhestkov, A. V. (1986) J. Biomol. Struct. Dynam. 3, 859-872.
45. Vasilevskaya, V. V., Khokhlov, A. R., Kidoaki, S. & Yoshikawa, K. (1997) Biopolymers 41, 51-60.
46. Ubbink, J. & Odijk, T. (1995) Biophys. J. 68, 54-61.
47. Ubbink, J. & Odijk, T. (1996) Europhys. Lett. 33, 353-358.
48. Grosberg, A. Y. & Zhestkov, A. V. (1985) J. Biomol. Struct. Dynam. 3, 515-520.
49. Baumann, C. G., Smith, S. B., Bustamante, C. & Bloomfield, V. A. (1997) in preparation.
50. Leikin, S., Rau, D. C. & Parsegian, V. A. (1991) Phys. Rev. A 44, 5272-5278.
51. Rau, D. C. & Parsegian, V. A. (1992) Biophys. J. 61, 246-259.
52. Rau, D. C. & Parsegian, V. A. (1992) Biophys. J. 61, 260-271.
53. Parsegian, A. V., Rand, R. P., Fuller, N. L. & Rau, D. C. (1986) Methods Enzymol. 127, 400-416.
54. Manning, G. S. (1978) Quart. Rev. Biophys. 11, 179-246.
55. Ma, C. & Bloomfield, V. A. (1995) Biopolymers 35, 211-216.
56. Bloomfield, V. A., Ma, C. & Arscott, P. G., (1994) in Macro-Ion Characterization: From Dilute SoIutions to Complex Fluids, Schmitz, K. S., Ed., Amer-ican Chemical Society, Washington, DC, pp. 195-209.
57. Flock, S., Labarbe, R. & Houssier, C. (1995) J. Biomol. Struct. Dynam. 13, 87-102.
58. Flock, S., Labarbe, R. & Houssier, C. (1996) Biophys. J. 70, 1456-1465.
59. Benbasat, J. A. (1984) Biochemistry 23, 3609-3619.
60. Plum, G. E. & Bloomfield, V. A. (1988) Biopolymers 27, 1045-1051.
61. Yen, W. S. & Ware, B. R. (1982) Biophys. J. 37, 291a.
62. Riemer, S. C. & Bloomfield, V. A. (1978) Biopolymers 17, 785-794.
63. Reich, Z., Ghirlando, R. & Minsky, A. (1992) J. Biomol. Struct. Dynam. 9, 1097-1109.
64. Marquet, R. & Houssier, C. (1991) J. Biomol. Struct. Dynam. 9, 159-167.
65. Oosawa, F. (1968) Biopolymers 6, 1633-1647.
66. Oosawa, F. (1971) Polyelectrolytes, Marcel Dekker, New York.
67. Bloomfield, V. A., Wilson, R. W. & Rau, D. C. (1980) Biophys. Chem. 11, 339-343.
68. Guldbrand, L., Nilsson, L. G. & Nordenskiöld, L. (1986) J. Chem. Phys. 85, 6686-6698.
69. Nilsson, L. G., Guldbrand, L. & Nordenskjöld, L. (1991) Mol. Phys. 72, 177-192.
70. Lyubartsev, A. P. & Nordenskiöld, L. (1995) J. Phys. Chem. 99, 10373-10382.
71. Ray, J. & Manning, G. S. (1994) Langmuir 10, 2450-2461.
72. Wissenburg, P., Odijk, T., Cirkel, P. & Mandel, M. (1994) Macromolecules 27, 306-308.
73. Wissenburg, P., Odijk, T., Cirkel, P. & Mandel, M. (1995) Macromolecules 28, 2315-2328.
74. Leikin, S., Parsegian, V. A., Rau, D. C. & Rand, R. P. (1993) Ann. Rev. Phys. Chem. 44, 369-395.
75. Rau, D. C., Lee, B. K. & Parsegian, V. A. (1984) Proc. Natl. Acad. Sci. USA 81, 2621-2625.
76. Reich, Z., Wachtel, E. J. & Minsky, A. (1995) J. Biol. Chem. 270, 7045-7046.
77. Podgornik, R., Rau, D. C. & Parsegian, V. A. (1994) Biophys. J. 66, 962-971.
78. Podgornik, R., Rau, D. C. & Parsegian, V. A. (1989) Macromolecules 22, 1780-1786.
79. Odijk, T. (1993) Biophys. Chem. 46, 69-75.
80. Odijk, T. (1993) Macromolecules 26, 6897-6902.
81. Wemmer, D. E., Srivenugopal, K. S., Reid, B. R. & Morris, D. R. (1985) J. Mol. Biol. 185, 457-459.
82. Ross, P. D. & Shapiro, J. T. (1974) Biopolymers 13, 415-416.
83. Gosule, L. C. & Schellman, J. A. (1978) J. Mol. Biol. 121, 311-326.
84. Liquori, A. M., et al. (1967) J. Mol. Biol. 24, 113-122.
85. Suwalsky, M., Traub, W., Shmueli, U. & Subirana, J. A. (1969) J. Mol. Biol. 42, 363-373.
86. Drew, H. R. & Dickerson, R. E. (1981) J., Mol. Biol. 151, 535-556.
87. Feuerstein, B. G., Pattabiraman, N. & Marton, L. J. (1986) Proc. Natl. Acad. Sci. USA 83, 5948-5952.
88. Feuerstein, B. G., Pattabiraman, N. & Marton, L. J. (1990) Nucleic Acids Res. 18, 1271-1282.
89. Braunlin, W. H. & Xu, Q. (1992) Biopolymers 32, 1703-1711.
90. Xu, Q., Shoemaker, R. K. & Braunlin, W. H. (1993) Biophys. J. 65, 1039-1049.
91. Xu, Q., Jampani, S. R. B. & Braunlin, W. H. (1993) Biochemistry 32, 11754-11760.
92. Porschke, D. (1986) J. Biomol. Struct. Dynam. 4, 373-389.
93. Marquet, R., Houssier, C. & Fredericq, E. (1985) Biochim. Biophys. Acta 825, 365-374.
94. Marquet, R., Wyart, A. & Houssier, C. (1987) Biochim. Biophys. Acta 909, 165-172.
95. Marquet, R. & Houssier, C. (1988) J. Biomol. Struct. Dynam. 6, 235-246.
96. Wang, M. D., Yin, H., Landick, R., Gelles, J. & Block, S. M. (1997) Biophys. J. 72, 1335-1346.
97. Baumann, C. G., Smith, S. B., Bloomfield, V. A. & Bustamante, C. (1997) Proc. Natl. Acad. Sci. USA 94, 6185-6190.
98. Trifonov, E. N., Tan, R. K.-Z. & Harvey, S. C. (1987) in Structure and Expression Olson, W. K., Sarma, M. H., Sarma, R. H. & Sundaralingam, M., Eds., Adenine Press, Schenectady, NY, pp. 243-253.
99. Schellman, J. A. & Harvey, S. C. (1995) Biophys. Chem. 55, 95-114.
100. Manning, G. S., Ebralidse, K. K., Mirzabekov, A. D. & Rich, A. (1989) J. Biomol. Struct. Dynam. 6, 877-889.
101. Strauss, J. K. & Maher, L. J., III (1994) Science 266, 1829-1834.
102. Strauss, J. K., Roberts, C., Nelson, M. G., Switzer, C. & Maher, L. J., III (1996) Proc. Natl. Acad. Sci. USA 93, 9515-9520.
103. Rouzina, I. & Bloomfield, V. A. (1996) J. Phys. Chem. 100, 9977-9989.
104. Rouzina, I. & Bloomfield, V. A. (1998) Biophys. J., in press.
105. Levin-Zaidman, S., Reich, Z., Wachtel, E. J. & Minsky, A. (1996) Biochemistry 35, 2985-2991.