메뉴 건너뛰기




Volumn 8, Issue 6, 2013, Pages

Selective Methylation of CpGs at Regulatory Binding Sites Controls NNAT Expression in Wilms Tumors

Author keywords

[No Author keywords available]

Indexed keywords

BLADDER CANCER ASSOCIATED PROTEIN; DNA; NEURONATIN; ONCOPROTEIN; REGULATOR PROTEIN; SOMATOMEDIN B; TRANSCRIPTION FACTOR CTCF; UNCLASSIFIED DRUG;

EID: 84879354172     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0067605     Document Type: Article
Times cited : (19)

References (28)
  • 1
    • 33645460549 scopus 로고    scopus 로고
    • How imprinting centres work
    • doi:10.1159/000090818
    • Lewis A, Reik W, (2006) How imprinting centres work. Cytogenet Genome Res 113: 81-89 doi:10.1159/000090818.
    • (2006) Cytogenet Genome Res , vol.113 , pp. 81-89
    • Lewis, A.1    Reik, W.2
  • 2
    • 79551575384 scopus 로고    scopus 로고
    • Altered expression of imprinted genes in Wilms tumors
    • doi:10.3892/or.2010.1113
    • Hubertus J, Lacher M, Rottenkolber M, Müller-Höcker J, Berger M, et al. (2011) Altered expression of imprinted genes in Wilms tumors. Oncol Rep 25: 817-823 doi:10.3892/or.2010.1113.
    • (2011) Oncol Rep , vol.25 , pp. 817-823
    • Hubertus, J.1    Lacher, M.2    Rottenkolber, M.3    Müller-Höcker, J.4    Berger, M.5
  • 3
    • 0037339969 scopus 로고    scopus 로고
    • Loss of imprinting of IGF2 and H19 in osteosarcoma is accompanied by reciprocal methylation changes of a CTCF-binding site
    • Ulaner GA, Vu TH, Li T, Hu J-F, Yao X-M, et al. (2003) Loss of imprinting of IGF2 and H19 in osteosarcoma is accompanied by reciprocal methylation changes of a CTCF-binding site. Hum Mol Genet 12: 535-549.
    • (2003) Hum Mol Genet , vol.12 , pp. 535-549
    • Ulaner, G.A.1    Vu, T.H.2    Li, T.3    Hu, J.-F.4    Yao, X.-M.5
  • 4
    • 0035393429 scopus 로고    scopus 로고
    • Loss of imprinting of insulin-like growth factor-II in Wilms' tumor commonly involves altered methylation but not mutations of CTCF or its binding site
    • Cui H, Niemitz EL, Ravenel JD, Onyango P, Brandenburg SA, et al. (2001) Loss of imprinting of insulin-like growth factor-II in Wilms' tumor commonly involves altered methylation but not mutations of CTCF or its binding site. Cancer Research 61: 4947-4950.
    • (2001) Cancer Research , vol.61 , pp. 4947-4950
    • Cui, H.1    Niemitz, E.L.2    Ravenel, J.D.3    Onyango, P.4    Brandenburg, S.A.5
  • 5
    • 18944384938 scopus 로고    scopus 로고
    • Epigenetic alteration at the DLK1-GTL2 imprinted domain in human neoplasia: analysis of neuroblastoma, phaeochromocytoma and Wilms' tumour
    • doi:10.1038/sj.bjc.6602478
    • Astuti D, Latif F, Wagner K, Gentle D, Cooper WN, et al. (2005) Epigenetic alteration at the DLK1-GTL2 imprinted domain in human neoplasia: analysis of neuroblastoma, phaeochromocytoma and Wilms' tumour. Br J Cancer 92: 1574-1580 doi:10.1038/sj.bjc.6602478.
    • (2005) Br J Cancer , vol.92 , pp. 1574-1580
    • Astuti, D.1    Latif, F.2    Wagner, K.3    Gentle, D.4    Cooper, W.N.5
  • 6
    • 84863852867 scopus 로고    scopus 로고
    • Wilms Tumor
    • doi:10.1016/j.yapd.2012.04.001
    • Davidoff AM, (2012) Wilms Tumor. Advances in Pediatrics 59: 247-267 doi:10.1016/j.yapd.2012.04.001.
    • (2012) Advances in Pediatrics , vol.59 , pp. 247-267
    • Davidoff, A.M.1
  • 7
    • 0036087979 scopus 로고    scopus 로고
    • Gene expression in Wilms' tumor mimics the earliest committed stage in the metanephric mesenchymal-epithelial transition
    • doi:10.1016/S0002-9440(10)61166-2
    • Li C-M, Guo M, Borczuk A, Powell CA, Wei M, et al. (2002) Gene expression in Wilms' tumor mimics the earliest committed stage in the metanephric mesenchymal-epithelial transition. Am J Pathol 160: 2181-2190 doi:10.1016/S0002-9440(10)61166-2.
    • (2002) Am J Pathol , vol.160 , pp. 2181-2190
    • Li, C.-M.1    Guo, M.2    Borczuk, A.3    Powell, C.A.4    Wei, M.5
  • 8
    • 41349121558 scopus 로고    scopus 로고
    • New prognostic markers revealed by evaluation of genes correlated with clinical parameters in Wilms tumors
    • doi:10.1002/gcc.20544
    • Wittmann S, Wunder C, Zirn B, Furtwängler R, Wegert J, et al. (2008) New prognostic markers revealed by evaluation of genes correlated with clinical parameters in Wilms tumors. Genes Chromosomes Cancer 47: 386-395 doi:10.1002/gcc.20544.
    • (2008) Genes Chromosomes Cancer , vol.47 , pp. 386-395
    • Wittmann, S.1    Wunder, C.2    Zirn, B.3    Furtwängler, R.4    Wegert, J.5
  • 9
    • 0035895208 scopus 로고    scopus 로고
    • Loss of imprinting of the insulin-like growth factor II gene occurs by biallelic methylation in a core region of H19-associated CTCF-binding sites in colorectal cancer
    • doi:10.1073/pnas.011528698
    • Nakagawa H, Chadwick RB, Peltomaki P, Plass C, Nakamura Y, et al. (2001) Loss of imprinting of the insulin-like growth factor II gene occurs by biallelic methylation in a core region of H19-associated CTCF-binding sites in colorectal cancer. Proc Natl Acad Sci USA 98: 591-596 doi:10.1073/pnas.011528698.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 591-596
    • Nakagawa, H.1    Chadwick, R.B.2    Peltomaki, P.3    Plass, C.4    Nakamura, Y.5
  • 10
    • 0033566704 scopus 로고    scopus 로고
    • Mosaic allelic insulin-like growth factor 2 expression patterns reveal a link between Wilms' tumorigenesis and epigenetic heterogeneity
    • Ohlsson R, Cui H, He L, Pfeifer S, Malmikumpu H, et al. (1999) Mosaic allelic insulin-like growth factor 2 expression patterns reveal a link between Wilms' tumorigenesis and epigenetic heterogeneity. Cancer Research 59: 3889-3892.
    • (1999) Cancer Research , vol.59 , pp. 3889-3892
    • Ohlsson, R.1    Cui, H.2    He, L.3    Pfeifer, S.4    Malmikumpu, H.5
  • 11
    • 10744230832 scopus 로고    scopus 로고
    • Epigenetic differences between Wilms' tumours in white and east-Asian children
    • doi:10.1016/S0140-6736(04)15491-3
    • Fukuzawa R, Breslow NE, Morison IM, Dwyer P, Kusafuka T, et al. (2004) Epigenetic differences between Wilms' tumours in white and east-Asian children. Lancet 363: 446-451 doi:10.1016/S0140-6736(04)15491-3.
    • (2004) Lancet , vol.363 , pp. 446-451
    • Fukuzawa, R.1    Breslow, N.E.2    Morison, I.M.3    Dwyer, P.4    Kusafuka, T.5
  • 12
    • 0029956737 scopus 로고    scopus 로고
    • Increased expression of the insulin-like growth factor-II gene in Wilms' tumor is not dependent on loss of genomic imprinting or loss of heterozygosity
    • Wang WH, Duan JX, Vu TH, Hoffman AR, (1996) Increased expression of the insulin-like growth factor-II gene in Wilms' tumor is not dependent on loss of genomic imprinting or loss of heterozygosity. J Biol Chem 271: 27863-27870.
    • (1996) J Biol Chem , vol.271 , pp. 27863-27870
    • Wang, W.H.1    Duan, J.X.2    Vu, T.H.3    Hoffman, A.R.4
  • 13
    • 0035416510 scopus 로고    scopus 로고
    • The neuronatin gene resides in a "micro-imprinted" domain on human chromosome 20q11.2
    • doi:10.1006/geno.2001.6612
    • Evans HK, Wylie AA, Murphy SK, Jirtle RL, (2001) The neuronatin gene resides in a "micro-imprinted" domain on human chromosome 20q11.2. Genomics 77: 99-104 doi:10.1006/geno.2001.6612.
    • (2001) Genomics , vol.77 , pp. 99-104
    • Evans, H.K.1    Wylie, A.A.2    Murphy, S.K.3    Jirtle, R.L.4
  • 14
    • 57649234924 scopus 로고    scopus 로고
    • Transcript- and tissue-specific imprinting of a tumour suppressor gene
    • doi:10.1093/hmg/ddn322
    • Schulz R, McCole RB, Woodfine K, Wood AJ, Chahal M, et al. (2009) Transcript- and tissue-specific imprinting of a tumour suppressor gene. Hum Mol Genet 18: 118-127 doi:10.1093/hmg/ddn322.
    • (2009) Hum Mol Genet , vol.18 , pp. 118-127
    • Schulz, R.1    McCole, R.B.2    Woodfine, K.3    Wood, A.J.4    Chahal, M.5
  • 15
    • 4744362864 scopus 로고    scopus 로고
    • Reduction of postoperative chemotherapy in children with stage I intermediate-risk and anaplastic Wilms' tumour (SIOP 93-01 trial): a randomised controlled trial
    • doi:10.1016/S0140-6736(04)17139-0
    • de Kraker J, Graf N, van Tinteren H, Pein F, Sandstedt B, et al. (2004) Reduction of postoperative chemotherapy in children with stage I intermediate-risk and anaplastic Wilms' tumour (SIOP 93-01 trial): a randomised controlled trial. Lancet 364: 1229-1235 doi:10.1016/S0140-6736(04)17139-0.
    • (2004) Lancet , vol.364 , pp. 1229-1235
    • de Kraker, J.1    Graf, N.2    van Tinteren, H.3    Pein, F.4    Sandstedt, B.5
  • 16
    • 17344392308 scopus 로고    scopus 로고
    • A new mathematical model for relative quantification in real-time RT-PCR
    • Pfaffl MW, (2001) A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Research 29: 2002-2007.
    • (2001) Nucleic Acids Research , vol.29 , pp. 2002-2007
    • Pfaffl, M.W.1
  • 17
    • 34250160167 scopus 로고    scopus 로고
    • Mechanisms regulating imprinted genes in clusters
    • doi:10.1016/j.ceb.2007.04.013
    • Edwards CA, Ferguson-Smith AC, (2007) Mechanisms regulating imprinted genes in clusters. Curr Opin Cell Biol 19: 281-289 doi:10.1016/j.ceb.2007.04.013.
    • (2007) Curr Opin Cell Biol , vol.19 , pp. 281-289
    • Edwards, C.A.1    Ferguson-Smith, A.C.2
  • 18
    • 33745728174 scopus 로고    scopus 로고
    • Multiple imprinted and stemness genes provide a link between normal and tumor progenitor cells of the developing human kidney
    • doi:10.1158/0008-5472.CAN-05-4528
    • Dekel B, Metsuyanim S, Schmidt-Ott KM, Fridman E, Jacob-Hirsch J, et al. (2006) Multiple imprinted and stemness genes provide a link between normal and tumor progenitor cells of the developing human kidney. Cancer Research 66: 6040-6049 doi:10.1158/0008-5472.CAN-05-4528.
    • (2006) Cancer Research , vol.66 , pp. 6040-6049
    • Dekel, B.1    Metsuyanim, S.2    Schmidt-Ott, K.M.3    Fridman, E.4    Jacob-Hirsch, J.5
  • 19
    • 0028803216 scopus 로고
    • Segment-specific expression of the neuronatin gene during early hindbrain development
    • doi:10.1006/dbio.1995.1261
    • Wijnholds J, Chowdhury K, Wehr R, Gruss P, (1995) Segment-specific expression of the neuronatin gene during early hindbrain development. Dev Biol 171: 73-84 doi:10.1006/dbio.1995.1261.
    • (1995) Dev Biol , vol.171 , pp. 73-84
    • Wijnholds, J.1    Chowdhury, K.2    Wehr, R.3    Gruss, P.4
  • 21
    • 79959244223 scopus 로고    scopus 로고
    • Novel cis-regulatory function in ICR-mediated imprinted repression of H19
    • doi:10.1016/j.ydbio.2011.04.036
    • Ideraabdullah FY, Abramowitz LK, Thorvaldsen JL, Krapp C, Wen SC, et al. (2011) Novel cis-regulatory function in ICR-mediated imprinted repression of H19. Dev Biol 355: 349-357 doi:10.1016/j.ydbio.2011.04.036.
    • (2011) Dev Biol , vol.355 , pp. 349-357
    • Ideraabdullah, F.Y.1    Abramowitz, L.K.2    Thorvaldsen, J.L.3    Krapp, C.4    Wen, S.C.5
  • 22
    • 33747885707 scopus 로고    scopus 로고
    • CTCF-Dependent Chromatin Insulator Is Linked to Epigenetic Remodeling
    • doi:10.1016/j.molcel.2006.08.008
    • Ishihara K, Oshimura M, Nakao M, (2006) CTCF-Dependent Chromatin Insulator Is Linked to Epigenetic Remodeling. Molecular Cell 23: 733-742 doi:10.1016/j.molcel.2006.08.008.
    • (2006) Molecular Cell , vol.23 , pp. 733-742
    • Ishihara, K.1    Oshimura, M.2    Nakao, M.3
  • 23
    • 77956913475 scopus 로고    scopus 로고
    • Aberrant expression of tenascin-c and neuronatin in malignant peripheral nerve sheath tumors
    • doi:10.1684/ejd.2010.0996
    • Dugu L, Hayashida S, Nakahara T, Xie L, Iwashita Y, et al. (2010) Aberrant expression of tenascin-c and neuronatin in malignant peripheral nerve sheath tumors. Eur J Dermatol 20: 580-584 doi:10.1684/ejd.2010.0996.
    • (2010) Eur J Dermatol , vol.20 , pp. 580-584
    • Dugu, L.1    Hayashida, S.2    Nakahara, T.3    Xie, L.4    Iwashita, Y.5
  • 24
    • 84862058362 scopus 로고    scopus 로고
    • Neuronatin in a subset of glioblastoma multiforme tumor progenitor cells is associated with increased cell proliferation and shorter patient survival
    • doi:10.1371/journal.pone.0037811
    • Xu DS, Yang C, Proescholdt M, Bründl E, Brawanski A, et al. (2012) Neuronatin in a subset of glioblastoma multiforme tumor progenitor cells is associated with increased cell proliferation and shorter patient survival. PLoS ONE 7: e37811 doi:10.1371/journal.pone.0037811.
    • (2012) PLoS ONE , vol.7
    • Xu, D.S.1    Yang, C.2    Proescholdt, M.3    Bründl, E.4    Brawanski, A.5
  • 25
    • 77956223493 scopus 로고    scopus 로고
    • Abundant expression of neuronatin in normal eccrine, apocrine and sebaceous glands and their neoplasms
    • doi:10.1111/j.1346-8138.2010.00873.x
    • Dugu L, Takahara M, Tsuji G, Iwashita Y, Liu X, et al. (2010) Abundant expression of neuronatin in normal eccrine, apocrine and sebaceous glands and their neoplasms. J Dermatol 37: 846-848 doi:10.1111/j.1346-8138.2010.00873.x.
    • (2010) J Dermatol , vol.37 , pp. 846-848
    • Dugu, L.1    Takahara, M.2    Tsuji, G.3    Iwashita, Y.4    Liu, X.5
  • 26
    • 67650457742 scopus 로고    scopus 로고
    • Loss of neuronatin expression is associated with promoter hypermethylation in pituitary adenoma
    • doi:10.1677/ERC-09-0008
    • Revill K, Dudley KJ, Clayton RN, McNicol AM, Farrell WE, (2009) Loss of neuronatin expression is associated with promoter hypermethylation in pituitary adenoma. Endocr Relat Cancer 16: 537-548 doi:10.1677/ERC-09-0008.
    • (2009) Endocr Relat Cancer , vol.16 , pp. 537-548
    • Revill, K.1    Dudley, K.J.2    Clayton, R.N.3    McNicol, A.M.4    Farrell, W.E.5
  • 27
    • 84875782946 scopus 로고    scopus 로고
    • More than insulator: multiple roles of CTCF at the H19-Igf2 imprinted domain
    • doi: 10.3389/fgene.2012.00214
    • Singh P, Lee D-H, Szabó PE (2012) More than insulator: multiple roles of CTCF at the H19-Igf2 imprinted domain. Front Gene 3. doi:10.3389/fgene.2012.00214.
    • (2012) Front Gene , vol.3
    • Singh, P.1    Lee, D.-H.2    Szabó, P.E.3
  • 28
    • 33947201809 scopus 로고    scopus 로고
    • Analysis of the Vertebrate Insulator Protein CTCF-Binding Sites in the Human Genome
    • doi:10.1016/j.cell.2006.12.048
    • Kim TH, Abdullaev ZK, Smith AD, Ching KA, Loukinov DI, et al. (2007) Analysis of the Vertebrate Insulator Protein CTCF-Binding Sites in the Human Genome. Cell 128: 1231-1245 doi:10.1016/j.cell.2006.12.048.
    • (2007) Cell , vol.128 , pp. 1231-1245
    • Kim, T.H.1    Abdullaev, Z.K.2    Smith, A.D.3    Ching, K.A.4    Loukinov, D.I.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.