-
1
-
-
80055082991
-
On the suitability of short reads of 16S rRNA for phylogeny-based analyses in environmental surveys
-
Jeraldo P, Chia N, Goldenfeld N (2011) On the suitability of short reads of 16S rRNA for phylogeny-based analyses in environmental surveys. Environ Microbiol 13: 3000-3009.
-
(2011)
Environ Microbiol
, vol.13
, pp. 3000-3009
-
-
Jeraldo, P.1
Chia, N.2
Goldenfeld, N.3
-
2
-
-
84856587704
-
Prokaryotic taxonomy in the sequencing era-the polyphasic approach revisited
-
Kämpfer P, Glaeser SP (2012) Prokaryotic taxonomy in the sequencing era-the polyphasic approach revisited. Environ Microbiol 14: 291-317.
-
(2012)
Environ Microbiol
, vol.14
, pp. 291-317
-
-
Kämpfer, P.1
Glaeser, S.P.2
-
3
-
-
3142698304
-
Improved resolution on the phylogenetic relationships among Pseudomonas by combined analysis of atpD, carA, recA and 16S rDNA
-
Hilario E, Buckley TR, Young JM (2004) Improved resolution on the phylogenetic relationships among Pseudomonas by combined analysis of atpD, carA, recA and 16S rDNA. Antonie van Leeuwenhoek 86: 51-64.
-
(2004)
Antonie Van Leeuwenhoek
, vol.86
, pp. 51-64
-
-
Hilario, E.1
Buckley, T.R.2
Young, J.M.3
-
4
-
-
84860776735
-
Pseudomonassyringae pv. actinidiae (PSA) isolates from recent bacterial canker of Kiwifruit outbreaks belong to the same genetic lineage
-
Mazzaglia A, Studholme DJ, Taratufolo MC, Cai R, Almeida NF, Goodman T, Guttman DS, Vinatzer BA, Balestra GM (2012) Pseudomonassyringae pv. actinidiae (PSA) isolates from recent bacterial canker of Kiwifruit outbreaks belong to the same genetic lineage. PLoS One 7: e36518.
-
(2012)
PLoS One
, vol.7
-
-
Mazzaglia, A.1
Studholme, D.J.2
Taratufolo, M.C.3
Cai, R.4
Almeida, N.F.5
Goodman, T.6
Guttman, D.S.7
Vinatzer, B.A.8
Balestra, G.M.9
-
5
-
-
33745132441
-
Biology of Pseudomonas stutzeri
-
Lalucat J, Bennasar A, Bosch R, Garcia-Valdés E, Palleroni NJ (2006) Biology of Pseudomonas stutzeri. Microbiol Mol Biol Rev 70: 510-547.
-
(2006)
Microbiol Mol Biol Rev
, vol.70
, pp. 510-547
-
-
Lalucat, J.1
Bennasar, A.2
Bosch, R.3
Garcia-Valdés, E.4
Palleroni, N.J.5
-
6
-
-
70449659117
-
Historical evolution and current status of the taxonomy of genus Pseudomonas
-
Peix A, Ramírez-Bahena MH, Velázquez E (2009) Historical evolution and current status of the taxonomy of genus Pseudomonas. Infect Genet Evol 9: 1132-1147.
-
(2009)
Infect Genet Evol
, vol.9
, pp. 1132-1147
-
-
Peix, A.1
Ramírez-Bahena, M.H.2
Velázquez, E.3
-
7
-
-
77954309106
-
Evaluation of genetic and functional diversity of Stenotrophomonas isolates from diverse effluent treatment plants
-
Verma V, Raju SC, Kapley A, Kalia VC, Purohit HJ (2011) Evaluation of genetic and functional diversity of Stenotrophomonas isolates from diverse effluent treatment plants. Bioresour Technol 101: 7744-7753.
-
(2011)
Bioresour Technol
, vol.101
, pp. 7744-7753
-
-
Verma, V.1
Raju, S.C.2
Kapley, A.3
Kalia, V.C.4
Purohit, H.J.5
-
8
-
-
77955516907
-
DNA sequence-based analysis of the Pseudomonas species
-
Mulet M, Lalucat J, Garcia-Valdes E (2010) DNA sequence-based analysis of the Pseudomonas species. Environ Microbiol 12: 1513-1530.
-
(2010)
Environ Microbiol
, vol.12
, pp. 1513-1530
-
-
Mulet, M.1
Lalucat, J.2
Garcia-Valdes, E.3
-
9
-
-
0033865962
-
Phylogenetic affiliation of the pseudomonads based on 16S rRNA sequence
-
Anzai Y, Kim H, Park JY, Wakabayashi H, Oyaizu H (2000) Phylogenetic affiliation of the pseudomonads based on 16S rRNA sequence. Int J Syst Evol Microbiol 50: 1563-1589.
-
(2000)
Int J Syst Evol Microbiol
, vol.50
, pp. 1563-1589
-
-
Anzai, Y.1
Kim, H.2
Park, J.Y.3
Wakabayashi, H.4
Oyaizu, H.5
-
10
-
-
0030459930
-
The determination and comparison of the 16S rRNA gene sequences of species of the genus Pseudomonas sensu stricto and estimation of the natural intrageneric relationships
-
Moore ERB, Mau M, Arnscheidt A, Bottger EC, Hutson RA, Collins MD, van De Peer Y, De Wachter R, Timmis KN (1996) The determination and comparison of the 16S rRNA gene sequences of species of the genus Pseudomonas sensu stricto and estimation of the natural intrageneric relationships. Syst Appl Microbiol 19: 478-492.
-
(1996)
Syst Appl Microbiol
, vol.19
, pp. 478-492
-
-
Moore, E.R.B.1
Mau, M.2
Arnscheidt, A.3
Bottger, E.C.4
Hutson, R.A.5
Collins, M.D.6
van De Peer, Y.7
De Wachter, R.8
Timmis, K.N.9
-
12
-
-
78651088845
-
Analysis of the unexplored features of rrs (16S rDNA) of the genus Clostridium
-
Kalia VC, Mukherjee T, Bhushan A, Joshi J, Shankar P, Huma N (2011) Analysis of the unexplored features of rrs (16S rDNA) of the genus Clostridium. BMC Genomics 12: 18.
-
(2011)
BMC Genomics
, vol.12
, pp. 18
-
-
Kalia, V.C.1
Mukherjee, T.2
Bhushan, A.3
Joshi, J.4
Shankar, P.5
Huma, N.6
-
13
-
-
84856205140
-
Phylogeny in aid of the present and novel microbial lineages: diversity in Bacillus
-
Porwal S, Lal S, Cheema S, Kalia VC (2009) Phylogeny in aid of the present and novel microbial lineages: diversity in Bacillus. PLoS One 4: e4438.
-
(2009)
PLoS One
, vol.4
-
-
Porwal, S.1
Lal, S.2
Cheema, S.3
Kalia, V.C.4
-
14
-
-
79959419852
-
Exploring internal features of 16S rRNA gene for identification of clinically relevant species of the genus Streptococcus
-
Lal D, Verma M, Lal R (2011) Exploring internal features of 16S rRNA gene for identification of clinically relevant species of the genus Streptococcus. Ann Clin Microbiol Antimicrob 10: 28.
-
(2011)
Ann Clin Microbiol Antimicrob
, vol.10
, pp. 28
-
-
Lal, D.1
Verma, M.2
Lal, R.3
-
15
-
-
84863288435
-
Using the RDP classifier to predict taxonomic novelty and reduce the search space for finding novel organisms
-
Lan Y, Wang Q, Cole JR, Rosen GL (2012) Using the RDP classifier to predict taxonomic novelty and reduce the search space for finding novel organisms. PLoS One 7: e32491.
-
(2012)
PLoS One
, vol.7
-
-
Lan, Y.1
Wang, Q.2
Cole, J.R.3
Rosen, G.L.4
-
16
-
-
67649653746
-
Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens
-
Silby MW, Cerdeño-Tárraga AM, Vernikos GS, Giddens RS, Jackson RW, Preston GM, Zhang X-X, Moon CD, Gehrig SM, Godfrey SAC, Knight CG, Malone JG, Robinson Z, Spiers AJ, Harris S, Challis GL, Yaxley AM, Harris D, Seeger K, Murphy L, Rutter S, Squares R, Quail MA, Saunders E, Mavromatis K, Brettin TS, Bentley D, Shothersall J, Stephens E, Thomas CM, Parkhill J, Levy SB, Rainey PB, Thomson NR (2009) Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens. Genome Biol 10: R51.
-
(2009)
Genome Biol
, vol.10
-
-
Silby, M.W.1
Cerdeño-Tárraga, A.M.2
Vernikos, G.S.3
Giddens, R.S.4
Jackson, R.W.5
Preston, G.M.6
Zhang, X.-X.7
Moon, C.D.8
Gehrig, S.M.9
Godfrey, S.A.C.10
Knight, C.G.11
Malone, J.G.12
Robinson, Z.13
Spiers, A.J.14
Harris, S.15
Challis, G.L.16
Yaxley, A.M.17
Harris, D.18
Seeger, K.19
Murphy, L.20
Rutter, S.21
Squares, R.22
Quail, M.A.23
Saunders, E.24
Mavromatis, K.25
Brettin, T.S.26
Bentley, D.27
Shothersall, J.28
Stephens, E.29
Thomas, C.M.30
Parkhill, J.31
Levy, S.B.32
Rainey, P.B.33
Thomson, N.R.34
more..
-
17
-
-
84890747867
-
Comparative genomics of Pseudomonas
-
B. H. A. Rehm (Ed.), Weinheim: Wiley-VCH
-
Kiil K, Binnewies TT, Willenbrock H, Hansen SK, Yang L, Jelsbak L, Ussery DW, Friis C (2008) Comparative genomics of Pseudomonas. In: Rehm BHA (ed) Pseudomonas: model organism, pathogen, cell factory. Wiley-VCH, Weinheim, pp 1-24.
-
(2008)
Pseudomonas: Model Organism, Pathogen, Cell Factory
, pp. 1-24
-
-
Kiil, K.1
Binnewies, T.T.2
Willenbrock, H.3
Hansen, S.K.4
Yang, L.5
Jelsbak, L.6
Ussery, D.W.7
Friis, C.8
-
18
-
-
0036933708
-
Pseudomonas aeruginosa displays an epidemic population structure
-
Pirnay JP, De Vos D, Cochez C, Bilocq F, Vanderkelen A, Zizi M, Ghysels B, Cornelis P (2002) Pseudomonas aeruginosa displays an epidemic population structure. Environ Microbiol 4: 898-911.
-
(2002)
Environ Microbiol
, vol.4
, pp. 898-911
-
-
Pirnay, J.P.1
De Vos, D.2
Cochez, C.3
Bilocq, F.4
Vanderkelen, A.5
Zizi, M.6
Ghysels, B.7
Cornelis, P.8
-
19
-
-
33750919098
-
Cultivation-independent analysis of Pseudomonas species in soil and in the rhizoshpere of field-grown Verticillium dahliae host plants
-
Costa R, Salles JF, Berg G, Smalla K (2006) Cultivation-independent analysis of Pseudomonas species in soil and in the rhizoshpere of field-grown Verticillium dahliae host plants. Environ Microbiol 8: 2136-2149.
-
(2006)
Environ Microbiol
, vol.8
, pp. 2136-2149
-
-
Costa, R.1
Salles, J.F.2
Berg, G.3
Smalla, K.4
-
20
-
-
0033764790
-
Phylogeny of the genus Pseudomonas: intrageneric structure reconstructed from the nucleotide sequences of gyrB and rpoD genes
-
Yamamoto S, Kasai H, Arnold DL, Jackson RW, Vivian A, Harayama S (2000) Phylogeny of the genus Pseudomonas: intrageneric structure reconstructed from the nucleotide sequences of gyrB and rpoD genes. Microbiology 146: 2385-2394.
-
(2000)
Microbiology
, vol.146
, pp. 2385-2394
-
-
Yamamoto, S.1
Kasai, H.2
Arnold, D.L.3
Jackson, R.W.4
Vivian, A.5
Harayama, S.6
-
21
-
-
79551680560
-
Inferring the evolutionary history of the plant pathogen Pseudomonas syringae from its biogeography in headwaters of rivers in North America, Europe, and New Zealand
-
Morris CE, Sands DC, Vanneste JL, Montarry J, Oakley B, Guibaud Glaux C (2010) Inferring the evolutionary history of the plant pathogen Pseudomonas syringae from its biogeography in headwaters of rivers in North America, Europe, and New Zealand. Mol Biol 1: e00107-e00110.
-
(2010)
Mol Biol
, vol.1
-
-
Morris, C.E.1
Sands, D.C.2
Vanneste, J.L.3
Montarry, J.4
Oakley, B.5
Guibaud Glaux, C.6
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