Limited diversity in the gene pool allows prediction of third-generation cephalosporin and aminoglycoside resistance in Escherichia coli and Klebsiella pneumoniae

International Journal of Antimicrobial Agents

Volumn 42, Issue 1, 2013, Pages 19-26

  Ginn, Andrew N ^a,b   Zong, Zhiyong ^a,c   Wiklendt, Agnieszka M ^a   Thomas, Lee C ^a   Merlino, John ^d   Gottlieb, Thomas ^d   Van Hal, Sebastiaan ^e,g   Harkness, Jock ^f   Macleod, Colin ^g   Bell, Sydney M ^h   Leroi, Marcel J ⁱ   Partridge, Sally R ^a,b   Iredell, Jonathan R ^a,b  

^a UNIVERSITY OF SYDNEY   (Australia)

^b WESTMEAD HOSPITAL   (Australia)

^c SICHUAN UNIVERSITY   (China)

^d Department of Microbiology and Infectious Diseases   (Australia)

^e New South Wales Government   (Australia)

^f ST VINCENT S HOSPITAL   (Australia)

^g ROYAL PRINCE ALFRED HOSPITAL   (Australia)

^h PRINCE OF WALES HOSPITAL   (Australia)

ⁱ NEPEAN HOSPITAL   (Australia)

Author keywords

Antibiotic resistance; Diagnostic targets; Enterobacteriaceae

Indexed keywords

AMINOGLYCOSIDE ANTIBIOTIC AGENT; CEFOTAXIME; CEFTAZIDIME; CEFTRIAXONE; CEPHALOSPORIN; EXTENDED SPECTRUM BETA LACTAMASE; GENTAMICIN;

AMINO ACID SEQUENCE; ANTIBIOTIC RESISTANCE; ANTIBIOTIC SENSITIVITY; ANTIBIOTIC THERAPY; ARTICLE; BACTERIAL GENETICS; BACTERIAL STRAIN; BACTERIUM CULTURE; BACTERIUM ISOLATE; ENTEROBACTER CLOACAE; ESCHERICHIA COLI; ESCHERICHIA COLI INFECTION; GENE POOL; HUMAN; KLEBSIELLA PNEUMONIAE; KLEBSIELLA PNEUMONIAE INFECTION; MICROBIAL DIVERSITY; MINIMUM INHIBITORY CONCENTRATION; MULTIPLEX POLYMERASE CHAIN REACTION; NUCLEOTIDE SEQUENCE; PHENOTYPE; PREDICTIVE VALUE; PREVALENCE; PRIORITY JOURNAL; PROTEUS MIRABILIS; PSEUDOMONAS AERUGINOSA;

AMINOGLYCOSIDES; ANTI-BACTERIAL AGENTS; AUSTRALIA; CEPHALOSPORINS; DRUG RESISTANCE, BACTERIAL; ESCHERICHIA COLI; ESCHERICHIA COLI INFECTIONS; GENE POOL; HUMANS; KLEBSIELLA INFECTIONS; KLEBSIELLA PNEUMONIAE; MICROBIAL SENSITIVITY TESTS;

EID: 84879234177     PISSN: 09248579     EISSN: 18727913     Source Type: Journal    
DOI: 10.1016/j.ijantimicag.2013.03.003     Document Type: Article

References (30)

1. A. Kumar, D. Roberts, K.E. Wood, B. Light, J.E. Parrillo, and S. Sharma Duration of hypotension before initiation of effective antimicrobial therapy is the critical determinant of survival in human septic shock Crit Care Med 34 2006 1589 1596
2. L.G. Bode, P. van Wunnik, N. Vaessen, P.H. Savelkoul, and L.C. Smeets Rapid detection of methicillin-resistant Staphylococcus aureus in screening samples by relative quantification between the mecA gene and the SA442 gene J Microbiol Methods 89 2012 129 132
3. S.R. Partridge, G. Tsafnat, E. Coiera, and J.R. Iredell Gene cassettes and cassette arrays in mobile resistance integrons FEMS Microbiol Rev 33 2009 757 784
4. M.C. Roberts, S. Schwarz, and H.J. Aarts Erratum: acquired antibiotic resistance genes: an overview Front Microbiol 3 2012 384
5. J. Ellem, S.R. Partridge, and J.R. Iredell Efficient direct extended-spectrum β-lactamase detection by multiplex real-time PCR: accurate assignment of phenotype using a limited set of genetic markers J Clin Microbiol 49 2011 3074 3077
6. CTX-M within an Australian extended-spectrum β-lactamase gene pool Antimicrob Agents Chemother 52 2008 4198 4202
7. IMP-4 in different genetic contexts in Enterobacteriaceae isolates from Australia Antimicrob Agents Chemother 52 2008 2984 2987
8. F. Kong, and G.L. Gilbert Multiplex PCR-based reverse line blot hybridization assay (mPCR/RLB) - a practical epidemiological and diagnostic tool Nat Protoc 1 2006 2668 2680
9. Clinical and Laboratory Standards Institute Performance standards for antimicrobial susceptibility testing; twenty-first informational supplement. Document M100-S21 2011 CLSI Wayne, PA
10. T. Yagi, J. Wachino, H. Kurokawa, S. Suzuki, K. Yamane, and Y. Doi Practical methods using boronic acid compounds for identification of class C β-lactamase-producing Klebsiella pneumoniae and Escherichia coli J Clin Microbiol 43 2005 2551 2558
11. M.R. Mulvey, G. Soule, D. Boyd, W. Demczuk, and R. Ahmed Characterization of the first extended-spectrum β-lactamase-producing Salmonella isolate identified in Canada J Clin Microbiol 41 2003 460 462
12. H. Vahaboglu, R. Ozturk, H. Akbal, S. Saribas, O. Tansel, and F. Coşkunkan Practical approach for detection and identification of OXA-10-derived ceftazidime-hydrolyzing extended-spectrum β-lactamases J Clin Microbiol 36 1998 827 829
13. N. Woodford, M.J. Ellington, J.M. Coelho, J.F. Turton, M.E. Ward, and S. Brown Multiplex PCR for genes encoding prevalent OXA carbapenemases in Acinetobacter spp. Int J Antimicrob Agents 27 2006 351 353
14. OXA-1 genes in Enterobacteriaceae FEMS Microbiol Lett 223 2003 147 151
15. CTX-M-15 on conjugative IncF plasmids from Escherichia coli Antimicrob Agents Chemother 55 2011 4971 4978
16. J.Y. Kim, Y.J. Park, S.I. Kim, M.W. Kang, S.O. Lee, and K.Y. Lee Nosocomial outbreak by Proteus mirabilis producing extended-spectrum β-lactamase VEB-1 in a Korean university hospital J Antimicrob Chemother 54 2004 1144 1147
17. N.V. Coleman, and A.J. Holmes The native Pseudomonas stutzeri strain Q chromosomal integron can capture and express cassette-associated genes Microbiology 151 2005 1853 1864
18. K. Yamane, J. Wachino, S. Suzuki, H. Kato, K. Shibayama, and K. Kimura 16S rRNA methylase-producing, Gram-negative pathogens, Japan Emerg Infect Dis 13 2007 642 646
19. M. Wang, D.F. Sahm, G.A. Jacoby, and D.C. Hooper Emerging plasmid-mediated quinolone resistance associated with the qnr gene in Klebsiella pneumoniae clinical isolates in the United States Antimicrob Agents Chemother 48 2004 1295 1299
20. A. Robicsek, J. Strahilevitz, D.F. Sahm, G.A. Jacoby, and D.C. Hooper qnr prevalence in ceftazidime-resistant Enterobacteriaceae isolates from the United States Antimicrob Agents Chemother 50 2006 2872 2874
21. S.R. Partridge Analysis of antibiotic resistance regions in Gram-negative bacteria FEMS Microbiol Rev 35 2011 820 855
22. P.A. Bradford Extended-spectrum β-lactamases in the 21st century: characterization, epidemiology, and detection of this important resistance threat Clin Microbiol Rev 14 2001 933 951
23. N. Lincopan, J.A. McCulloch, C. Reinert, V.C. Cassettari, A.C. Gales, and E.M. Mamizuka First isolation of metallo-β-lactamase-producing multiresistant Klebsiella pneumoniae from a patient in Brazil J Clin Microbiol 43 2005 516 519
24. M.V. Villegas, K. Lolans, A. Correa, C.J. Suarez, J.A. Lopez, and M. Vallejo First detection of the plasmid-mediated class A carbapenemase KPC-2 in clinical isolates of Klebsiella pneumoniae from South America Antimicrob Agents Chemother 50 2006 2880 2882
25. C.S. Chiang, C.P. Liu, L.C. Weng, N.Y. Wang, and G.J. Liaw Presence of β-lactamase gene TEM-1 DNA sequence in commercial Taq DNA polymerase J Clin Microbiol 43 2005 530 531
26. N. Woodford, E.J. Fagan, and M.J. Ellington Multiplex PCR for rapid detection of genes encoding CTX-M extended-spectrum β-lactamases J Antimicrob Chemother 57 2006 154 155
27. F.J. Pérez-Pérez, and N.D. Hanson Detection of plasmid-mediated AmpC β-lactamase genes in clinical isolates by using multiplex PCR J Clin Microbiol 40 2002 2153 2162
28. TEM genes encoding β-lactamases resistant to clavulanic acid in clinical E. coli J Mol Evol 44 1997 57 65
29. N. Caroff, E. Espaze, I. Bérard, H. Richet, and A. Reynaud Mutations in the ampC promoter of Escherichia coli isolates resistant to oxyiminocephalosporins without extended spectrum β-lactamase production FEMS Microbiol Lett 173 1999 459 465
30. V. Sintchenko, J.R. Iredell, G.L. Gilbert, and E. Coiera What do physicians think about evidence-based antibiotic use in critical care? A survey of Australian intensivists and infectious disease practitioners Intern Med J 31 2001 462 469