Recombination in IS26 and Tn2 in the evolution of multiresistance regions carrying bla CTX-M-15on conjugative IncF plasmids from Escherichia coli

Antimicrobial Agents and Chemotherapy

Volumn 55, Issue 11, 2011, Pages 4971-4978

  Partridge, Sally R ^a   Zong, Zhiyong ^a,b   Iredell, Jonathan R ^a  

^a UNIVERSITY OF SYDNEY   (Australia)

^b SICHUAN UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

BETA LACTAMASE CTX M; BETA LACTAMASE CTX M 15; MULTIDRUG RESISTANCE PROTEIN; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL GENE; CONTROLLED STUDY; ESCHERICHIA COLI; GENE DELETION; GENE INSERTION; GENE INSERTION SEQUENCE; GENE REARRANGEMENT; HOMOLOGOUS RECOMBINATION; INCF PLASMID; IS26 BACTERIAL GENE; MULTIRESISTANCE REGION; NONHUMAN; NUCLEOTIDE SEQUENCE; PLASMID; PRIORITY JOURNAL; REPLICON; TN2 BACTERIAL GENE; UNITED KINGDOM;

ANTI-BACTERIAL AGENTS; DRUG RESISTANCE, BACTERIAL; DRUG RESISTANCE, MULTIPLE; ESCHERICHIA COLI; EVOLUTION, MOLECULAR; MICROBIAL SENSITIVITY TESTS; PLASMIDS;

EID: 80054679837     PISSN: 00664804     EISSN: 10986596     Source Type: Journal    
DOI: 10.1128/AAC.00025-11     Document Type: Article

References (50)

1. TEM-containing transposons in commensal Escherichia coli. J. Antimicrob. Chemother. 66:745-751.
2. Baquero, F. 2004. From pieces to patterns: evolutionary engineering in bacterial pathogens. Nat. Rev. Microbiol. 2:510-518. (Pubitemid 39200018)
3. Barton, B. M., G. P. Harding, and A. J. Zuccarelli. 1995. A general method for detecting and sizing large plasmids. Anal. Biochem. 226:235-240.
4. Baudry, P. J., et al. 2009. Mechanisms of resistance and mobility among multidrug-resistant CTX-M-producing Escherichia coli from Canadian intensive care units: the 1st report of QepA in North America. Diagn. Microbiol. Infect. Dis. 63:319-326.
5. Bonnet, R. 2004. Growing group of extended-spectrum β-lactamases: the CTX-M enzymes. Antimicrob. Agents Chemother. 48:1-14. (Pubitemid 38040170)
6. Boyd, D. A., et al. 2004. Complete nucleotide sequence of a 92-kilobase plasmid harboring the CTX-M-15 extended-spectrum beta-lactamase involved in an outbreak in long-term-care facilities in Toronto, Canada. Antimicrob. Agents Chemother. 48:3758-3764. (Pubitemid 39304600)
7. Cantón, R., and T. M. Coque. 2006. The CTX-M β-lactamase pandemic. Curr. Opin. Microbiol. 9:466-475.
8. Carattoli, A., et al. 2005. Identification of plasmids by PCR-based replicon typing. J. Microbiol. Methods 63:219-228. (Pubitemid 41597366)
9. Chandler, M., and J. Mahillon. 2002. Insertion sequences revisited, p. 306-367. In N. L. Craig, R. Cragie, M. Gellert, and A. M. Lambowitz (ed.), Mobile DNA. ASM Press, Washington, DC.
10. Coque, T. M., et al. 2008. Dissemination of clonally related Escherichia coli strains expressing extended-spectrum β-lactamase CTX-M-15. Emerg. Infect. Dis. 14:195-200. (Pubitemid 351213667)
11. CTX-M genes in different plasmids of German clinical isolates of Escherichia coli. J. Med. Microbiol. 59:580-587.
12. ESBL and surrounding genes in Spanish clinical isolates of Escherichia coli and Klebsiella pneumoniae. J. Antimicrob. Chemother. 61:60-66.
13. Eckert, C., V. Gautier, and G. Arlet. 2006. DNA sequence analysis of the genetic environment of various blaCTX-M genes. J. Antimicrob. Chemother. 57:14-23. (Pubitemid 43057054)
14. KPC carbapenemase genes on plasmids from Klebsiella strains isolated in a New York City hospital. Antimicrob. Agents Chemother. 53: 1998-2004.
15. Goussard, S., and P. Courvalin. 1999. Updated sequence information for TEM β-lactamase genes. Antimicrob. Agents Chemother. 43:367-370. (Pubitemid 29079175)
16. Grindley, N. D. F. 2002. The movement of Tn3-like elements: transposition and cointegrate resolution, p. 272-302. In N. L. Craig, R. Craigie, M. Gellert, and A. M. Lambowitz (ed.), Mobile DNA II. ASM Press, Washington, DC.
17. Hopkins, K. L., et al. 2006. Replicon typing of plasmids carrying CTX-M or CMY β-lactamases circulating among Salmonella and Escherichia coli isolates. Antimicrob. Agents Chemother. 50:3203-3206. (Pubitemid 44396441)
18. Karisik, E., et al. 2006. Molecular characterization of plasmids encoding CTX-M-15 β-lactamases from Escherichia coli strains in the United Kingdom. J. Antimicrob. Chemother. 58:665-668. (Pubitemid 44288136)
19. CTX-M of Kluyvera ascorbata. Antimicrob. Agents Chemother. 50:1282-1286.
20. Lavollay, M., et al. 2006. Clonal dissemination of a CTX-M-15 β-lactamaseproducing Escherichia coli strain in the Paris area, Tunis, and Bangui. Antimicrob. Agents Chemother. 50:2433-2438. (Pubitemid 43993183)
21. Leflon-Guibout, V., et al. 2004. Emergence and spread of three clonally related virulent isolates of CTX-M-15-producing Escherichia coli with variable resistance to aminoglycosides and tetracycline in a French geriatric hospital. Antimicrob. Agents Chemother. 48:3736-3742. (Pubitemid 39304597)
22. Machado, E., et al. 2006. Dissemination in Portugal of CTX-M-15-, OXA-1-, and TEM-1-producing Enterobacteriaceae strains containing the aac(6')- Ib-cr gene, which encodes an aminoglycoside- and fluoroquinolone-modifying enzyme. Antimicrob. Agents Chemother. 50:3220-3221. (Pubitemid 44396445)
23. Montesinos, I., et al. 2010. Molecular characterization of plasmids encoding CTX-M-15 extended-spectrum β-lactamase associated with the ST131 Escherichia coli clone in Belgium. J. Antimicrob. Chemother. 65:1828-1830.
24. Nicolas-Chanoine, M. H., et al. 2008. Intercontinental emergence of Escherichia coli clone O25:H4-ST131 producing CTX-M-15. J. Antimicrob. Chemother. 61:273-281.
25. Novais, A., et al. 2010. International spread and persistence of TEM-24 is caused by the confluence of highly penetrating Enterobacteriaceae clones and an IncA/C2 plasmid containing Tn1696::Tn1 and IS5075-Tn21. Antimicrob. Agents Chemother. 54:825-834.
26. Novais, A., et al. 2006. Emergence and dissemination of Enterobacteriaceae isolates producing CTX-M-1-like enzymes in Spain are associated with IncFII (CTX-M-15) and broad-host-range (CTX-M-1, -3, and -32) plasmids. Antimicrob. Agents Chemother. 51:796-799. (Pubitemid 46188296)
27. Ochman, H., A. S. Gerber, and D. L. Hartl. 1988. Genetic applications of an inverse polymerase chain reaction. Genetics 120:621-623. (Pubitemid 18260496)
28. Osborn, A. M., F. M. da Silva Tatley, L. M. Steyn, R. W. Pickup, and J. R. Saunders. 2000. Mosaic plasmids and mosaic replicons: evolutionary lessons from the analysis of genetic diversity in IncFII-related replicons. Microbiology 146:2267-2275.
29. Partridge, S. R. 2011. Analysis of antibiotic resistance regions in Gramnegative bacteria. FEMS Microbiol. Rev. 35:820-855.
30. Partridge, S. R., and R. M. Hall. 2004. Complex multiple antibiotic and mercury resistance region derived from the r-det of NR1 (R100). Antimicrob. Agents Chemother. 48:4250-4255. (Pubitemid 39434883)
31. Partridge, S. R., G. Tsafnat, E. Coiera, and J. R. Iredell. 2009. Gene cassettes and cassette arrays in mobile resistance integrons. FEMS Microbiol. Rev. 33:757-784.
32. Peirano, G., and J. D. Pitout. 2010. Molecular epidemiology of Escherichiacoli producing CTX-M β-lactamases: the worldwide emergence of clone ST131 O25:H4. Int. J. Antimicrob. Agents 35:316-321.
33. CTX-M β-lactamase gene. Antimicrob. Agents Chemother. 47:2938-2945.
34. CTX-M in Escherichia coli. Antimicrob. Agents Chemother. 49:447-450.
35. Rogers, B. A., H. E. Sidjabat, and D. L. Paterson. 2010. Escherichia coli O25b-ST131: a pandemic, multiresistant, community-associated strain. J. Antimicrob. Chemother. 66:1-14.
36. Sambrook, J., and D. W. Russell. 2001. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
37. Sidjabat, H. E., et al. 2009. Molecular epidemiology of CTX-M-producing Escherichia coli isolates at a tertiary medical center in western Pennsylvania. Antimicrob. Agents Chemother. 53:4733-4739.
38. Smet, A., et al. 2010. Complete nucleotide sequence of CTX-M-15-plasmids from clinical Escherichia coli isolates: insertional events of transposons and insertion sequences. PLoS One 5:e11202.
39. Soge, O. O., A. M. Queenan, K. K. Ojo, B. A. Adeniyi, and M. C. Roberts. 2006. CTX-M-15 extended-spectrum β-lactamase from Nigerian Klebsiella pneumoniae. J. Antimicrob. Chemother. 57:24-30. (Pubitemid 43057055)
40. Szczepanowski, R., et al. 2005. The 120 592 bp IncF plasmid pRSB107 isolated from a sewage-treatment plant encodes nine different antibioticresistance determinants, two iron-acquisition systems and other putative virulence-associated functions. Microbiology 151:1095-1111. (Pubitemid 40568006)
41. Villa, L., A. Garcia-Fernandez, D. Fortini, and A. Carattoli. 2010. Replicon sequence typing of IncF plasmids carrying virulence and resistance determinants. J. Antimicrob. Chemother. 65:2518-2529.
42. Walsh, T. R. 2006. Combinatorial genetic evolution of multiresistance. Curr. Opin. Microbiol. 9:476-482. (Pubitemid 44397636)
43. Wirth, T., et al. 2006. Sex and virulence in Escherichia coli: an evolutionary perspective. Mol. Microbiol. 60:1136-1151.
44. Woodford, N., et al. 2009. Complete nucleotide sequences of plasmids pEK204, pEK499, and pEK516, encoding CTX-M enzymes in three major Escherichia coli lineages from the United Kingdom, all belonging to the international O25:H4-ST131 clone. Antimicrob. Agents Chemother. 53: 4472-4482.
45. Woodford, N., et al. 2004. Community and hospital spread of Escherichia coli producing CTX-M extended-spectrum β-lactamases in the UK. J. Antimicrob. Chemother. 54:735-743. (Pubitemid 39386725)
46. Wrighton, C. J., and P. Strike. 1987. A pathway for the evolution of the plasmid NTP16 involving the novel kanamycin resistance transposon Tn4352. Plasmid 17:37-45. (Pubitemid 17043254)
47. Xu, L., et al. 2011. Regional survey of CTX-M-type extended-spectrum β-lactamases among Enterobacteriaceae reveals marked heterogeneity in the distribution of the ST131 clone. J. Antimicrob. Chemother. 66:505-511.
48. Yau, S., X. Liu, S. P. Djordjevic, and R. M. Hall. 2010. RSF1010-like plasmids in Australian Salmonella enterica serovar Typhimurium and origin of their sul2-strA-strB antibiotic resistance gene cluster. Microb. Drug Resist. 16:249-252.
49. Zhao, F., et al. 2010. Sequencing and genetic variation of multidrug resistance plasmids in Klebsiella pneumoniae. PLoS One 5:e10141.
50. Zong, Z., S. R. Partridge, L. Thomas, and J. R. Iredell. 2008. Dominance of blaCTX-M within an Australian extended-spectrum β-lactamase gene pool. Antimicrob. Agents Chemother. 52:4198-4202.