-
1
-
-
0042594614
-
The molecular basis of vitamin e retention: Structure of human α-tocopherol transfer protein
-
Meier, R., Tomizaki, T., Schulze-Briese, C., Baumann, U., and Stocker, A. (2003) The molecular basis of vitamin E retention: Structure of human α-tocopherol transfer protein J. Mol. Biol. 331, 725-734
-
(2003)
J. Mol. Biol.
, vol.331
, pp. 725-734
-
-
Meier, R.1
Tomizaki, T.2
Schulze-Briese, C.3
Baumann, U.4
Stocker, A.5
-
2
-
-
77958144919
-
Ataxia with vitamin e deficiency: Update of molecular diagnosis
-
Di Donato, I., Bianchi, S., and Federico, A. (2010) Ataxia with vitamin E deficiency: Update of molecular diagnosis Neurol. Sci. 31, 511-515
-
(2010)
Neurol. Sci.
, vol.31
, pp. 511-515
-
-
Di Donato, I.1
Bianchi, S.2
Federico, A.3
-
3
-
-
26444454915
-
Structural insights into the cellular retinaldehyde binding protein (CRALBP)
-
Liu, T., Jenwitheesuk, E., Teller, D. C., and Samudrala, R. (2005) Structural insights into the cellular retinaldehyde binding protein (CRALBP) Proteins 61, 412-422
-
(2005)
Proteins
, vol.61
, pp. 412-422
-
-
Liu, T.1
Jenwitheesuk, E.2
Teller, D.C.3
Samudrala, R.4
-
4
-
-
34248209062
-
Conformational Dynamics of the Major Yeast Phosphatidylinositol Transfer Protein Sec14p: Insight into the Mechanisms of Phospholipid Exchange and Diseases of Sec14p-Like Protein Deficiencies
-
Ryan, M. M., Temple, B. R. S., Phillips, S. E., and Bankaitis, V. A. (2007) Conformational Dynamics of the Major Yeast Phosphatidylinositol Transfer Protein Sec14p: Insight into the Mechanisms of Phospholipid Exchange and Diseases of Sec14p-Like Protein Deficiencies Mol. Biol. Cell 18, 1928-1942
-
(2007)
Mol. Biol. Cell
, vol.18
, pp. 1928-1942
-
-
Ryan, M.M.1
Temple, B.R.S.2
Phillips, S.E.3
Bankaitis, V.A.4
-
5
-
-
0038348648
-
Ligand specificity in the CRAL-TRIO protein family
-
Panagabko, C., Morley, S., Hernandez, M., Cassolato, P., Gordon, H., Parsons, R., Manor, D., and Atkinson, J. (2003) Ligand specificity in the CRAL-TRIO protein family Biochemistry 42, 6467-6474
-
(2003)
Biochemistry
, vol.42
, pp. 6467-6474
-
-
Panagabko, C.1
Morley, S.2
Hernandez, M.3
Cassolato, P.4
Gordon, H.5
Parsons, R.6
Manor, D.7
Atkinson, J.8
-
6
-
-
0031889483
-
Ataxia with Isolated Vitamin e Deficiency: Heterogeneity of Mutations and Phenotypic Variability in a Large Number of Families
-
Cavalier, L., Ouahchi, K., Kayden, H. J., Di Donato, S., Reutenauer, L., Mandel, J.-L., and Koenig, M. (1998) Ataxia with Isolated Vitamin E Deficiency: Heterogeneity of Mutations and Phenotypic Variability in a Large Number of Families Am. J. Hum. Genet. 62, 301-310
-
(1998)
Am. J. Hum. Genet.
, vol.62
, pp. 301-310
-
-
Cavalier, L.1
Ouahchi, K.2
Kayden, H.J.3
Di Donato, S.4
Reutenauer, L.5
Mandel, J.-L.6
Koenig, M.7
-
7
-
-
1842583929
-
Molecular Determinants of Heritable Vitamin e Deficiency
-
Morley, S., Panagabko, C., Shineman, D., Mani, B., Stocker, A., Atkinson, J., and Manor, D. (2004) Molecular Determinants of Heritable Vitamin E Deficiency Biochemistry 43, 4143-4149
-
(2004)
Biochemistry
, vol.43
, pp. 4143-4149
-
-
Morley, S.1
Panagabko, C.2
Shineman, D.3
Mani, B.4
Stocker, A.5
Atkinson, J.6
Manor, D.7
-
8
-
-
79952855542
-
Resurrection of a functional phosphatidylinositol transfer protein from a pseudo-Sec14 scaffold by directed evolution
-
Schaaf, G., Dynowski, M., Mousley, C. J., Shah, S. D., Yuan, P., Winklbauer, E. M., de Campos, M. K. F., Trettin, K., Quinones, M.-C., Smirnova, T. I., Yanagisawa, L. L., Ortlund, E. A., and Bankaitis, V. A. (2011) Resurrection of a functional phosphatidylinositol transfer protein from a pseudo-Sec14 scaffold by directed evolution Mol. Biol. Cell 22, 892-905
-
(2011)
Mol. Biol. Cell
, vol.22
, pp. 892-905
-
-
Schaaf, G.1
Dynowski, M.2
Mousley, C.J.3
Shah, S.D.4
Yuan, P.5
Winklbauer, E.M.6
De Campos, M.K.F.7
Trettin, K.8
Quinones, M.-C.9
Smirnova, T.I.10
Yanagisawa, L.L.11
Ortlund, E.A.12
Bankaitis, V.A.13
-
9
-
-
0017411710
-
The protein data bank: A computer-based archival file for macromolecular structures
-
Bernstein, F. C., Koetzle, T. F., Williams, G. J., Meyer, E. F., Brice, M. D., Rodgers, J. R., Kennard, O., Shimanouchi, T., and Tasumi, M. (1977) The protein data bank: A computer-based archival file for macromolecular structures J. Mol. Biol. 112, 535-542
-
(1977)
J. Mol. Biol.
, vol.112
, pp. 535-542
-
-
Bernstein, F.C.1
Koetzle, T.F.2
Williams, G.J.3
Meyer, E.F.4
Brice, M.D.5
Rodgers, J.R.6
Kennard, O.7
Shimanouchi, T.8
Tasumi, M.9
-
10
-
-
0003540404
-
-
Molecular Applications Group, Stanford University, Palo Alto, CA, and Yeda, Rehovot, Israel
-
Levitt, M. (1990) ENCAD-Energy calculations and dynamics, Molecular Applications Group, Stanford University, Palo Alto, CA, and Yeda, Rehovot, Israel.
-
(1990)
ENCAD-Energy Calculations and Dynamics
-
-
Levitt, M.1
-
11
-
-
0029633167
-
Potential energy function and parameters for simulations of the molecular dynamics of proteins and nucleic acids in solution
-
Levitt, M., Hirshberg, M., Sharon, R., and Daggett, V. (1995) Potential energy function and parameters for simulations of the molecular dynamics of proteins and nucleic acids in solution Comput. Phys. Commun. 91, 215-231
-
(1995)
Comput. Phys. Commun.
, vol.91
, pp. 215-231
-
-
Levitt, M.1
Hirshberg, M.2
Sharon, R.3
Daggett, V.4
-
12
-
-
84879238365
-
Ilmm
-
University of Washington, Seattle
-
Beck, D. A. C., Alonso, D. O. V., and Daggett, V. (2000-2013) ilmm, in lucem Molecular Mechanics, University of Washington, Seattle.
-
(2000)
Lucem Molecular Mechanics
-
-
Beck, D.A.C.1
Alonso, D.O.V.2
Daggett, V.3
-
13
-
-
3342918929
-
Methods for molecular dynamics simulations of protein folding/unfolding in solution
-
Beck, D. A. C. and Daggett, V. (2004) Methods for molecular dynamics simulations of protein folding/unfolding in solution Methods 34, 112-120
-
(2004)
Methods
, vol.34
, pp. 112-120
-
-
Beck, D.A.C.1
Daggett, V.2
-
14
-
-
0000125216
-
Calibration and Testing of a Water Model for Simulation of the Molecular Dynamics of Proteins and Nucleic Acids in Solution
-
Levitt, M., Hirshberg, M., Sharon, R., Laidig, K. E., and Daggett, V. (1997) Calibration and Testing of a Water Model for Simulation of the Molecular Dynamics of Proteins and Nucleic Acids in Solution J. Phys. Chem. B 101, 5051-5061
-
(1997)
J. Phys. Chem. B
, vol.101
, pp. 5051-5061
-
-
Levitt, M.1
Hirshberg, M.2
Sharon, R.3
Laidig, K.E.4
Daggett, V.5
-
15
-
-
26444534036
-
Characterization of a possible amyloidogenic precursor in glutamine-repeat neurodegenerative diseases
-
Armen, R. S., Bernard, B. M., Day, R., Alonso, D. O., and Daggett, V. (2005) Characterization of a possible amyloidogenic precursor in glutamine-repeat neurodegenerative diseases Proc. Natl. Acad. Sci. U.S.A. 102, 13433-13438
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 13433-13438
-
-
Armen, R.S.1
Bernard, B.M.2
Day, R.3
Alonso, D.O.4
Daggett, V.5
-
16
-
-
0009979659
-
Precise representation of volume properties of water at one atmosphere
-
Kell, G. S. (1967) Precise representation of volume properties of water at one atmosphere J. Chem. Eng. Data 12, 66-69
-
(1967)
J. Chem. Eng. Data
, vol.12
, pp. 66-69
-
-
Kell, G.S.1
-
17
-
-
12144275299
-
Cutoff size need not strongly influence molecular dynamics results for solvated polypeptides
-
Beck, D. A., Armen, R. S., and Daggett, V. (2005) Cutoff size need not strongly influence molecular dynamics results for solvated polypeptides Biochemistry 44, 609-616
-
(2005)
Biochemistry
, vol.44
, pp. 609-616
-
-
Beck, D.A.1
Armen, R.S.2
Daggett, V.3
-
18
-
-
44649116524
-
Dynameomics: Mass annotation of protein dynamics and unfolding in water by high-throughput atomistic molecular dynamics simulations
-
Beck, D. A. C., Jonsson, A. L., Schaeffer, R. D., Scott, K. A., Day, R., Toofanny, R. D., Alonso, D. O., and Daggett, V. (2008) Dynameomics: Mass annotation of protein dynamics and unfolding in water by high-throughput atomistic molecular dynamics simulations Protein Eng., Des. Sel. 21, 353-368
-
(2008)
Protein Eng., Des. Sel.
, vol.21
, pp. 353-368
-
-
Beck, D.A.C.1
Jonsson, A.L.2
Schaeffer, R.D.3
Scott, K.A.4
Day, R.5
Toofanny, R.D.6
Alonso, D.O.7
Daggett, V.8
-
19
-
-
77951680969
-
Dynameomics: A comprehensive database of protein dynamics
-
Van der Kamp, M. W., Schaeffer, R. D., Jonsson, A. L., Scouras, A. D., Simms, A. M., Toofanny, R. D., Benson, N. C., Anderson, P. C., Merkley, E. D., Rysavy, S., Bromley, D., Beck, D. A. C., and Daggett, V. (2010) Dynameomics: A comprehensive database of protein dynamics Structure 18, 423-435
-
(2010)
Structure
, vol.18
, pp. 423-435
-
-
Van Der Kamp, M.W.1
Schaeffer, R.D.2
Jonsson, A.L.3
Scouras, A.D.4
Simms, A.M.5
Toofanny, R.D.6
Benson, N.C.7
Anderson, P.C.8
Merkley, E.D.9
Rysavy, S.10
Bromley, D.11
Beck, D.A.C.12
Daggett, V.13
-
20
-
-
0141524060
-
A consensus view of fold space: Combining SCOP, CATH, and the Dali Domain Dictionary
-
Day, R., Beck, D. A. C., Armen, R. S., and Daggett, V. (2003) A consensus view of fold space: Combining SCOP, CATH, and the Dali Domain Dictionary Protein Sci. 12, 2150-2160
-
(2003)
Protein Sci.
, vol.12
, pp. 2150-2160
-
-
Day, R.1
Beck, D.A.C.2
Armen, R.S.3
Daggett, V.4
-
21
-
-
78650524534
-
Generation of a consensus protein domain dictionary
-
Schaeffer, R. D., Jonsson, A. L., Simms, A. M., and Daggett, V. (2011) Generation of a consensus protein domain dictionary Bioinformatics 27, 46-54
-
(2011)
Bioinformatics
, vol.27
, pp. 46-54
-
-
Schaeffer, R.D.1
Jonsson, A.L.2
Simms, A.M.3
Daggett, V.4
-
23
-
-
4444221565
-
UCSF Chimera: A visualization system for exploratory research and analysis
-
Pettersen, E. F., Goddard, T. D., Huang, C. C., Couch, G. S., Greenblatt, D. M., Meng, E. C., and Ferrin, T. E. (2004) UCSF Chimera: A visualization system for exploratory research and analysis J. Comput. Chem. 25, 1605-1612
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1605-1612
-
-
Pettersen, E.F.1
Goddard, T.D.2
Huang, C.C.3
Couch, G.S.4
Greenblatt, D.M.5
Meng, E.C.6
Ferrin, T.E.7
-
24
-
-
70350023194
-
Structural changes to monomeric CuZn superoxide dismutase caused by the familial amyotrophic lateral sclerosis-associated mutation A4V
-
Schmidlin, T., Kennedy, B. K., and Daggett, V. (2009) Structural changes to monomeric CuZn superoxide dismutase caused by the familial amyotrophic lateral sclerosis-associated mutation A4V Biophys. J. 97, 1709-1718
-
(2009)
Biophys. J.
, vol.97
, pp. 1709-1718
-
-
Schmidlin, T.1
Kennedy, B.K.2
Daggett, V.3
-
25
-
-
0034274870
-
An open graph visualization system and its applications to software engineering
-
Gansner, E. R. and North, S. C. (2000) An open graph visualization system and its applications to software engineering Software-Practice and Experience 30, 1203-1233
-
(2000)
Software - Practice and Experience
, vol.30
, pp. 1203-1233
-
-
Gansner, E.R.1
North, S.C.2
-
26
-
-
67650558679
-
Efficient, high-quality force-directed graph drawing
-
Hu, Y. (2005) Efficient, high-quality force-directed graph drawing Mathematica Journal 10, 37-71
-
(2005)
Mathematica Journal
, vol.10
, pp. 37-71
-
-
Hu, Y.1
-
27
-
-
76149120388
-
AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading
-
Trott, O. and Olson, A. J. (2010) AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading J. Comput. Chem. 31, 455-461
-
(2010)
J. Comput. Chem.
, vol.31
, pp. 455-461
-
-
Trott, O.1
Olson, A.J.2
-
28
-
-
79251598103
-
The contribution of surface residues to membrane binding and ligand transfer by the α-tocopherol transfer protein (α-TTP)
-
Zhang, W. X., Thakur, V., Lomize, A., Pogozheva, I., Panagabko, C., Cecchini, M., Baptist, M., Morley, S., Manor, D., and Atkinson, J. (2010) The contribution of surface residues to membrane binding and ligand transfer by the α-tocopherol transfer protein (α-TTP) J. Mol. Biol. 405, 972-988
-
(2010)
J. Mol. Biol.
, vol.405
, pp. 972
-
-
Zhang, W.X.1
Thakur, V.2
Lomize, A.3
Pogozheva, I.4
Panagabko, C.5
Cecchini, M.6
Baptist, M.7
Morley, S.8
Manor, D.9
Atkinson, J.10
|