Genetic diversity of the golden potato cyst nematode Globodera rostochiensis and determination of the origin of populations in Quebec, Canada

Molecular Phylogenetics and Evolution

Volumn 69, Issue 1, 2013, Pages 75-82

  Boucher, Annie Christine ^a,c   Mimee, Benjamin ^a   Montarry, Josselin ^b   Bardou Valette, Sylvie ^b   Bélair, Guy ^a   Moffett, Peter ^c   Grenier, Eric ^b  

^a AGRICULTURE AND AGRI FOOD CANADA   (Canada)

^b Universite Rennes 1   (France)

^c UNIVERSITÉ DE SHERBROOKE   (Canada)

Author keywords

Genetic structure; Globodera rostochiensis; Microsatellite; Multiple introductions; Population genetics; Potato cyst nematode

Indexed keywords

MICROSATELLITE DNA;

ANIMAL; ARTICLE; BOLIVIA; CANADA; CLASSIFICATION; DNA SEQUENCE; GENETIC VARIABILITY; GENETICS; GENOTYPE; GLOBODERA; GLOBODERA ROSTOCHIENSIS; INTRODUCED SPECIES; LIFE CYCLE STAGE; MICROSATELLITE; MULTIPLE INTRODUCTIONS; PARASITOLOGY; PHENOTYPE; PHYLOGENY; PHYLOGEOGRAPHY; PLANT DISEASE; POPULATION GENETICS; POTATO; TYLENCHOIDEA; UNITED STATES;

GENETIC STRUCTURE; GLOBODERA ROSTOCHIENSIS; MICROSATELLITE; MULTIPLE INTRODUCTIONS; POPULATION GENETICS; POTATO CYST NEMATODE;

ANIMALS; BOLIVIA; GENETIC VARIATION; GENETICS, POPULATION; GENOTYPE; INTRODUCED SPECIES; LIFE CYCLE STAGES; MICROSATELLITE REPEATS; NEW YORK; PHENOTYPE; PHYLOGENY; PHYLOGEOGRAPHY; PLANT DISEASES; QUEBEC; SEQUENCE ANALYSIS, DNA; SOLANUM TUBEROSUM; TYLENCHOIDEA;

GLOBODERA; GLOBODERA ROSTOCHIENSIS; SOLANUM TUBEROSUM;

EID: 84879203134     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2013.05.020     Document Type: Article

References (40)

1. Belkhir, K., Borsa, P., Chikhi, L., Raufaste, N., Bonhomme, F., 2004. GENETIX 4.05, A Windows™-based Software for Population Genetic Analyses. Laboratoire Génome, Populations, Interaction CNRS UMR 5000, Université de Montpellier II, Montpellier, France.
2. Brodie B.B. The occurrence of a second pathotype of potato cyst nematode in New York. J. Nematol. 1995, 27:493-494.
3. Cannon O.S. Heterodera schachtii found in a Long Island potato field. Plant Dis. Rep. 1941, 25:408.
4. El Mousadik A., Petit R.J. High level of genetic differentiation for allelic richness among populations of the argan tree [Argania spinosa (L.) Skeels] endemic to Morocco. Theor. Appl. Genet. 1996, 92:832-839.
5. Evanno G., Regnaut S., Goudet J. Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol. Ecol. 2005, 14:2611-2620.
6. Evans K., Stone A.R. A review of the distribution and biology of the potato cyst-nematodes Globodera rostochiensis and G. pallida. Trop. Pest Manage. 1977, 23:178-189.
7. Evans K., Franco J., De Scurrah M.M. Distribution of species of potato cyst-nematodes in South America. Nematologica 1975, 21:365-369.
8. Falush D., Stephens M., Pritchard J.K. Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics 2003, 164:1567-1587.
9. Grenier E., Fournet S., Petit E., Anthoine G. A cyst nematode 'species factory' called the Andes. Nematology 2010, 12:163-169.
10. Guichoux E., Lagache L., Wagner S., Chaumeil P., Léger P., Lepais O., Lepoittevin C., Malausa T., Revardel E., Salin F., et al. Current trends in microsatellite genotyping. Mol. Ecol. Resour. 2011, 11:591-611.
11. Hockland S., Niere B., Grenier E., Blok V., Phillips M., Den Nijs L., Anthoine G., Pickup J., Viaene N. An evaluation of the implications of virulence in non-European populations of Globodera pallida and G. rostochiensis for potato cultivation in Europe. Nematology 2012, 14:1-13.
12. Holleley C.E., Geerts P.G. Multiplex manager 1.0: a cross-platform computer program that plans and optimizes multiplex PCR. Biotechniques 2009, 46:511-517.
13. Jarne P., Lagoda P.J.L. Microsatellites, from molecules to populations and back. Trends Ecol. Evol. 1996, 11:424-429.
14. Langella,O., 1999. Populations 1.2.31. Population Genetic Software (Individuals or Populations Distances, Phylogenetic Trees) 2012. <>. http://bioinformatics.org/~tryphon/populations/.
15. Madani M., Subbotin S.A., Ward L.J., Li X., De Boer S.H. Molecular characterization of Canadian populations of potato cyst nematodes, Globodera rostochiensis and G. pallida using ribosomal nuclear RNA and cytochrome B genes. Can. J. Plant Pathol. 2010, 32:252-263.
16. Mahran A., Turner S., Martin T., Yu Q., Miller S., Sun F. The golden potato cyst nematode Globodera rostochiensis pathotype Ro1 in the Saint-Amable regulated area in Quebec, Canada. Plant Dis. 2010, 94:1510.
17. Malausa T., Gilles A., Meglécz E., Blanquart H., Duthoy S., Costedoat C., Dubut V., Pech N., Castagnone-Sereno P., Délye C., et al. High-throughput microsatellite isolation through 454 GS-FLX Titanium pyrosequencing of enriched DNA libraries. Mol. Ecol. Resour. 2011, 11:638-644.
18. Meglécz E., Costedoat C., Dubut V., Gilles A., Malausa T., Pech N., Martin J.F. QDD: a user-friendly program to select microsatellite markers and design primers from large sequencing projects. Bioinformatics 2010, 26:403-404.
19. Mulet K., Fargette M., Richaud M., Genson G., Castagnone-Sereno P. Isolation of microsatellites from an enriched genomic library of the plant-parasitic nematode Meloidogyne incognita and their detection in other root-knot nematode species. Eur. J. Plant Pathol. 2011, 129:501-505.
20. Nei M. Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 1978, 89:583-590.
21. Olsenand O.A., Mulvey R.H. The discovery of golden nematode in Newfoundland. Can. Plant Dis. Surv. 1962, 42:253.
22. Orchard W.R. Occurence of the golden nematode on Vancouver Island, British Columbia. Can. Plant Dis. Surv. 1965, 45:89-91.
23. Picard D., Plantard O., Scurrah M., Mugniéry D. Inbreeding and population structure of the potato cyst nematode (Globodera pallida) in its native area (Peru). Mol. Ecol. 2004, 13:2899-2908.
24. Picard D., Sempere T., Plantard O. A northward colonisation of the Andes by the potato cyst nematode during geological times suggests multiple host-shifts from wild to cultivated potatoes. Mol. Phylogenet. Evol. 2007, 42:308-316.
25. Plantard O., Picard D., Valette S., Scurrah M., Grenier E., Mugniéry D. Origin and genetic diversity of Western European populations of the potato cyst nematode (Globodera pallida) inferred from mitochondrial sequences and microsatellite loci. Mol. Ecol. 2008, 17:2208-2218.
26. Pritchard J.K., Stephens M., Donnelly P. Inference of population structure using multilocus genotype data. Genetics 2000, 155:945-959.
27. Raymond M., Rousset F. An exact test for population differentiation. Evolution 1995, 49:1280-1283.
28. Rott M., Lawrence T., Belton M., Sun F., Kyle D. Occurrence and detection of Globodera rostochiensis on Vancouver Island, British Columbia: an update. Plant Dis. 2010, 94:1367-1371.
29. Schlötterer C. Evolutionary dynamics of microsatellite DNA. Chromosoma 2000, 109:365-371.
30. Schuelke M. An economic method for the fluorescent labeling of PCR fragments. Nat. Biotechnol. 2000, 18:233-234.
31. Selkoe K.A., Toonen R.J. Microsatellites for ecologists: a practical guide to using and evaluating microsatellite markers. Ecol. Lett. 2006, 9:615-629.
32. Spears J.F. The Golden Nematode Handbook: Survey, Laboratory, Control, and Quarantine Procedures 1968, United States Department of Agriculture Agricultural Research Service, Washington, DC.
33. Thiéry M., Mugniéry D. Interspecific rDNA restriction fragment length polymorphism in Globodera species, parasites of Solanaceous plants. Fundam. Appl. Nematol. 1996, 19:471-479.
34. Thiéry M., Mugniéry D. Microsatellite loci in the phytoparasitic nematode Globodera. Genome 2000, 43:160-165.
35. Turner S.J. Population decline of potato cyst nematodes (Globodera rostochiensis, G. pallida) in field soils in Northern Ireland. Ann. Appl. Biol. 1996, 129:315-322.
36. USDA APHIS PPQ, 2011. Golden Nematode Program 2011, USDA APHIS PPQ. Deregulation of Quarantined Areas.
37. Weir B.S., Cockerham C.C. Estimating F-statistics for the analysis of population structure. Evolution 1984, 38:1358-1370.
38. Yang X.M., Sun J.T., Xue X.F., Li J.B., Hong X.Y. Invasion genetics of the western flower thrips in China: evidence for genetic bottleneck, hybridization and bridgehead effect. PLoS One 2012, 7:1-11.
39. Yu Q., Ye W., Sun F., Miller S. Characterization of Globodera rostochiensis (Tylenchida: Heteroderidae) associated with potato in Quebec, Canada. Can. J. Plant Pathol. 2010, 32:264-271.
40. Zepeda-Paulo F.A., Simon J.C., Ramírez C.C., Fuentes-Contreras E., Margaritopoulos J.T., Wilson A.C.C., Sorenson C.E., Briones L.M., Azevedo R., Ohashi D.V., et al. The invasion route for an insect pest species: the tobacco aphid in the New World. Mol. Ecol. 2010, 19:4738-4752.