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Volumn 959, Issue , 2013, Pages 277-302

Isolation and analysis of mrnas from specific cell types of plants by ribosome immunopuri fication

Author keywords

Cell specific gene expression; Differential expression analysis; Microarray; Polysomes; Ribosome immunopuri fication; Translatome

Indexed keywords

MESSENGER RNA; RIBOSOMAL PROTEIN L18; RIBOSOME PROTEIN; UNCLASSIFIED DRUG;

EID: 84879157149     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-62703-221-6_19     Document Type: Article
Times cited : (18)

References (69)
  • 1
    • 38149109010 scopus 로고    scopus 로고
    • A high-resolution root spatiotemporal map reveals dominant expression patterns
    • Brady SM, Orlando DA, Lee JY et al (2007) A high-resolution root spatiotemporal map reveals dominant expression patterns. Science 318:801-806
    • (2007) Science , vol.318 , pp. 801-806
    • Brady, S.M.1    Orlando, D.A.2    Lee, J.Y.3
  • 3
  • 4
    • 64249092417 scopus 로고    scopus 로고
    • Transcriptional networks in root cell fate speci fi cation
    • Iyer-Pascuzzi AS, Benfey PN (2009) Transcriptional networks in root cell fate speci fi cation. Biochim Biophys Acta 1789: 315-325
    • (2009) Biochim Biophys Acta , vol.1789 , pp. 315-325
    • Iyer-Pascuzzi, A.S.1    Benfey, P.N.2
  • 5
    • 0036273494 scopus 로고    scopus 로고
    • Signaling in and out: Control of cell division and differentiation in the shoot and root
    • Nakajima K, Benfey PN (2002) Signaling in and out: control of cell division and differentiation in the shoot and root. Plant Cell 14(Suppl):S265-S276
    • (2002) Plant Cell , vol.14 , Issue.SUPPL.
    • Nakajima, K.1    Benfey, P.N.2
  • 6
    • 53349180597 scopus 로고    scopus 로고
    • Root layers: Complex regulation of developmental patterning
    • Petricka JJ, Benfey PN (2008) Root layers: complex regulation of developmental patterning. Curr Opin Genet Dev 18:354-361
    • (2008) Curr Opin Genet Dev , vol.18 , pp. 354-361
    • Petricka, J.J.1    Benfey, P.N.2
  • 7
    • 44949213903 scopus 로고    scopus 로고
    • A genetic regulatory network in the development of trichomes and root hairs
    • Ishida T, Kurata T, Okada K et al (2008) A genetic regulatory network in the development of trichomes and root hairs. Annu Rev Plant Biol 59:365-386
    • (2008) Annu Rev Plant Biol , vol.59 , pp. 365-386
    • Ishida, T.1    Kurata, T.2    Okada, K.3
  • 8
    • 72849114044 scopus 로고    scopus 로고
    • The gene regulatory network for root epidermal cell-type pattern formation in Arabidopsis
    • Schiefelbein J, Kwak SH, Wieckowski Y et al (2009) The gene regulatory network for root epidermal cell-type pattern formation in Arabidopsis. J Exp Bot 60:1515-1521
    • (2009) J Exp Bot , vol.60 , pp. 1515-1521
    • Schiefelbein, J.1    Kwak, S.H.2    Wieckowski, Y.3
  • 9
    • 34247282083 scopus 로고    scopus 로고
    • Transcriptional pro fi ling of the Arabidopsis embryo
    • Spencer MW, Casson SA, Lindsey K (2007) Transcriptional pro fi ling of the Arabidopsis embryo. Plant Physiol 143:924-940
    • (2007) Plant Physiol , vol.143 , pp. 924-940
    • Spencer, M.W.1    Casson, S.A.2    Lindsey, K.3
  • 10
    • 59149095771 scopus 로고    scopus 로고
    • A transcriptome atlas of rice cell types uncovers cellular, functional and developmental hierarchies
    • Jiao Y, Tausta SL, Gandotra N et al (2009) A transcriptome atlas of rice cell types uncovers cellular, functional and developmental hierarchies. Nat Genet 41:258-263
    • (2009) Nat Genet , vol.41 , pp. 258-263
    • Jiao, Y.1    Tausta, S.L.2    Gandotra, N.3
  • 11
    • 70849111801 scopus 로고    scopus 로고
    • A gene expression analysis of syncytia laser microdissected from the roots of the Glycine max (soybean) genotype PI 548402 (Peking) undergoing a resistant reaction after infection by Heterodera glycines (soybean cyst nematode)
    • Klink VP, Hosseini P, Matsye P et al (2009) A gene expression analysis of syncytia laser microdissected from the roots of the Glycine max (soybean) genotype PI 548402 (Peking) undergoing a resistant reaction after infection by Heterodera glycines (soybean cyst nematode). Plant Mol Biol 71: 525-567
    • (2009) Plant Mol Biol , vol.71 , pp. 525-567
    • Klink, V.P.1    Hosseini, P.2    Matsye, P.3
  • 12
    • 77954767385 scopus 로고    scopus 로고
    • Tissue-speci fi c transcriptome pro fi ling of the citrus fruit epidermis and subepidermis using laser capture microdissection
    • Matas AJ, Agusti J, Tadeo FR et al (2010) Tissue-speci fi c transcriptome pro fi ling of the citrus fruit epidermis and subepidermis using laser capture microdissection. J Exp Bot 61:3321-3330
    • (2010) J Exp Bot , vol.61 , pp. 3321-3330
    • Matas, A.J.1    Agusti, J.2    Tadeo, F.R.3
  • 13
    • 0347447343 scopus 로고    scopus 로고
    • A gene expression map of the Arabidopsis root
    • Birnbaum K, Shasha DE, Wang JY et al (2003) A gene expression map of the Arabidopsis root. Science 302:1956-1960
    • (2003) Science , vol.302 , pp. 1956-1960
    • Birnbaum, K.1    Shasha, D.E.2    Wang, J.Y.3
  • 14
    • 44249114568 scopus 로고    scopus 로고
    • Cell identity mediates the response of Arabidopsis roots to abiotic stress
    • Dinneny JR, Long TA, Wang JY et al (2008) Cell identity mediates the response of Arabidopsis roots to abiotic stress. Science 320:942-945
    • (2008) Science , vol.320 , pp. 942-945
    • Dinneny, J.R.1    Long, T.A.2    Wang, J.Y.3
  • 15
    • 38649096571 scopus 로고    scopus 로고
    • Cell-speci fi c nitrogen responses mediate developmental plasticity
    • Gifford ML, Dean A, Gutierrez RA et al (2008) Cell-speci fi c nitrogen responses mediate developmental plasticity. Proc Natl Acad Sci USA 105:803-808
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 803-808
    • Gifford, M.L.1    Dean, A.2    Gutierrez, R.A.3
  • 16
    • 50649091418 scopus 로고    scopus 로고
    • Global characterization of cell-speci fi c gene expression through fl uorescence-activated sorting of nuclei
    • Zhang C, Barthelson RA, Lambert GM et al (2008) Global characterization of cell-speci fi c gene expression through fl uorescence-activated sorting of nuclei. Plant Physiol 147:30-40
    • (2008) Plant Physiol , vol.147 , pp. 30-40
    • Zhang, C.1    Barthelson, R.A.2    Lambert, G.M.3
  • 17
    • 79956278277 scopus 로고    scopus 로고
    • Multiparametric analysis, sorting, and transcriptional pro fi ling of plant protoplasts and nuclei according to cell type
    • Galbraith DW, Janda J, Lambert GM (2011) Multiparametric analysis, sorting, and transcriptional pro fi ling of plant protoplasts and nuclei according to cell type. Methods Mol Biol 699:407-429
    • (2011) Methods Mol Biol , vol.699 , pp. 407-429
    • Galbraith, D.W.1    Janda, J.2    Lambert, G.M.3
  • 18
    • 73249145845 scopus 로고    scopus 로고
    • Pro fi ling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis
    • Mustroph A, Zanetti ME, Jang CJ et al (2009) Pro fi ling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis. Proc Natl Acad Sci USA 106:18843-18848
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 18843-18848
    • Mustroph, A.1    Zanetti, M.E.2    Jang, C.J.3
  • 19
    • 77957799907 scopus 로고    scopus 로고
    • Cell-type speci fi c analysis of translating RNAs in developing fl owers reveals new levels of control
    • Jiao Y, Meyerowitz EM (2010) Cell-type speci fi c analysis of translating RNAs in developing fl owers reveals new levels of control. Mol Syst Biol 6:419
    • (2010) Mol Syst Biol , vol.6 , pp. 419
    • Jiao, Y.1    Meyerowitz, E.M.2
  • 20
    • 77955967051 scopus 로고    scopus 로고
    • A simple method for gene expression and chromatin pro fi ling of individual cell types within a tissue
    • Deal RB, Henikoff S (2010) A simple method for gene expression and chromatin pro fi ling of individual cell types within a tissue. Dev Cell 18:1030-1040
    • (2010) Dev Cell , vol.18 , pp. 1030-1040
    • Deal, R.B.1    Henikoff, S.2
  • 21
    • 29544440189 scopus 로고    scopus 로고
    • Transcriptional pro fi le of the Arabidopsis root quiescent center
    • Nawy T, Lee JY, Colinas J et al (2005) Transcriptional pro fi le of the Arabidopsis root quiescent center. Plant Cell 17:1908-1925
    • (2005) Plant Cell , vol.17 , pp. 1908-1925
    • Nawy, T.1    Lee, J.Y.2    Colinas, J.3
  • 22
    • 63849261018 scopus 로고    scopus 로고
    • Gene expression map of the Arabidopsis shoot apical meristem stem cell niche
    • Yadav RK, Girke T, Pasala S et al (2009) Gene expression map of the Arabidopsis shoot apical meristem stem cell niche. Proc Natl Acad Sci USA 106:4941-4946
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 4941-4946
    • Yadav, R.K.1    Girke, T.2    Pasala, S.3
  • 23
    • 79952588544 scopus 로고    scopus 로고
    • RIP-Chip analysis: RNA-binding protein immunoprecipitation-microarray (chip) pro fi ling
    • Jain R, Devine T, George AD et al (2011) RIP-Chip analysis: RNA-binding protein immunoprecipitation-microarray (chip) pro fi ling. Methods Mol Biol 703:247-263
    • (2011) Methods Mol Biol , vol.703 , pp. 247-263
    • Jain, R.1    Devine, T.2    George, A.D.3
  • 24
    • 26944438704 scopus 로고    scopus 로고
    • Immunopuri fi cation of polyribosomal complexes of Arabidopsis for global analysis of gene expression
    • Zanetti ME, Chang IF, Gong F et al (2005) Immunopuri fi cation of polyribosomal complexes of Arabidopsis for global analysis of gene expression. Plant Physiol 138:624-635
    • (2005) Plant Physiol , vol.138 , pp. 624-635
    • Zanetti, M.E.1    Chang, I.F.2    Gong, F.3
  • 25
    • 2542642407 scopus 로고    scopus 로고
    • Differential mRNA translation contributes to gene regulation under non-stress and dehydration stress conditions in Arabidopsis thaliana
    • Kawaguchi R, Girke T, Bray EA et al (2004) Differential mRNA translation contributes to gene regulation under non-stress and dehydration stress conditions in Arabidopsis thaliana . Plant J 38:823-839
    • (2004) Plant J , vol.38 , pp. 823-839
    • Kawaguchi, R.1    Girke, T.2    Bray, E.A.3
  • 26
    • 13944270653 scopus 로고    scopus 로고
    • MRNA sequence features that contribute to translational regulation in Arabidopsis
    • Kawaguchi R, Bailey-Serres J (2005) mRNA sequence features that contribute to translational regulation in Arabidopsis. Nucleic Acids Res 33:955-965
    • (2005) Nucleic Acids Res , vol.33 , pp. 955-965
    • Kawaguchi, R.1    Bailey-Serres, J.2
  • 27
    • 24744454639 scopus 로고    scopus 로고
    • Genome-wide analysis of transcript abundance and translation in Arabidopsis seedlings subjected to oxygen deprivation
    • Branco-Price C, Kawaguchi R, Ferreira RB et al (2005) Genome-wide analysis of transcript abundance and translation in Arabidopsis seedlings subjected to oxygen deprivation. Ann Bot 96:647-660
    • (2005) Ann Bot , vol.96 , pp. 647-660
    • Branco-Price, C.1    Kawaguchi, R.2    Ferreira, R.B.3
  • 28
    • 33646236814 scopus 로고    scopus 로고
    • Membrane-associated transcripts in Arabidopsis; Their isolation and characterization by DNA microarray analysis and bioinformatics
    • de Jong M, van Breukelen B, Wittink FR et al (2006) Membrane-associated transcripts in Arabidopsis; their isolation and characterization by DNA microarray analysis and bioinformatics. Plant J 46:708-721
    • (2006) Plant J , vol.46 , pp. 708-721
    • De Jong, M.1    Van Breukelen, B.2    Wittink, F.R.3
  • 29
    • 33745663309 scopus 로고    scopus 로고
    • Large-scale analysis of mRNA translation states during sucrose starvation in Arabidopsis cells identi fi es cell proliferation and chromatin structure as targets of translational control
    • Nicolai M, Roncato MA, Canoy AS et al (2006) Large-scale analysis of mRNA translation states during sucrose starvation in Arabidopsis cells identi fi es cell proliferation and chromatin structure as targets of translational control. Plant Physiol 141:663-673
    • (2006) Plant Physiol , vol.141 , pp. 663-673
    • Nicolai, M.1    Roncato, M.A.2    Canoy, A.S.3
  • 30
    • 57449111072 scopus 로고    scopus 로고
    • Selective mRNA translation coordinates energetic and metabolic adjustments to cellular oxygen deprivation and reoxygenation in Arabidopsis thaliana
    • Branco-Price C, Kaiser KA, Jang CJ et al (2008) Selective mRNA translation coordinates energetic and metabolic adjustments to cellular oxygen deprivation and reoxygenation in Arabidopsis thaliana . Plant J 56:743-755
    • (2008) Plant J , vol.56 , pp. 743-755
    • Branco-Price, C.1    Kaiser, K.A.2    Jang, C.J.3
  • 31
    • 73149106617 scopus 로고    scopus 로고
    • Ribosome and transcript copy numbers, polysome occupancy and enzyme dynamics in Arabidopsis
    • Piques M, Schulze WX, Höhne M et al (2009) Ribosome and transcript copy numbers, polysome occupancy and enzyme dynamics in Arabidopsis. Mol Syst Biol 5:314
    • (2009) Mol Syst Biol , vol.5 , pp. 314
    • Piques, M.1    Schulze, W.X.2    Höhne, M.3
  • 32
    • 0032918120 scopus 로고    scopus 로고
    • Selective translation of cytoplasmic mRNAs in plants
    • Bailey-Serres J (1999) Selective translation of cytoplasmic mRNAs in plants. Trends Plant Sci 4:142-148
    • (1999) Trends Plant Sci , vol.4 , pp. 142-148
    • Bailey-Serres, J.1
  • 33
    • 0036779335 scopus 로고    scopus 로고
    • Regulation of translational initiation in plants
    • Kawaguchi R, Bailey-Serres J (2002) Regulation of translational initiation in plants. Curr Opin Plant Biol 5:460-465
    • (2002) Curr Opin Plant Biol , vol.5 , pp. 460-465
    • Kawaguchi, R.1    Bailey-Serres, J.2
  • 34
    • 68349154286 scopus 로고    scopus 로고
    • Getting the message across: Cytoplasmic ribonucleoprotein complexes
    • Bailey-Serres J, Sorenson R, Juntawong P (2009) Getting the message across: cytoplasmic ribonucleoprotein complexes. Trends Plant Sci 14:443-453
    • (2009) Trends Plant Sci , vol.14 , pp. 443-453
    • Bailey-Serres, J.1    Sorenson, R.2    Juntawong, P.3
  • 35
    • 45849122499 scopus 로고    scopus 로고
    • Widespread translational inhibition by plant miRNAs and siRNAs
    • Brodersen P, Sakvarelidze-Achard L, Bruun- Rasmussen M et al (2008) Widespread translational inhibition by plant miRNAs and siRNAs. Science 320:1185-1190
    • (2008) Science , vol.320 , pp. 1185-1190
    • Brodersen, P.1    Sakvarelidze-Achard, L.2    Bruun- Rasmussen, M.3
  • 36
    • 0029664699 scopus 로고    scopus 로고
    • The homeobox gene GLABRA2 is required for position-dependent cell differentiation in the root epidermis of Arabidopsis thaliana
    • Masucci JD, Rerie WG, Foreman DR et al (1996) The homeobox gene GLABRA2 is required for position-dependent cell differentiation in the root epidermis of Arabidopsis thaliana . Development 122:1253-1260
    • (1996) Development , vol.122 , pp. 1253-1260
    • Masucci, J.D.1    Rerie, W.G.2    Foreman, D.R.3
  • 37
    • 4043062383 scopus 로고    scopus 로고
    • Mosaic analyses using marked activation and deletion clones dissect Arabidopsis SCARECROW action in asymmetric cell division
    • Heidstra R, Welch D, Scheres B (2004) Mosaic analyses using marked activation and deletion clones dissect Arabidopsis SCARECROW action in asymmetric cell division. Genes Dev 18:1964-1969
    • (2004) Genes Dev , vol.18 , pp. 1964-1969
    • Heidstra, R.1    Welch, D.2    Scheres, B.3
  • 38
    • 33747888338 scopus 로고    scopus 로고
    • Quanti fi cation of transcription factor expression from Arabidopsis images
    • Mace DL, Lee J-Y, Twigg RW et al (2006) Quanti fi cation of transcription factor expression from Arabidopsis images. Bioinformatics 22:e323-e331
    • (2006) Bioinformatics , vol.22
    • Mace, D.L.1    Lee, J.-Y.2    Twigg, R.W.3
  • 39
    • 0033961136 scopus 로고    scopus 로고
    • Molecular analysis of SCARECROW function reveals a radial patterning mechanism common to root and shoot
    • Wysocka-Diller JW, Helariutta Y, Fukaki H et al (2000) Molecular analysis of SCARECROW function reveals a radial patterning mechanism common to root and shoot. Development 127:595-603
    • (2000) Development , vol.127 , pp. 595-603
    • Wysocka-Diller, J.W.1    Helariutta, Y.2    Fukaki, H.3
  • 40
    • 0034716906 scopus 로고    scopus 로고
    • The SHORT-ROOT gene controls radial patterning of the Arabidopsis root through radial signaling
    • Helariutta Y, Fukaki H, Wysocka-Diller J et al (2000) The SHORT-ROOT gene controls radial patterning of the Arabidopsis root through radial signaling. Cell 101:555-567
    • (2000) Cell , vol.101 , pp. 555-567
    • Helariutta, Y.1    Fukaki, H.2    Wysocka-Diller, J.3
  • 41
    • 0035799304 scopus 로고    scopus 로고
    • Cytokinin receptor: Just another histidine kinase
    • Estelle M (2001) Cytokinin receptor: just another histidine kinase. Curr Biol 11: 271-273
    • (2001) Curr Biol , vol.11 , pp. 271-273
    • Estelle, M.1
  • 42
    • 0033101834 scopus 로고    scopus 로고
    • Cell-tocell and long-distance traf fi cking of the green fl uorescent protein in the phloem and symplastic unloading of the protein into sink tissues
    • Imlau A, Truernit E, Sauer N (1999) Cell-tocell and long-distance traf fi cking of the green fl uorescent protein in the phloem and symplastic unloading of the protein into sink tissues. Plant Cell 11:309-322
    • (1999) Plant Cell , vol.11 , pp. 309-322
    • Imlau, A.1    Truernit, E.2    Sauer, N.3
  • 43
    • 0033890171 scopus 로고    scopus 로고
    • The roles of three functional sulphate transporters involved in uptake and translocation of sulphate in Arabidopsis thaliana
    • Takahashi H, Watanabe-Takahashi A, Smith FW et al (2000) The roles of three functional sulphate transporters involved in uptake and translocation of sulphate in Arabidopsis thaliana . Plant J 23:171-182
    • (2000) Plant J , vol.23 , pp. 171-182
    • Takahashi, H.1    Watanabe-Takahashi, A.2    Smith, F.W.3
  • 44
    • 0029328360 scopus 로고
    • Developmental regulation of ribosomal protein L16 genes in Arabidopsis thaliana
    • Williams ME, Sussex IM (1995) Developmental regulation of ribosomal protein L16 genes in Arabidopsis thaliana. Plant J 8:65-76
    • (1995) Plant J , vol.8 , pp. 65-76
    • Williams, M.E.1    Sussex, I.M.2
  • 45
    • 0031946298 scopus 로고    scopus 로고
    • Control of GL2 expression in Arabidopsis leaves and trichomes
    • Szymanski DB, Jilk RA, Pollock SM, Marks MD (1998) Control of GL2 expression in Arabidopsis leaves and trichomes. Development 125:1161-1171
    • (1998) Development , vol.125 , pp. 1161-1171
    • Szymanski, D.B.1    Jilk, R.A.2    Pollock, S.M.3    Marks, M.D.4
  • 46
    • 7444248465 scopus 로고    scopus 로고
    • Plant cuticular lipid export requires an ABC transporter
    • Pighin JA, Zheng H, Balakshin LJ et al (2004) Plant cuticular lipid export requires an ABC transporter. Science 306:702-704
    • (2004) Science , vol.306 , pp. 702-704
    • Pighin, J.A.1    Zheng, H.2    Balakshin, L.J.3
  • 47
    • 0029379756 scopus 로고
    • Expression of an Arabidopsis potassium channel gene in guard cells
    • Nakamura RL, McKendree WL Jr, Hirsch RE et al (1995) Expression of an Arabidopsis potassium channel gene in guard cells. Plant Physiol 109:371-374
    • (1995) Plant Physiol , vol.109 , pp. 371-374
    • Nakamura, R.L.1    Hirsch, R.E.2
  • 48
    • 0025375525 scopus 로고
    • Mutation of either G box or i box sequences profoundly affects expression from the Arabidopsis rbcS-1A promoter
    • Donald RG, Cashmore AR (1990) Mutation of either G box or I box sequences profoundly affects expression from the Arabidopsis rbcS-1A promoter. EMBO J 9:1717-1726
    • (1990) EMBO J , vol.9 , pp. 1717-1726
    • Donald, R.G.1    Cashmore, A.R.2
  • 49
    • 0025339859 scopus 로고
    • Pollen-speci fi c gene expression in transgenic plants: Coordinate regulation of two different tomato gene promoters during microsporogenesis
    • Twell D, Yamaguchi J, McCormick S (1990) Pollen-speci fi c gene expression in transgenic plants: coordinate regulation of two different tomato gene promoters during microsporogenesis. Development 109:705-713
    • (1990) Development , vol.109 , pp. 705-713
    • Twell, D.1    Yamaguchi, J.2    McCormick, S.3
  • 50
    • 0032614376 scopus 로고    scopus 로고
    • GFP variants for multispectral imaging of living cells
    • Haseloff J (1999) GFP variants for multispectral imaging of living cells. Methods Cell Biol 58:139-151
    • (1999) Methods Cell Biol , vol.58 , pp. 139-151
    • Haseloff, J.1
  • 51
    • 0033884980 scopus 로고    scopus 로고
    • Cell-type-speci fi c calcium responses to drought, salt and cold in the Arabidopsis root
    • Kiegle E, Moore CA, Haseloff J et al (2000) Cell-type-speci fi c calcium responses to drought, salt and cold in the Arabidopsis root. Plant J 23:267-278
    • (2000) Plant J , vol.23 , pp. 267-278
    • Kiegle, E.1    Moore, C.A.2    Haseloff, J.3
  • 52
    • 0033676098 scopus 로고    scopus 로고
    • DNA cloning using in vitro site-speci fi c recombination
    • Hartley JL, Temple GF, Brasch MA (2000) DNA cloning using in vitro site-speci fi c recombination. Genome Res 10:1788-1795
    • (2000) Genome Res , vol.10 , pp. 1788-1795
    • Hartley, J.L.1    Temple, G.F.2    Brasch, M.A.3
  • 53
    • 24044496959 scopus 로고    scopus 로고
    • The two ribosomal protein L23A genes are differentially transcribed in Arabidopsis thaliana
    • McIntosh KB, Bonham-Smith PC (2005) The two ribosomal protein L23A genes are differentially transcribed in Arabidopsis thaliana . Genome 48:443-454
    • (2005) Genome , vol.48 , pp. 443-454
    • McIntosh, K.B.1    Bonham-Smith, P.C.2
  • 54
    • 73949096456 scopus 로고    scopus 로고
    • Isolation of plant polysomal mRNA by differential centrifugation and ribosome immunopuri fi cation methods
    • Mustroph A, Juntawong P, Bailey-Serres J (2009) Isolation of plant polysomal mRNA by differential centrifugation and ribosome immunopuri fi cation methods. Methods Mol Biol 553:109-126
    • (2009) Methods Mol Biol , vol.553 , pp. 109-126
    • Mustroph, A.1    Juntawong, P.2    Bailey-Serres, J.3
  • 55
    • 0032447801 scopus 로고    scopus 로고
    • Floral dip: A simpli fi ed method for Agrobacterium-mediated transformation of Arabidopsis thaliana
    • Clough SJ, Bent AF (1998) Floral dip: a simpli fi ed method for Agrobacterium-mediated transformation of Arabidopsis thaliana . Plant J 16:735-743
    • (1998) Plant J , vol.16 , pp. 735-743
    • Clough, S.J.1    Bent, A.F.2
  • 56
    • 28744458859 scopus 로고    scopus 로고
    • Bioconductor: Open software development for computational biology and bioinformatics
    • Gentleman RC, Carey VJ, Bates DM et al (2004) Bioconductor: open software development for computational biology and bioinformatics. Genome Biol 5:R80
    • (2004) Genome Biol , vol.5
    • Gentleman, R.C.1    Carey, V.J.2    Bates, D.M.3
  • 57
    • 50649114261 scopus 로고    scopus 로고
    • Annotating genes of known and unknown function by large-scale coexpression analysis
    • Horan K, Jang C, Bailey-Serres J et al (2008) Annotating genes of known and unknown function by large-scale coexpression analysis. Plant Physiol 147:41-57
    • (2008) Plant Physiol , vol.147 , pp. 41-57
    • Horan, K.1    Jang, C.2    Bailey-Serres, J.3
  • 58
    • 59549093642 scopus 로고    scopus 로고
    • ArrayQualityMetrics - A bioconductor package for quality assessment of microarray data
    • Kauffmann A, Gentleman R, Huber W (2009) arrayQualityMetrics - a bioconductor package for quality assessment of microarray data. Bioinformatics 25:415-416
    • (2009) Bioinformatics , vol.25 , pp. 415-416
    • Kauffmann, A.1    Gentleman, R.2    Huber, W.3
  • 59
    • 0142121516 scopus 로고    scopus 로고
    • Exploration, normalization, and summaries of high density oligonucleotide array probe level data
    • Irizarry RA, Hobbs B, Collin F et al (2003) Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 4:249-264
    • (2003) Biostatistics , vol.4 , pp. 249-264
    • Irizarry, R.A.1    Hobbs, B.2    Collin, F.3
  • 60
    • 33645651236 scopus 로고    scopus 로고
    • How to decide? Different methods of calculating gene expression from short oligonucleotide array data will give different results
    • Millenaar FF, Okyere J, May ST et al (2006) How to decide? Different methods of calculating gene expression from short oligonucleotide array data will give different results. BMC Bioinformatics 7:137
    • (2006) BMC Bioinformatics , vol.7 , pp. 137
    • Millenaar, F.F.1    Okyere, J.2    May, S.T.3
  • 61
    • 74049120413 scopus 로고    scopus 로고
    • Calibration of microarray gene-expression data
    • Binder H, Preibisch S, Berger H (2010) Calibration of microarray gene-expression data. Methods Mol Biol 576:375-407
    • (2010) Methods Mol Biol , vol.576 , pp. 375-407
    • Binder, H.1    Preibisch, S.2    Berger, H.3
  • 62
    • 12244313858 scopus 로고    scopus 로고
    • Analysis of high density expression microarrays with signedrank call algorithms
    • Liu WM, Mei R, Di X et al (2002) Analysis of high density expression microarrays with signedrank call algorithms. Bioinformatics 18:1593-1599
    • (2002) Bioinformatics , vol.18 , pp. 1593-1599
    • Liu, W.M.1    Mei Di, R.X.2
  • 63
    • 1342288026 scopus 로고    scopus 로고
    • Affy-analysis of Affymetrix GeneChip data at the probe level
    • Gautier L, Cope L, Bolstad BM et al (2004) Affy-analysis of Affymetrix GeneChip data at the probe level. Bioinformatics 20:307-315
    • (2004) Bioinformatics , vol.20 , pp. 307-315
    • Gautier, L.1    Cope, L.2    Bolstad, B.M.3
  • 64
    • 4544341015 scopus 로고    scopus 로고
    • Linear models and empirical bayes methods for assessing differential expression in microarray experiments
    • Article3
    • Smyth GK (2004) Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol 3:Article3
    • (2004) Stat Appl Genet Mol Biol , vol.3
    • Smyth, G.K.1
  • 65
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini Y, Hochberg Y (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc B 57:289-300
    • (1995) J R Stat Soc B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 67
    • 73949091601 scopus 로고    scopus 로고
    • Manipulating large-scale Arabidopsis microarray expression data: Identifying dominant expression patterns and biological process enrichment
    • Orlando DA, Brady SM, Koch JD et al (2010) Manipulating large-scale Arabidopsis microarray expression data: identifying dominant expression patterns and biological process enrichment. Methods Mol Biol 553:57-77
    • (2010) Methods Mol Biol , vol.553 , pp. 57-77
    • Orlando, D.A.1    Brady, S.M.2    Koch, J.D.3
  • 68
    • 33846689706 scopus 로고    scopus 로고
    • Using GOstats to test gene lists for GO term association
    • Falcon S, Gentleman R (2007) Using GOstats to test gene lists for GO term association. Bioinformatics 23:257-258
    • (2007) Bioinformatics , vol.23 , pp. 257-258
    • Falcon, S.1    Gentleman, R.2
  • 69
    • 12144291195 scopus 로고    scopus 로고
    • MAPMAN: A user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes
    • Thimm O, Blaesing O, Gibon Y et al (2004) MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes. Plant J 37:914-939
    • (2004) Plant J , vol.37 , pp. 914-939
    • Thimm, O.1    Blaesing, O.2    Gibon, Y.3


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