-
1
-
-
0037043699
-
Isolation of a human gene that inhibits HIV-1 infection and is suppressed by the viral vif protein
-
Sheehy AM, Gaddis NC, Choi JD, Malim MH. Isolation of a human gene that inhibits HIV-1 infection and is suppressed by the viral vif protein. Nature. 2002;418(6898):646-50.
-
(2002)
Nature
, vol.418
, Issue.6898
, pp. 646-650
-
-
Sheehy, A.M.1
Gaddis, N.C.2
Choi, J.D.3
Malim, M.H.4
-
2
-
-
84864576348
-
Endogenous origins of HIV-1 G-to-A hypermutation and restriction in the nonpermissive T cell line CEM2n
-
Refsland EW, Hultquist JF, Harris RS. Endogenous origins of HIV-1 G-to-A hypermutation and restriction in the nonpermissive T cell line CEM2n. PLoS Pathog. 2012;8(7):e1002800.
-
(2012)
PLoS Pathog
, vol.8
, Issue.7
-
-
Refsland, E.W.1
Hultquist, J.F.2
Harris, R.S.3
-
3
-
-
0038681023
-
Broad antiretroviral defence by human APOBEC3G through lethal editing of nascent reverse transcripts
-
Mangeat B, Turelli P, Caron G, Friedli M, Perrin L, Trono D. Broad antiretroviral defence by human APOBEC3G through lethal editing of nascent reverse transcripts. Nature. 2003;424(6944):99-103.
-
(2003)
Nature
, vol.424
, Issue.6944
, pp. 99-103
-
-
Mangeat, B.1
Turelli, P.2
Caron, G.3
Friedli, M.4
Perrin, L.5
Trono, D.6
-
4
-
-
19344370916
-
Assessment of drug resistance mutations in plasma and peripheral blood mononuclear cells at different plasma viral loads in patients receiving HAART
-
Chew CB, Potter SJ, Wang B, Wang YM, Shaw CO, Dwyer DE, et al. Assessment of drug resistance mutations in plasma and peripheral blood mononuclear cells at different plasma viral loads in patients receiving HAART. J Clin Virol. 2005;33(3):206-16.
-
(2005)
J Clin Virol
, vol.33
, Issue.3
, pp. 206-216
-
-
Chew, C.B.1
Potter, S.J.2
Wang, B.3
Wang, Y.M.4
Shaw, C.O.5
Dwyer, D.E.6
-
5
-
-
33750997315
-
Natural resistance to HIV infection: The vif-APOBEC interaction
-
Malim MH. Natural resistance to HIV infection: the vif-APOBEC interaction. C R Biol. 2006;329(11):871-5.
-
(2006)
C R Biol
, vol.329
, Issue.11
, pp. 871-875
-
-
Malim, M.H.1
-
6
-
-
2342633240
-
Single-strand specificity of APOBEC3G accounts for minus-strand deamination of the HIV genome
-
Yu Q, Konig R, Pillai S, Chiles K, Kearney M, Palmer S, et al. Single-strand specificity of APOBEC3G accounts for minus-strand deamination of the HIV genome. Nat Struct Mol Biol. 2004;11(5):435-42.
-
(2004)
Nat Struct Mol Biol
, vol.11
, Issue.5
, pp. 435-442
-
-
Yu, Q.1
Konig, R.2
Pillai, S.3
Chiles, K.4
Kearney, M.5
Palmer, S.6
-
7
-
-
0038004471
-
The cytidine deaminase CEM15 induces hypermutation in newly synthesized HIV-1 DNA
-
Zhang H, Yang B, Pomerantz RJ, Zhang CM, Arunachalam SC, Gao L. The cytidine deaminase CEM15 induces hypermutation in newly synthesized HIV-1 DNA. Nature. 2003;424(6944):94-8.
-
(2003)
Nature
, vol.424
, Issue.6944
, pp. 94-98
-
-
Zhang, H.1
Yang, B.2
Pomerantz, R.J.3
Zhang, C.M.4
Arunachalam, S.C.5
Gao, L.6
-
8
-
-
77953769689
-
APOBEC3G contributes to HIV-1 variation through sublethal mutagenesis
-
Sadler HA, Stenglein MD, Harris RS, Mansky LM. APOBEC3G contributes to HIV-1 variation through sublethal mutagenesis. J Virol. 2010;84(14):7396-404.
-
(2010)
J Virol
, vol.84
, Issue.14
, pp. 7396-7404
-
-
Sadler, H.A.1
Stenglein, M.D.2
Harris, R.S.3
Mansky, L.M.4
-
9
-
-
66349132212
-
Likely role of APOBEC3G-mediated G-to-A mutations in HIV-1 evolution and drug resistance
-
Jern P, Russell RA, Pathak VK, Coffin JM. Likely role of APOBEC3G-mediated G-to-A mutations in HIV-1 evolution and drug resistance. Plos Pathog. 2009;5(4):e1000367.
-
(2009)
Plos Pathog
, vol.5
, Issue.4
-
-
Jern, P.1
Russell, R.A.2
Pathak, V.K.3
Coffin, J.M.4
-
10
-
-
44449093971
-
Cytidine deamination induced HIV-1 drug resistance
-
Mulder LCF, Harari A, Simon V. Cytidine deamination induced HIV-1 drug resistance. Proc Natl Acad Sci U S A. 2008;105(14):5501-6.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, Issue.14
, pp. 5501-5506
-
-
Mulder, L.C.F.1
Harari, A.2
Simon, V.3
-
11
-
-
33748511879
-
Population level analysis of human immunodeficiency virus type 1 hypermutation and its relationship with APOBEC3G and vif genetic variation
-
Pace C, Keller J, Nolan D, James I, Gaudieri S, Moore C, et al. Population level analysis of human immunodeficiency virus type 1 hypermutation and its relationship with APOBEC3G and vif genetic variation. J Virol. 2006;80(18):9259-69.
-
(2006)
J Virol
, vol.80
, Issue.18
, pp. 9259-9269
-
-
Pace, C.1
Keller, J.2
Nolan, D.3
James, I.4
Gaudieri, S.5
Moore, C.6
-
12
-
-
49149090397
-
Human immunodeficiency virus (HIV) type 1 proviral hypermutation correlates with CD4 count in HIV-infected women from Kenya
-
Land AM, Ball TB, Luo M, Pilon R, Sandstrom P, Embree JE, et al. Human immunodeficiency virus (HIV) type 1 proviral hypermutation correlates with CD4 count in HIV-infected women from Kenya. J Virol. 2008;82(16):8172-82.
-
(2008)
J Virol
, vol.82
, Issue.16
, pp. 8172-8182
-
-
Land, A.M.1
Ball, T.B.2
Luo, M.3
Pilon, R.4
Sandstrom, P.5
Embree, J.E.6
-
13
-
-
53849138762
-
The Level of APOBEC3G (hA3G)-related G-to-A mutations does not correlate with viral load in HIV type 1-infected individuals
-
Ulenga NK, Sarr AD, Hamel D, Sankale JL, Mboup S, Kanki PJ. The Level of APOBEC3G (hA3G)-related G-to-A mutations does not correlate with viral load in HIV type 1-infected individuals. AIDS Res Hum Retroviruses. 2008;24(10):1285-90.
-
(2008)
AIDS Res Hum Retroviruses
, vol.24
, Issue.10
, pp. 1285-1290
-
-
Ulenga, N.K.1
Sarr, A.D.2
Hamel, D.3
Sankale, J.L.4
Mboup, S.5
Kanki, P.J.6
-
14
-
-
13744255000
-
G0A hypermutation in protease and reverse transcriptase regions of human immunodeficiency virus type 1 residing in resting CD4(+) T cells in vivo
-
Kieffer TL, Kwon P, Nettles RE, Han YF, Ray SC, Siliciano RF. G0A hypermutation in protease and reverse transcriptase regions of human immunodeficiency virus type 1 residing in resting CD4(+) T cells in vivo. J Virol. 2005;79(3):1975-80.
-
(2005)
J Virol
, vol.79
, Issue.3
, pp. 1975-1980
-
-
Kieffer, T.L.1
Kwon, P.2
Nettles, R.E.3
Han, Y.F.4
Ray, S.C.5
Siliciano, R.F.6
-
15
-
-
80052277736
-
Expression of APOBEC3G/3F and G-to-A hypermutation levels in HIV-1-infected children with different profiles of disease progression
-
Amoedo ND, Afonso AO, Cunha SM, Oliveira RH, Machado ES, Soares MA. Expression of APOBEC3G/3F and G-to-A hypermutation levels in HIV-1-infected children with different profiles of disease progression. PLoS One. 2011;6(8):e24118.
-
(2011)
PLoS One
, vol.6
, Issue.8
-
-
Amoedo, N.D.1
Afonso, A.O.2
Cunha, S.M.3
Oliveira, R.H.4
Machado, E.S.5
Soares, M.A.6
-
16
-
-
84865526711
-
E138K and M184I mutations in HIV-1 reverse transcriptase co-emerge as a result of APOBEC3 editing in the absence of drug exposure
-
Fourati S, Malet I, Lambert S, Soulie C, Wirden M, Flandre P, et al. E138K and M184I mutations in HIV-1 reverse transcriptase co-emerge as a result of APOBEC3 editing in the absence of drug exposure. AIDS. 2012;26(13):1619-24.
-
(2012)
AIDS
, vol.26
, Issue.13
, pp. 1619-1624
-
-
Fourati, S.1
Malet, I.2
Lambert, S.3
Soulie, C.4
Wirden, M.5
Flandre, P.6
-
17
-
-
77958170997
-
Naturally occurring polymorphisms and primary drug resistance profile among antiretroviral-naive individuals in Bangalore, India
-
Neogi U, Prarthana BS, Gupta S, D'Souza G, De Costa A, Kuttiatt VS, et al. Naturally occurring polymorphisms and primary drug resistance profile among antiretroviral-naive individuals in Bangalore, India. AIDS Res Hum Retroviruses. 2010;26(10):1097-101.
-
(2010)
AIDS Res Hum Retroviruses
, vol.26
, Issue.10
, pp. 1097-1101
-
-
Neogi, U.1
Prarthana, B.S.2
Gupta, S.3
D'Souza, G.4
De Costa, A.5
Kuttiatt, V.S.6
-
18
-
-
84863109843
-
Molecular epidemiology of HIV-1 subtypes in India: Origin and evolutionary history of the predominant subtype C
-
Neogi U, Bontell I, Shet A, De Costa A, Gupta S, Diwan V, et al. Molecular epidemiology of HIV-1 subtypes in India: origin and evolutionary history of the predominant subtype C. PLoS One. 2012;7(6):e39819.
-
(2012)
PLoS One
, vol.7
, Issue.6
-
-
Neogi, U.1
Bontell, I.2
Shet, A.3
De Costa, A.4
Gupta, S.5
Diwan, V.6
-
19
-
-
79957613599
-
MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. 2011;28(10):2731-9.
-
(2011)
Mol Biol Evol
, vol.28
, Issue.10
, pp. 2731-2739
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
Stecher, G.4
Nei, M.5
Kumar, S.6
-
20
-
-
0034124124
-
Detecting hypermutations in viral sequences with an emphasis on G 0A hypermutation
-
Rose PP, Korber BT. Detecting hypermutations in viral sequences with an emphasis on G 0A hypermutation. Bioinformatics. 2000;16(4):400-1.
-
(2000)
Bioinformatics
, vol.16
, Issue.4
, pp. 400-401
-
-
Rose, P.P.1
Korber, B.T.2
-
21
-
-
41349120548
-
Sequence editing by apolipoprotein B RNA-editing catalytic component-B and epidemiological surveillance of transmitted HIV-1 drug resistance
-
Gifford RJ, Rhee SY, Eriksson N, Liu TF, Kiuchi M, Das AK, et al. Sequence editing by apolipoprotein B RNA-editing catalytic component-B and epidemiological surveillance of transmitted HIV-1 drug resistance. AIDS. 2008;22(6):717-25.
-
(2008)
AIDS
, vol.22
, Issue.6
, pp. 717-725
-
-
Gifford, R.J.1
Rhee, S.Y.2
Eriksson, N.3
Liu, T.F.4
Kiuchi, M.5
Das, A.K.6
-
22
-
-
62749200513
-
Drug resistance mutations for surveillance of transmitted HIV-1 drug-resistance: Update
-
Bennett DE, Camacho RJ, Otelea D, Kuritzkes DR, Fleury H, Kiuchi M, et al. Drug resistance mutations for surveillance of transmitted HIV-1 drug-resistance: update. PLoS One. 2009;4(3):e4724.
-
(2009)
PLoS One
, vol.4
, Issue.3
-
-
Bennett, D.E.1
Camacho, R.J.2
Otelea, D.3
Kuritzkes, D.R.4
Fleury, H.5
Kiuchi, M.6
-
23
-
-
84859231900
-
2011 update of the drug resistance mutations in HIV-1
-
Johnson VA, Calvez V, Gunthard HF, Paredes R, Pillay D, Shafer R, et al. 2011 update of the drug resistance mutations in HIV-1. Top Antivir Med. 2011;19(4):156-64.
-
(2011)
Top Antivir Med
, vol.19
, Issue.4
, pp. 156-164
-
-
Johnson, V.A.1
Calvez, V.2
Gunthard, H.F.3
Paredes, R.4
Pillay, D.5
Shafer, R.6
-
24
-
-
34247898979
-
Human immunodeficiency virus type 1 drug resistance mutations in peripheral blood mononuclear cell proviral DNA among antiretroviral treatment-naive and treatment-experienced patients from Pune, India
-
Sen S, Tripathy SP, Chimanpure VM, Patil AA, Bagul RD, Paranjape RS. Human immunodeficiency virus type 1 drug resistance mutations in peripheral blood mononuclear cell proviral DNA among antiretroviral treatment-naive and treatment-experienced patients from Pune, India. AIDS Res Hum Retroviruses. 2007;23(4):489-97.
-
(2007)
AIDS Res Hum Retroviruses
, vol.23
, Issue.4
, pp. 489-497
-
-
Sen, S.1
Tripathy, S.P.2
Chimanpure, V.M.3
Patil, A.A.4
Bagul, R.D.5
Paranjape, R.S.6
-
25
-
-
84866619980
-
HIV-1 genome is often defective in PBMCs and rectal tissues after longterm HAART as a result of APOBEC3 editing and correlates with the size of reservoirs
-
Fourati S, Lambert-Niclot S, Soulie C, Malet I, Valantin MA, Descours B, et al. HIV-1 genome is often defective in PBMCs and rectal tissues after longterm HAART as a result of APOBEC3 editing and correlates with the size of reservoirs. J Antimicrob Chemother. 2012;67(10):2323-6.
-
(2012)
J Antimicrob Chemother
, vol.67
, Issue.10
, pp. 2323-2326
-
-
Fourati, S.1
Lambert-Niclot, S.2
Soulie, C.3
Malet, I.4
Valantin, M.A.5
Descours, B.6
-
26
-
-
80055103177
-
Interaction of reverse transcriptase (RT) mutations conferring resistance to lamivudine and etravirine: Effects on fitness and RT activity of human immunodeficiency virus type 1
-
Hu Z, Kuritzkes DR. Interaction of reverse transcriptase (RT) mutations conferring resistance to lamivudine and etravirine: effects on fitness and RT activity of human immunodeficiency virus type 1. J Virol. 2011;85(21):11309-14.
-
(2011)
J Virol
, vol.85
, Issue.21
, pp. 11309-11314
-
-
Hu, Z.1
Kuritzkes, D.R.2
-
27
-
-
84869868237
-
High viremia and low level of transmitted drug resistance in anti-retroviral therapy-naive perinatally-infected children and adolescents with HIV-1 subtype C infection
-
Neogi U, Sahoo PN, De Costa A, Shet A. High viremia and low level of transmitted drug resistance in anti-retroviral therapy-naive perinatally-infected children and adolescents with HIV-1 subtype C infection. BMC Infect Dis. 2012;12(1):317.
-
(2012)
BMC Infect Dis
, vol.12
, Issue.1
, pp. 317
-
-
Neogi, U.1
Sahoo, P.N.2
De Costa, A.3
Shet, A.4
-
28
-
-
79952616841
-
Suboptimal adherence associated with virological failure and resistance mutations to first-line highly active antiretroviral therapy (HAART) in Bangalore, India
-
Ekstrand ML, Shet A, Chandy S, Singh G, Shamsundar R, Madhavan V, et al. Suboptimal adherence associated with virological failure and resistance mutations to first-line highly active antiretroviral therapy (HAART) in Bangalore, India. Int Health. 2011;3(1):27-34.
-
(2011)
Int Health
, vol.3
, Issue.1
, pp. 27-34
-
-
Ekstrand, M.L.1
Shet, A.2
Chandy, S.3
Singh, G.4
Shamsundar, R.5
Madhavan, V.6
-
29
-
-
85027945429
-
Selection of nonnucleoside reverse transcriptase inhibitor-associated mutations in HIV-1 subtype C: Evidence of etravirine cross-resistance
-
Neogi U, Shet A, Shamsundar R, Ekstrand ML. Selection of nonnucleoside reverse transcriptase inhibitor-associated mutations in HIV-1 subtype C: evidence of etravirine cross-resistance. AIDS. 2011;25(8):1123-6.
-
(2011)
AIDS
, vol.25
, Issue.8
, pp. 1123-1126
-
-
Neogi, U.1
Shet, A.2
Shamsundar, R.3
Ekstrand, M.L.4
-
30
-
-
84863358812
-
Comparison of HIV-1 resistance profiles in plasma RNA versus PBMC DNA in heavily treated patients in Honduras, a resource-limited country
-
Diallo K, Murillo WE, de Rivera IL, Albert J, Zhou Z, Nkengasong J, et al. Comparison of HIV-1 resistance profiles in plasma RNA versus PBMC DNA in heavily treated patients in Honduras, a resource-limited country. Int J Mol Epidemiol Genet. 2012;3(1):56-65.
-
(2012)
Int J Mol Epidemiol Genet
, vol.3
, Issue.1
, pp. 56-65
-
-
Diallo, K.1
Murillo, W.E.2
De Rivera, I.L.3
Albert, J.4
Zhou, Z.5
Nkengasong, J.6
-
31
-
-
47249105176
-
Recommendations for surveillance of transmitted HIV drug resistance in countries scaling up antiretroviral treatment
-
Bennett DE, Myatt M, Bertagnolio S, Sutherland D, Gilks CF. Recommendations for surveillance of transmitted HIV drug resistance in countries scaling up antiretroviral treatment. Antivir Ther. 2008;13(Suppl 2):25-36.
-
(2008)
Antivir Ther
, vol.13
, Issue.SUPPL. 2
, pp. 25-36
-
-
Bennett, D.E.1
Myatt, M.2
Bertagnolio, S.3
Sutherland, D.4
Gilks, C.F.5
-
32
-
-
84873807864
-
Long-term efficacy of first line antiretroviral therapy in Indian HIV-1 infected patients: A longitudinal cohort study
-
Neogi U, Heylen E, Shet A, Chandy S, Shamsunder R, Sönnerborg A, et al. Long-term efficacy of first line antiretroviral therapy in Indian HIV-1 infected patients: a longitudinal cohort study. PLoS One. 2013;8(1):e55421.
-
(2013)
PLoS One
, vol.8
, Issue.1
-
-
Neogi, U.1
Heylen, E.2
Shet, A.3
Chandy, S.4
Shamsunder, R.5
Sönnerborg, A.6
|