Adventitious root induction in arabidopsis thaliana as a model for in vitro root organogenesis

Methods in Molecular Biology

Volumn 959, Issue , 2013, Pages 159-175

  Verstraeten, Inge ^a   Beeckman, Tom ^a   Geelen, Danny ^a  

^a NONE

Author keywords

Adventitious roots; Arabidopsis thaliana; Auxin; Micropropagation

Indexed keywords

AUXIN; ARABIDOPSIS PROTEIN;

ACCLIMATIZATION; ADVENTITIOUS ROOT; ARABIDOPSIS THALIANA; ARTICLE; CALLUS (PLANT); IN VITRO STUDY; NONHUMAN; PH; PLANT CELL; PLANT GROWTH; PLANT ORGANOGENESIS; PRIORITY JOURNAL; SCANNING ELECTRON MICROSCOPY; SPECIES; TEMPERATURE; ARABIDOPSIS; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; ORGANOGENESIS; PHYSIOLOGY; PLANT ROOT;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; ORGANOGENESIS; PLANT ROOTS;

MLCS; MLOWN;

EID: 84879127161     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-62703-221-6_10     Document Type: Article

References (74)

1. De Klerk GJ, Van der Krieken W, De Jong JC (1999) Review-the formation of adventitious roots: new concepts, new possibilities. In Vitro Cell Dev Biol Plant 35:189-199
2. Geiss G, Gutierrez L, Bellini C (2009) Adventitious root formation: new insights and perspectives. In: Beeckman T (ed) Root development. Wiley-Blackwell, Hoboken, pp 127-156
3. Golz JF, Hudson A (2002) Signalling in plant lateral organ development. Plant Cell 14:S277-S288
4. Sultan SE (2000) Phenotypic plasticity for plant development, function and life history. Trends Plant Sci 5:537-542
5. De Smet I, Vanneste S, Inze D, Beeckman T (2006) Lateral root initiation or the birth of a new meristem. Plant Mol Biol 60:871-887
6. Peret B, De Rybel B, Casimiro I, Benkova E, Swarup R, Laplaze L, Beeckman T, Bennett MJ (2009) Arabidopsis lateral root development: an emerging story. Trends Plant Sci 14:399-408
7. Haissig BE, Davis TD, Riemenschneider DE (1992) Researching the controls of adventitious rooting. Physiol Plant 84:310-317
8. De Klerk GJ, Keppel M, Terbrugge J, Meekes H (1995) Timing of the phases in adventitious root formation in apple microcuttings. J Exp Bot 46:965-972
9. Smolka A, Welander M, Olsson P, Holefors A, Zhu LH (2009) Involvement of the ARRO-1 gene in adventitious root formation in apple. Plant Sci 177:710-715
10. Fett-Neto AG, Fett JP, Goulart LWV, Pasquali G, Termignon RR, Ferreira AG (2001) Distinct effects of auxin and light on adventitious root development in Eucalyptus saligna and Eucalyptus globulus . Tree Physiol 21:457-464
11. da Rocha Correa LD, Fett-Neto AG (2004) Effects of temperature on adventitious root development in microcuttings of Eucalyptus saligna Smith and Eucalyptus globulus Labill. J Therm Biol 29:315-324
12. Foga̧a CM, Fett-Neto AG (2005) Role of auxin and its modulators in the adventitious rooting of Eucalyptus species differing in recalcitrance. Plant Growth Regul 45:1-10
13. Greenwood MS, Weir RJ (1995) Genetic variation in rooting ability of Loblolly pine cuttings- effects of auxin and family on rooting by hypocotyl cuttings. Tree Physiol 15:41-45
14. Hamann A (1998) Adventitious root formation in cuttings of loblolly pine ( Pinus taeda L.): developmental sequence and effects of maturation. Trees-Struct Funct 12:175-180
15. Rasmussen A, Hunt MA (2010) Ageing delays the cellular stages of adventitious root formation in pine. Aust For 73:41-46
16. Butler ED, Gallagher TF (1999) Isolation and characterization of a cDNA encoding a novel 2-oxoacid-dependent dioxygenase which is up-regulated during adventitious root formation in apple ( Malus domestica "Jork 9") stem discs. J Exp Bot 50:551-552
17. Brinker M, van Zyl L, Liu WB, Craig D, Sederoff RR, Clapham DH, von Arnold S (2004) Microarray analyses of gene expression during adventitious root development in Pinus contorta . Plant Physiol 135:1526-1539
18. Pagnussat GC, Lanteri ML, Lombardo MC, Lamattina L (2004) Nitric oxide mediates the indole acetic acid induction activation of a mitogen-activated protein kinase cascade involved in adventitious root development. Plant Physiol 135:279-286
19. Ricci A, Rolli E, Dramis L, Diaz-Sala C (2008) N,N c -bis-(2,3- methylenedioxyphenyl)urea and N,N c -bis-(3,4-methylenedioxyphenyl)urea enhance adventitious rooting in Pinus radiata and affect expression of genes induced during adventitious rooting in the presence of exogenous auxin. Plant Sci 175:356-363
20. Velasco R, Zharkikh A, Affourtit J et al (2010) The genome of the domesticated apple ( Malus × domestica Borkh). Nat Genet 42:833-839
21. Tuskan GA, DiFazio S, Jansson S et al (2006) The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science 313: 1596-1604
22. Falasca G, Zaghi D, Possenti M, Altamura MM (2004) Adventitious root formation in Arabidopsis thaliana thin cell layers. Plant Cell Rep 23:17-25
23. da Rocha Correa L, Troleis J, Mastroberti AA, Mariath JEA, Fett-Netto AG (2012) Distinct modes of adventitious rooting in Arabidopsis thaliana . Plant Biol 14:100-109
24. Ozawa S, Yasutani I, Fukuda H, Komamine A, Sugiyama M (1998) Organogenic responses in tissue culture of srd mutants of Arabidopsis thaliana . Development 125:135-142
25. Falasca G, Altamura MM (2003) Histological analysis of adventitious rooting in Arabidopsis thaliana (L.) Heynh seedlings. Plant Biosyst 137:265-273
26. Sorin C, Bussell JD, Camus I, Ljung K, Kowalczyk M, Geiss G, McKhann H, Garcion C, Vaucheret H, Sandberg G, Bellini C (2005) Auxin and light control of adventitious rooting in Arabidopsis require ARGONAUTE1. Plant Cell 17:1343-1359
27. Sorin C, Negroni L, Balliau T, Corti H, Jacquemot MP, Davanture M, Sandberg G, Zivy M, Bellini C (2006) Proteomic analysis of different mutant genotypes of Arabidopsis led to the identi fi cation of 11 proteins correlating with adventitious root development. Plant Physiol 140:349-364
28. Gutierrez L, Bussell JD, Pacurar DI, Schwambach J, Pacurar M, Bellini C (2009) Phenotypic plasticity of adventitious rooting in Arabidopsis is controlled by complex regulation of auxin response factor transcripts and microRNA abundance. Plant Cell 21:3119-3132
29. King JJ, Stimart DP (1998) Genetic analysis of variation for auxin-induced adventitious root formation among eighteen ecotypes of Arabidopsis thaliana L-Heynh. J Hered 89:481-487
30. Altamura MM, Possenti M, Matteucci A, Baima S, Ruberti I, Morelli G (2001) Development of the vascular system in the in fl orescence stem of Arabidopsis . New Phytol 151:381-389
31. Oh S, Park S, Han KH (2003) Transcriptional regulation of secondary growth in Arabidopsis thaliana. J Exp Bot 54:2709-2722
32. Ko JH, Han KH, Park S, Yang JM (2004) Plant body weight-induced secondary growth in Arabidopsis and its transcription phenotype revealed by whole-transcriptome pro fi ling. Plant Physiol 135:1069-1083
33. Ludwig-Müller J, Vertocnik A, Town CD (2005) Analysis of indole-3-butyric acidinduced adventitious root formation on Arabidopsis stem segments. J Exp Bot 56: 2095-2105
34. Dovzhenko A, Dal Bosco C, Meurer J, Koop HU (2003) Ef fi cient regeneration from cotyledon protoplasts in Arabidopsis thaliana . Protoplasma 222:107-111
35. Velazquez I, Valencia S, Lopez-Lera A, de la Pena A, Candela M (2004) Analysis of natural allelic variation in in vitro organogenesis of Arabidopsis thaliana . Euphytica 137:73-79
36. Passardi F, Dobias J, Valerio L, Guimil S, Penel C, Dunand C (2007) Morphological and physiological traits of three major Arabidopsis thaliana accessions. J Plant Physiol 164: 980-992
37. Chateau S, Sangwan RS, Sangwan-Norreel BS (2000) Competence of Arabidopsis thaliana genotypes and mutants for Agrobacterium tumefaciens -mediated gene transfer: role of phytohormones. J Exp Bot 51:1961-1968
38. Marion J, Bach L, Bellec Y, Meyer C, Gissot L, Faure JD (2008) Systematic analysis of protein subcellular localization and interaction using high-throughput transient transformation of Arabidopsis seedlings. Plant J 56:169-179
39. Alonso-Blanco C, Blankestijn-de Vries H, Hanhart CJ, Koornneef M (1999) Natural allelic variation at seed size loci in relation to other life history traits of Arabidopsis thaliana . Proc Natl Acad Sci USA 96: 4710-4717
40. Maloof JN, Borevitz JO, Dabi T, Lutes J, Nehring RB, Redfern JL, Trainer GT, Wilson JM, Asami T, Berry CC, Weigel D, Chory J (2001) Natural variation in light sensitivity of Arabidopsis . Nat Genet 29:441-446
41. Delker C, Poschl Y, Raschke A, Ullrich K, Ettingshausen S, Hauptmann V, Grosse I, Quint M (2010) Natural variation of transcriptional auxin response networks in Arabidopsis thaliana . Plant Cell 22:2184-2200
42. Konishi M, Sugiyama M (2003) Genetic analysis of adventitious root formation with a novel series of temperature-sensitive mutants of Arabidopsis thaliana . Development 130:5637-5647
43. Kevers C, Hausman JF, Faivre-Rampant O, Dommes J, Gaspar T (2009). What we have learned about the physiology of in vitro adventitious rooting of woody plants and how it relates to improvements in the practice. In: Niemi K and Scagel C (Eds) Adventitious root formation of forest trees and horticultural plants - from genes to applications. Research Signpost, Kerala, pp 209-225
44. Kuroha T, Satoh S (2007) Involvement of cytokinins in adventitious and lateral root formation. Plant Root 1:27-33
45. Negi S, Sukumar P, Liu X, Cohen JD, Muday GK (2010) Genetic dissection of the role of ethylene in regulating auxin-dependent lateral and adventitious root formation in tomato. Plant J 61:3-15
46. Gou JQ, Strauss SH, Tsai CJ, Fang K, Chen YR, Jiang XN, Busov VB (2010) Gibberellins regulate lateral root formation in Populus through interactions with auxin and other hormones. Plant Cell 22:623-639
47. Signora L, De Smet I, Foyer CH, Zhang HM (2001) ABA plays a central role in mediating them regulatory effects of nitrate on root branching in Arabidopsis . Plant J 28:655-662
48. De Smet I, Signora L, Beeckman T, Inze D, Foyer CH, Zhang HM (2003) An abscisic acid-sensitive checkpoint in lateral root development of Arabidopsis . Plant J 33:543-555
49. De Smet I, Zhang HM, Inze D, Beeckman T (2006) A novel role for abscisic acid emerges from underground. Trends Plant Sci 11:434-439
50. Fattorini L, Falasca G, Kevers C, Rocca LM, Zadra C, Altamura MM (2009) Adventitious rooting is enhanced by methyl jasmonate in tobacco thin cell layers. Planta 231:155-168
51. Pagnussat GC, Lanteri ML, Lamattina L (2003) Nitric oxide and cyclic GMP are messengers in the indole acetic acid-induced adventitious rooting process. Plant Physiol 132:1241-1248
52. Campos-Cuevas JC, Pelagio-Flores R, Raya- Gonzalez J, Mendez-Bravo A, Ortiz-Castro R, Lopez-Bucio J (2008) Tissue culture of Arabidopsis thaliana explants reveals a stimulatory effect of alkamides on adventitious root formation and nitric oxide accumulation. Plant Sci 174:165-173
53. Li SW, Xue LG, Xu SJ, Feng HY, An LZ (2009) Mediators, genes and signaling in adventitious rooting. Bot Rev 75:230-247
54. Nag S, Saha K, Choudhuri MA (2001) Role of auxin and polyamines in adventitious root formation in relation to changes in compounds involved in rooting. J Plant Growth Regul 20:182-194
55. Curir P, Vansumere CF, Termini A, Barthe P, Marchesini A, Dolci M (1990) Flavonoid accumulation is correlated with adventitious roots formation in Eucalyptus Gunni Hook micropropagated through axillary bud stimulation. Plant Physiol 92:1148-1153
56. Tan X, Calderon-Villalobos LIA, Sharon M, Zheng CX, Robinson CV, Estelle M, Zheng N (2007) Mechanism of auxin perception by the TIR1 ubiquitin ligase. Nature 446:640-645
57. Calderon-Villalobos LI, Tan X, Zheng N, Estelle M (2010) Auxin perception-structural insights. Cold Spring Harb Perspect Biol 2(7):a005546
58. Dharmasiri N, Dharmasiri S, Estelle M (2005) The F-box protein TIR1 is an auxin receptor. Nature 435:441-445
59. Kepinski S, Leyser O (2005) The Arabidopsis F-box protein TIR1 is an auxin receptor. Nature 435:446-451
60. Badescu GO, Napier RM (2006) Receptors for auxin: will it all end in TIRs? Trends Plant Sci 11:217-223
61. Spartz AK, Gray WM (2008) Plant hormone receptors: new perceptions. Genes Dev 22:2139-2148
62. Hansen J (1975) Light dependent promotion and inhibition of adventitious root formatioin by gibberellic acid. Planta 123: 203-205
63. Niemi K, Julkunen-Tiitto R, Tegelberg R, Haggman H (2005) Light sources with different spectra affect root and mycorrhiza formation in Scots pine in vitro . Tree Physiol 25:123-128
64. Kiss JZ, Miller KM, Ogden LA, Roth KK (2002) Phototropism and gravitropism in lateral roots of Arabidopsis . Plant Cell Physiol 43:35-43
65. Chen XM (2009) Small RNAs and their roles in plant development. In: Schekman R (Ed) Annual review of cell and developmental biology, vol 25. Annual Reviews, Palo Alto, pp 21-44
66. He GM, Elling AA, Deng XW (2011) The epigenome and plant development. In: Merchant SS, Briggs WR, Ort D (eds) Annual review of plant biology, vol 62. Annual Reviews, Palo Alto, pp 411-435
67. Rubio-Somoza I, Weigel D (2011) MicroRNA networks and developmental plasticity in plants. Trends Plant Sci 16:258-264
68. Diaz-Sala C, Garrido G, Sabater B (2002) Age-related loss of rooting capability in Arabidopsis thaliana and its reversal by peptides containing the Arg-Gly-Asp (RGD) motif. Physiol Plant 114:601-607
69. Diaz-Sala C, Hutchison KW, Goldfarb B, Greenwood MS (1996) Maturation-related loss in rooting competence by loblolly pine stem cuttings: the role of auxin transport, metabolism and tissue sensitivity. Physiol Plant 97:481-490
70. Poethig RS (2003) Phase change and the regulation of developmental timing in plants. Science 301:334-336
71. Vidal N, Arellano G, San-Jose MC, Vieitez AM, Ballester A (2003) Developmental stages during the rooting of in-vitro -cultured Quercus robur shoots from material of juvenile and mature origin. Tree Physiol 23:1247-1254
72. Boerjan W, Cervera MT, Delarue M, Beeckman T, Dewitte W, Bellini C, Caboche M, Vanonckelen H, Vanmontagu M, Inze A (1995) Superroot, a recessive mutation in Arabidopsis , confers auxin overproduction. Plant Cell 7:1405-1419
73. Ruegger M, Dewey E, Gray WM, Hobbie L, Turner J, Estelle M (1998) The TIR1 protein of Arabidopsis functions in auxin response and is related to human SKP2 and yeast Grr1p. Genes Dev 12:198-207
74. Casimiro I, Marchant A, Bhalerao RP, Beeckman T, Dhooge S, Swarup R, Graham N, Inze D, Sandberg G, Casero PJ, Bennett M (2001) Auxin transport promotes Arabidopsis lateral root initiation. Plant Cell 13:843-852