Global gene expression analysis of term amniotic fluid cell-free fetal RNA

Obstetrics and Gynecology

Volumn 121, Issue 6, 2013, Pages 1248-1254

  Hui, Lisa ^a   Wick, Heather C ^a   Edlow, Andrea G ^a   Cowan, Janet M ^a   Bianchi, Diana W ^a  

^a not available

Author keywords

[No Author keywords available]

Indexed keywords

PROSTAGLANDIN; RNA; TRANSCRIPTOME;

ADIPOGENESIS; ADULT; AMNIOCENTESIS; AMNION; AMNION CELL; AMNION FLUID; BRAIN; BREATHING; CARBOHYDRATE METABOLISM; CELL FREE SYSTEM; CELL FUNCTION; CESAREAN SECTION; CONFERENCE PAPER; CONTROLLED STUDY; DIGESTION; DOWN REGULATION; EMBRYO; EMBRYO CELL; FEMALE; FETUS DEVELOPMENT; GENE EXPRESSION; GESTATIONAL AGE; HUMAN; HUMAN CELL; INFLAMMATION; KARYOTYPE; KIDNEY; MICROARRAY ANALYSIS; MOLECULAR DYNAMICS; NERVE CELL; PERINATAL PERIOD; PRIORITY JOURNAL; PROSPECTIVE STUDY; PROSTAGLANDIN SYNTHESIS; RNA ANALYSIS; SALIVARY GLAND; SECOND TRIMESTER PREGNANCY; TRACHEA; UPREGULATION;

EID: 84879098703     PISSN: 00297844     EISSN: 1873233X     Source Type: Journal    
DOI: 10.1097/AOG.0b013e318293d70b     Document Type: Conference Paper

References (25)

1. Hui L, Slonim DK, Wick HC, Johnson KL, Bianchi DW. The amniotic fluid transcriptome: a source of novel information about human fetal development. Obstet Gynecol 2012;119:111-8.
2. Slonim DK, Koide K, Johnson KL, Tantravahi U, Cowan JM, Jarrah Z, et al. Functional genomic analysis of amniotic fluid cell-free mRNA suggests that oxidative stress is significant in Down syndrome fetuses. Proc Natl Acad Sci U S A 2009;106:9425-9.
3. Koide K, Slonim DK, Johnson KL, Tantravahi U, Cowan JM, Bianchi DW. Transcriptomic analysis of cell-free fetal RNA suggests a specific molecular phenotype in trisomy 18. Hum Genet 2011;129:295-305.
4. Hui L, Slonim DK, Wick HC, Johnson KL, Koide K, Bianchi DW. Novel neurodevelopmental information revealed in amniotic fluid supernatant transcripts from fetuses with trisomies 18 and 21. Hum Genet 2012;131:1751-9.
5. Hui L, Bianchi DW. Cell-free fetal nucleic acids in amniotic fluid. Hum Reprod Update 2011;17:362-71.
6. Tyden O, Bergstrom S, Nilsson BA. Origin of amniotic fluid cells in mid-trimester pregnancies. Br J Obstet Gynaecol 1981;88:278-86.
7. Jezierski A, Gruslin A, Tremblay R, Ly D, Smith C, Turksen K, et al. Probing stemness and neural commitment in human amniotic fluid cells. Stem Cell Rev 2010;6:199-214.
8. Larrabee PB, Johnson KL, Lai C, Ordovas J, Cowan JM, Tantravahi U, et al. Global gene expression analysis of the living human fetus using cell-free messenger RNA in amniotic fluid. JAMA 2005;293:836-42.
9. Underwood MA, Gilbert WM, Sherman MP. Amniotic fluid: not just fetal urine anymore. J Perinatol 2005;25:341-8.
10. Dietz JA, Johnson KL, Massingham LJ, Schaper J, Horlitz M, Cowan J, et al. Comparison of extraction techniques for amniotic fluid supernatant demonstrates improved yield of cell-free fetal RNA. Prenat Diagn 2011;31:598-9.
11. Gentleman R. Reproducible research: a bioinformatics case study. Stat Appl Genet Mol Biol 2005;4:Article 2.
12. Benjamini Y, Hochberg Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc Series B Stat Methodol 1995;57:289-300.
13. Su AI, Wiltshire T, Batalov S, Lapp H, Ching KA, Block D, et al. A gene atlas of the mouse and human protein-encoding transcriptomes. Proc Natl Acad Sci U S A 2004;101:6062-7.
14. Pennings JL, Kuc S, Rodenburg W, Koster MP, Schielen PC, de Vries A. Integrative data mining to identify novel candidate serum biomarkers for pre-eclampsia screening. Prenat Diagn 2011;31:1153-9.
15. Dennis G Jr, Sherman BT, Hosack DA, Yang J, Gao W, Lane HC, et al. DAVID: database for annotation, visualization, and integrated discovery. Genome Biol 2003;4:P3.
16. Hosack DA, Dennis G Jr, Sherman BT, Lane HC, Lempicki RA. Identifying biological themes within lists of genes with EASE. Genome Biol 2003;4:R70.
17. Romero R, Espinoza J, Gotsch F, Kusanovic JP, Friel LA, Erez O, et al. The use of high-dimensional biology (genomics, transcriptomics, proteomics, and metabolomics) to understand the preterm parturition syndrome. BJOG 2006;113(suppl 3):118-35.
18. Buhimschi IA, Buhimschi CS. Proteomics of the amniotic fluid in assessment of the placenta. Relevance for preterm birth. Placenta 2008;29(suppl A):S95-101.
19. Michaels JE, Dasari S, Pereira L, Reddy AP, Lapidus JA, Lu X, et al. Comprehensive proteomic analysis of the human amniotic fluid proteome: gestational age-dependent changes. J Proteome Res 2007;6:1277-85.
20. Cohn BR, Fukuchi EY, Joe BN, Swanson MG, Kurhanewicz J, Yu J, et al. Calculation of gestational age in late second and third trimesters by ex vivo magnetic resonance spectroscopy of amniotic fluid. Am J Obstet Gynecol 2010;203:76.e1-76.e10.
21. Rogers S, Witz G, Anwar M, Hiatt M, Hegyi T. Antioxidant capacity and oxygen radical diseases in the preterm newborn. Arch Pediatr Adolesc Med 2000;154:544-8.
22. Romero R, Espinoza J, Goncalves LF, Kusanovic JP, Friel LA, Nien JK. Inflammation in preterm and term labour and delivery. Semin Fetal Neonatal Med 2006;11:317-26.
23. Condon JC, Jeyasuria P, Faust JM, Mendelson CR. Surfactant protein secreted by the maturing mouse fetal lung acts as a hormone that signals the initiation of parturition. Proc Natl Acad Sci U S A 2004;101:4978-83.
24. Golightly E, Jabbour HN, Norman JE. Endocrine immune interactions in human parturition. Mol Cell Endocrinol 2011;335:52-9.
25. Pavlidis P, Li Q, Noble WS. The effect of replication on gene expression microarray experiments. Bioinformatics 2003;19:1620-7. and Human Development and Human Development