-
1
-
-
62549087008
-
What do natural antisense transcripts regulate?
-
Werner, A., M. Carlile, and D. Swan. 2009. What do natural antisense transcripts regulate? RNA Biol. 6: 43-48.
-
(2009)
RNA Biol.
, vol.6
, pp. 43-48
-
-
Werner, A.1
Carlile, M.2
Swan, D.3
-
2
-
-
60549107869
-
Wrap53, a natural p53 antisense transcript required for p53 induction upon DNA damage
-
Mahmoudi, S., S. Henriksson, M. Corcoran, C. Méndez-Vidal, K. G.Wiman, and M. Farnebo. 2009. Wrap53, a natural p53 antisense transcript required for p53 induction upon DNA damage. Mol. Cell 33: 462-471.
-
(2009)
Mol. Cell
, vol.33
, pp. 462-471
-
-
Mahmoudi, S.1
Henriksson, S.2
Corcoran, M.3
Méndez-Vidal, C.4
Wiman, K.G.5
Farnebo, M.6
-
3
-
-
34447543034
-
Hypoxia-inducible expression of a natural cis-antisense transcript inhibits endothelial nitric-oxide synthase
-
DOI 10.1074/jbc.M608318200
-
Fish, J. E., C. C. Matouk, E. Yeboah, S. C. Bevan, M. Khan, K. Patil, M. Ohh, and P. A. Marsden. 2007. Hypoxia-inducible expression of a natural cis-antisense transcript inhibits endothelial nitric-oxide synthase. J. Biol. Chem. 282: 15652-15666. (Pubitemid 47093264)
-
(2007)
Journal of Biological Chemistry
, vol.282
, Issue.21
, pp. 15652-15666
-
-
Fish, J.E.1
Matouk, C.C.2
Yeboah, E.3
Bevan, S.C.4
Khan, M.5
Patil, K.6
Ohh, M.7
Marsden, P.A.8
-
4
-
-
0037673656
-
Antisense transcripts with FANTOM2 clone set and their implications for gene regulation
-
DOI 10.1101/gr.982903
-
Kiyosawa, H., I. Yamanaka, N. Osato, S. Kondo, Y. Hayashizaki, RIKEN GER Group, and GSL Members. 2003. Antisense transcripts with FANTOM2 clone set and their implications for gene regulation. Genome Res. 13(6B): 1324-1334. (Pubitemid 36827228)
-
(2003)
Genome Research
, vol.13
, Issue.6 B
, pp. 1324-1334
-
-
Kiyosawa, H.1
Yamanaka, I.2
Osato, N.3
Kondo, S.4
Arakawa, T.5
Carninci, P.6
Kawai, J.7
Hayashizaki, Y.8
-
5
-
-
19444377759
-
Transcriptional interference-a crash course
-
Shearwin, K. E., B. P. Callen, and J. B. Egan. 2005. Transcriptional interference-a crash course. Trends Genet. 21: 339-345.
-
(2005)
Trends Genet.
, vol.21
, pp. 339-345
-
-
Shearwin, K.E.1
Callen, B.P.2
Egan, J.B.3
-
6
-
-
0642275613
-
aHIF but not HIF-1α transcript is a poor prognostic marker in human breast cancer
-
Cayre, A., F. Rossignol, E. Clottes, and F. Penault-Llorca. 2003. aHIF but not HIF-1α transcript is a poor prognostic marker in human breast cancer. Breast Cancer Res. 5: R223-R230.
-
(2003)
Breast Cancer Res.
, vol.5
-
-
Cayre, A.1
Rossignol, F.2
Clottes, E.3
Penault-Llorca, F.4
-
7
-
-
0035943347
-
nrb-containing complex mediates the nuclear retention of promiscuously A-to-I edited RNAs
-
DOI 10.1016/S0092-8674(01)00466-4
-
Zhang, Z., and G. G. Carmichael. 2001. The fate of dsRNA in the nucleus: a p54 (nrb)-containing complex mediates the nuclear retention of promiscuously A-to-I edited RNAs. Cell 106: 465-475. (Pubitemid 32786990)
-
(2001)
Cell
, vol.106
, Issue.4
, pp. 465-475
-
-
Zhang, Z.1
Carmichael, G.G.2
-
8
-
-
0034960390
-
Chemistry and biochemistry of 29,59-oligoadenylate-based antisense strategy
-
Adah, S. A., S. F. Bayly, H. Cramer, R. H. Silverman, and P. F. Torrence. 2001. Chemistry and biochemistry of 29,59-oligoadenylate-based antisense strategy. Curr. Med. Chem. 8: 1189-1212. (Pubitemid 32655077)
-
(2001)
Current Medicinal Chemistry
, vol.8
, Issue.10
, pp. 1189-1212
-
-
Adah, S.A.1
Bayly, S.F.2
Cramer, H.3
Silverman, R.H.4
Torrence, P.F.5
-
9
-
-
4544305449
-
Effects of length and location on the cellular response to double-stranded RNA
-
DOI 10.1128/MMBR.68.3.432-452.2004
-
Wang, Q., and G. G. Carmichael. 2004. Effects of length and location on the cellular response to double-stranded RNA. Microbiol. Mol. Biol. Rev. 68: 432-452. (Pubitemid 39238277)
-
(2004)
Microbiology and Molecular Biology Reviews
, vol.68
, Issue.3
, pp. 432-452
-
-
Wang, Q.1
Carmichael, G.G.2
-
10
-
-
47249107415
-
Processing of naturally occurring sense/antisense transcripts of the vertebrate Slc34a gene into short RNAs
-
Carlile, M., P. Nalbant, K. Preston-Fayers, G. S. McHaffie, and A. Werner. 2008. Processing of naturally occurring sense/antisense transcripts of the vertebrate Slc34a gene into short RNAs. Physiol. Genomics 34: 95-100.
-
(2008)
Physiol. Genomics
, vol.34
, pp. 95-100
-
-
Carlile, M.1
Nalbant, P.2
Preston-Fayers, K.3
McHaffie, G.S.4
Werner, A.5
-
11
-
-
44349130233
-
Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes
-
DOI 10.1038/nature06908, PII NATURE06908
-
Watanabe, T., Y. Totoki, A. Toyoda, M. Kaneda, S. Kuramochi-Miyagawa, Y. Obata, H. Chiba, Y. Kohara, T. Kono, T. Nakano, et al. 2008. Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes. Nature 453: 539-543. (Pubitemid 351733315)
-
(2008)
Nature
, vol.453
, Issue.7194
, pp. 539-543
-
-
Watanabe, T.1
Totoki, Y.2
Toyoda, A.3
Kaneda, M.4
Kuramochi-Miyagawa, S.5
Obata, Y.6
Chiba, H.7
Kohara, Y.8
Kono, T.9
Nakano, T.10
Surani, M.A.11
Sakaki, Y.12
Sasaki, H.13
-
12
-
-
69249217649
-
Regulatory roles of natural antisense transcripts
-
Faghihi, M. A., and C. Wahlestedt. 2009. Regulatory roles of natural antisense transcripts. Nat. Rev. Mol. Cell Biol. 10: 637-643.
-
(2009)
Nat. Rev. Mol. Cell Biol.
, vol.10
, pp. 637-643
-
-
Faghihi, M.A.1
Wahlestedt, C.2
-
13
-
-
0033103805
-
Impaired on/off regulation of TNF biosynthesis in mice lacking TNF AU- rich elements: Implications for joint and gut-associated immunopathologies
-
Kontoyiannis, D., M. Pasparakis, T. T. Pizarro, F. Cominelli, and G. Kollias. 1999. Impaired on/off regulation of TNF biosynthesis in mice lacking TNF AUrich elements: implications for joint and gut-associated immunopathologies. Immunity 10: 387-398. (Pubitemid 29165293)
-
(1999)
Immunity
, vol.10
, Issue.3
, pp. 387-398
-
-
Kontoyiannis, D.1
Pasparakis, M.2
Pizarro, T.T.3
Cominelli, F.4
Kollias, G.5
-
14
-
-
0025442212
-
Role of interleukin 1 in inflammatory bowel disease-enhanced production during active disease
-
Ligumsky, M., P. L. Simon, F. Karmeli, and D. Rachmilewitz. 1990. Role of interleukin 1 in inflammatory bowel disease-enhanced production during active disease. Gut 31: 686-689.
-
(1990)
Gut
, vol.31
, pp. 686-689
-
-
Ligumsky, M.1
Simon, P.L.2
Karmeli, F.3
Rachmilewitz, D.4
-
15
-
-
0029876121
-
Role of cytokines in rheumatoid arthritis
-
DOI 10.1146/annurev.immunol.14.1.397
-
Feldmann, M., F. M. Brennan, and R. N. Maini. 1996. Role of cytokines in rheumatoid arthritis. Annu. Rev. Immunol. 14: 397-440. (Pubitemid 26130190)
-
(1996)
Annual Review of Immunology
, vol.14
, pp. 397-440
-
-
Feldmann, M.1
Brennan, F.M.2
Maini, R.N.3
-
16
-
-
0030267786
-
Attenuation of Collagen-Induced Arthritis in 55-kDa TNF Receptor Type 1 (TNFR1)-IgG1-Treated and TNFR1-Deficient Mice
-
Mori, L., S. Iselin, G. De Libero, and W. Lesslauer. 1996. Attenuation of collagen-induced arthritis in 55-kDa TNF receptor type 1 (TNFR1)-IgG1-treated and TNFR1-deficient mice. J. Immunol. 157: 3178-3182. (Pubitemid 126450081)
-
(1996)
Journal of Immunology
, vol.157
, Issue.7
, pp. 3178-3182
-
-
Mori, L.1
Iselin, S.2
De Libero, G.3
Lesslauer, W.4
-
17
-
-
0032169765
-
Different roles of tumour necrosis factor a and interleukin 1 in murine streptococcal cell wall arthritis
-
DOI 10.1006/cyto.1998.0372
-
Kuiper, S., L. A. Joosten, A. M. Bendele, C. K. Edwards, III, O. J. Arntz, M. M. Helsen, F. A. Van de Loo, and W. B. Van den Berg. 1998. Different roles of tumour necrosis factor a and interleukin 1 in murine streptococcal cell wall arthritis. Cytokine 10: 690-702. (Pubitemid 28457113)
-
(1998)
Cytokine
, vol.10
, Issue.9
, pp. 690-702
-
-
Kuiper, S.1
Joosten, L.A.B.2
Bendele, A.M.3
Edwards III, C.K.4
Arntz, O.J.5
Helsen, M.M.A.6
Van De, L.F.A.J.7
Van Den, B.W.B.8
-
18
-
-
0027528798
-
Anticytokine strategies in the treatment of the systemic inflammatory response syndrome
-
DOI 10.1001/jama.269.14.1829
-
Dinarello, C. A., J. A. Gelfand, and S. M. Wolff. 1993. Anticytokine strategies in the treatment of the systemic inflammatory response syndrome. JAMA 269: 1829-1835. (Pubitemid 23097351)
-
(1993)
Journal of the American Medical Association
, vol.269
, Issue.14
, pp. 1829-1835
-
-
Dinarello, C.A.1
Gelfand, J.A.2
Wolff, S.M.3
-
19
-
-
0035104119
-
LPS induction of gene expression in human monocytes
-
DOI 10.1016/S0898-6568(00)00149-2, PII S0898656800001492
-
Guha, M., and N. Mackman. 2001. LPS induction of gene expression in human monocytes. Cell. Signal. 13: 85-94. (Pubitemid 32222977)
-
(2001)
Cellular Signalling
, vol.13
, Issue.2
, pp. 85-94
-
-
Guha, M.1
Mackman, N.2
-
20
-
-
34249077931
-
Cell surface 4-1BBL mediates sequential signaling pathways 'downstream' of TLR and is required for sustained TNF production in macrophages
-
DOI 10.1038/ni1471, PII NI1471
-
Kang, Y. J., S. O. Kim, S. Shimada, M. Otsuka, A. Seit-Nebi, B. S. Kwon, T. H. Watts, and J. Han. 2007. Cell surface 4-1BBL mediates sequential signaling pathways 'downstream' of TLR and is required for sustained TNF production in macrophages. Nat. Immunol. 8: 601-609. (Pubitemid 46785124)
-
(2007)
Nature Immunology
, vol.8
, Issue.6
, pp. 601-609
-
-
Kang, Y.J.1
Kim, S.O.2
Shimada, S.3
Otsuka, M.4
Seit-Nebi, A.5
Kwon, B.S.6
Watts, T.H.7
Han, J.8
-
21
-
-
47249144272
-
P2X7 receptor differentially couples to distinct release pathways for IL-1beta in mouse macrophage
-
Pelegrin, P., C. Barroso-Gutierrez, and A. Surprenant. 2008. P2X7 receptor differentially couples to distinct release pathways for IL-1beta in mouse macrophage. J. Immunol. 180: 7147-7157.
-
(2008)
J. Immunol.
, vol.180
, pp. 7147-7157
-
-
Pelegrin, P.1
Barroso-Gutierrez, C.2
Surprenant, A.3
-
22
-
-
0031884609
-
Regulation of p100 (NFKB2) expression in human monocytes in response to inflammatory mediators and lymphokines
-
DOI 10.1038/sj.leu.2400950
-
de Wit, H., W. H. Dokter, S. B. Koopmans, C. Lummen, M. van der Leij, J. W. Smit, and E. Vellenga. 1998. Regulation of p100 (NFKB2) expression in human monocytes in response to inflammatory mediators and lymphokines. Leukemia 12: 363-370. (Pubitemid 28138221)
-
(1998)
Leukemia
, vol.12
, Issue.3
, pp. 363-370
-
-
De Wit, H.1
Dokter, W.H.A.2
Koopmans, S.B.3
Lummen, C.4
Van Der, L.M.5
Smit, J.W.6
Vellenga, E.7
-
23
-
-
72949090150
-
p52-Independent nuclear translocation of RelB promotes LPS-induced attachment
-
Saito, T., C. Y. Sasaki, L. J. Rezanka, P. Ghosh, and D. L. Longo. 2010. p52-Independent nuclear translocation of RelB promotes LPS-induced attachment. Biochem. Biophys. Res. Commun. 391: 235-241.
-
(2010)
Biochem. Biophys. Res. Commun.
, vol.391
, pp. 235-241
-
-
Saito, T.1
Sasaki, C.Y.2
Rezanka, L.J.3
Ghosh, P.4
Longo, D.L.5
-
24
-
-
78650656888
-
Myeloid-specific GPCR kinase-2 negatively regulates NF-κB1p105-ERK pathway and limits endotoxemic shock in mice
-
Patial, S., Y. Saini, S. Parvataneni, D. M. Appledorn, G. W. Dorn, II, J. J. Lapres, A. Amalfitano, P. Senagore, and N. Parameswaran. 2011. Myeloid-specific GPCR kinase-2 negatively regulates NF-κB1p105-ERK pathway and limits endotoxemic shock in mice. J. Cell. Physiol. 226: 627-637.
-
(2011)
J. Cell. Physiol.
, vol.226
, pp. 627-637
-
-
Patial, S.1
Saini, Y.2
Parvataneni, S.3
Appledorn, D.M.4
Dorn II, G.W.5
Lapres, J.J.6
Amalfitano, A.7
Senagore, P.8
Parameswaran, N.9
-
25
-
-
17444369067
-
Remote control of gene transcription
-
DOI 10.1093/hmg/ddi104
-
West, A. G., and P. Fraser. 2005. Remote control of gene transcription. Hum. Mol. Genet. 14(Spec No 1): R101-R111. (Pubitemid 40542626)
-
(2005)
Human Molecular Genetics
, vol.14
, Issue.SPEC. ISS. 1
-
-
West, A.G.1
Fraser, P.2
-
26
-
-
11144339384
-
Long-range control of gene expression: Emerging mechanisms and disruption in disease
-
DOI 10.1086/426833
-
Kleinjan, D. A., and V. van Heyningen. 2005. Long-range control of gene expression: emerging mechanisms and disruption in disease. Am. J. Hum. Genet. 76: 8-32. (Pubitemid 40023762)
-
(2005)
American Journal of Human Genetics
, vol.76
, Issue.1
, pp. 8-32
-
-
Kleinjan, D.A.1
Van Heyningen, V.2
-
27
-
-
39549087223
-
Natural antisense transcript stabilizes inducible nitric oxide synthase messenger RNA in rat hepatocytes
-
DOI 10.1002/hep.22036
-
Matsui, K., M. Nishizawa, T. Ozaki, T. Kimura, I. Hashimoto, M. Yamada, M. Kaibori, Y. Kamiyama, S. Ito, and T. Okumura. 2008. Natural antisense transcript stabilizes inducible nitric oxide synthase messenger RNA in rat hepatocytes. Hepatology 47: 686-697. (Pubitemid 351280737)
-
(2008)
Hepatology
, vol.47
, Issue.2
, pp. 686-697
-
-
Matsui, K.1
Nishizawa, M.2
Ozaki, T.3
Kimura, T.4
Hashimoto, I.5
Yamada, M.6
Kaibori, M.7
Kamiyama, Y.8
Ito, S.9
Okumura, T.10
-
28
-
-
0026546877
-
A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands
-
Frommer, M., L. E. McDonald, D. S. Millar, C. M. Collis, F. Watt, G. W. Grigg, P. L. Molloy, and C. L. Paul. 1992. A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands. Proc. Natl. Acad. Sci. USA 89: 1827-1831.
-
(1992)
Proc. Natl. Acad. Sci. USA
, vol.89
, pp. 1827-1831
-
-
Frommer, M.1
McDonald, L.E.2
Millar, D.S.3
Collis, C.M.4
Watt, F.5
Grigg, G.W.6
Molloy, P.L.7
Paul, C.L.8
-
29
-
-
24144470824
-
Taking LSD 1 to a new high
-
Wysocka, J., T. A. Milne, and C. D. Allis. 2005. Taking LSD 1 to a new high. Cell 122: 654-658.
-
(2005)
Cell
, vol.122
, pp. 654-658
-
-
Wysocka, J.1
Milne, T.A.2
Allis, C.D.3
-
30
-
-
34250307630
-
The landscape of histone modifications across 1% of the human genome in five human cell lines
-
DOI 10.1101/gr.5704207
-
Koch, C. M., R. M. Andrews, P. Flicek, S. C. Dillon, U. Karaöz, G. K. Clelland, S. Wilcox, D. M. Beare, J. C. Fowler, P. Couttet, et al. 2007. The landscape of histone modifications across 1% of the human genome in five human cell lines. Genome Res. 17: 691-707. (Pubitemid 46919707)
-
(2007)
Genome Research
, vol.17
, Issue.6
, pp. 691-707
-
-
Koch, C.M.1
Andrews, R.M.2
Flicek, P.3
Dillon, S.C.4
Karaoz, U.5
Clelland, G.K.6
Wilcox, S.7
Beare, D.M.8
Fowler, J.C.9
Couttet, P.10
James, K.D.11
Lefebvre, G.C.12
Bruce, A.W.13
Dovey, O.M.14
Ellis, P.D.15
Dhami, P.16
Langford, C.F.17
Weng, Z.18
Birney, E.19
Carter, N.P.20
Vetrie, D.21
Dunham, I.22
more..
-
31
-
-
34249026300
-
High-Resolution Profiling of Histone Methylations in the Human Genome
-
DOI 10.1016/j.cell.2007.05.009, PII S0092867407006009
-
Barski, A., S. Cuddapah, K. Cui, T. Y. Roh, D. E. Schones, Z. Wang, G. Wei, I. Chepelev, and K. Zhao. 2007. High-resolution profiling of histone methylations in the human genome. Cell 129: 823-837. (Pubitemid 46802390)
-
(2007)
Cell
, vol.129
, Issue.4
, pp. 823-837
-
-
Barski, A.1
Cuddapah, S.2
Cui, K.3
Roh, T.-Y.4
Schones, D.E.5
Wang, Z.6
Wei, G.7
Chepelev, I.8
Zhao, K.9
-
32
-
-
77950841042
-
Transcriptional gene silencing through epigenetic changes mediated by non-coding RNAs
-
Malecová, B., and K. V. Morris. 2010. Transcriptional gene silencing through epigenetic changes mediated by non-coding RNAs. Curr. Opin. Mol. Ther. 12: 214-222.
-
(2010)
Curr. Opin. Mol. Ther.
, vol.12
, pp. 214-222
-
-
Malecová, B.1
Morris, K.V.2
-
33
-
-
70350020737
-
Reconstruction of Arabidopsis thaliana fully integrated small RNA pathway
-
Jamalkandi, S. A., and A. Masoudi-Nejad. 2009. Reconstruction of Arabidopsis thaliana fully integrated small RNA pathway. Funct. Integr. Genomics 9: 419-432.
-
(2009)
Funct. Integr. Genomics
, vol.9
, pp. 419-432
-
-
Jamalkandi, S.A.1
Masoudi-Nejad, A.2
-
34
-
-
79960098218
-
Overexpression of the natural antisense hypoxia-inducible factor-1α transcript is associated with malignant pheochromocytoma/paraganglioma
-
Span, P. N., J. U. Rao, S. B. Oude Ophuis, J. W. Lenders, F. C. Sweep, P. Wesseling, B. Kusters, F. H. van Nederveen, R. R. de Krijger, A. R. Hermus, and H. J. Timmers. 2011. Overexpression of the natural antisense hypoxia-inducible factor-1α transcript is associated with malignant pheochromocytoma/ paraganglioma. Endocr. Relat. Cancer 18: 323-331.
-
(2011)
Endocr. Relat. Cancer
, vol.18
, pp. 323-331
-
-
Span, P.N.1
Rao, J.U.2
Oude Ophuis, S.B.3
Lenders, J.W.4
Sweep, F.C.5
Wesseling, P.6
Kusters, B.7
Van Nederveen, F.H.8
De Krijger, R.R.9
Hermus, A.R.10
Timmers, H.J.11
-
35
-
-
78649964695
-
Identification of natural antisense transcripts involved in human colorectal cancer development
-
Kohno, K., M. Chiba, S. Murata, S. Pak, K. Nagai, M. Yamamoto, K. Yanagisawa, A. Kobayashi, H. Yasue, and N. Ohkohchi. 2010. Identification of natural antisense transcripts involved in human colorectal cancer development. Int. J. Oncol. 37: 1425-1432.
-
(2010)
Int. J. Oncol.
, vol.37
, pp. 1425-1432
-
-
Kohno, K.1
Chiba, M.2
Murata, S.3
Pak, S.4
Nagai, K.5
Yamamoto, M.6
Yanagisawa, K.7
Kobayashi, A.8
Yasue, H.9
Ohkohchi, N.10
|