Transcriptomic analysis of the interactions between Agaricus bisporus and Lecanicillium fungicola

Fungal Genetics and Biology

Volumn 55, Issue , 2013, Pages 67-76

  Bailey, Andy M ^a   Collopy, Patrick D ^a   Thomas, D John ^b   Sergeant, Martin R ^b   Costa, Ana M S B ^a,b   Barker, Gary L A ^a   Mills, Peter R ^b,c   Challen, Michael P ^b,d   Foster, Gary D ^a  

^a UNIVERSITY OF BRISTOL   (United Kingdom)

^b UNIVERSITY OF WARWICK   (United Kingdom)

^c HARPER ADAMS UNIVERSITY   (United Kingdom)

^d UNIVERSITY OF OXFORD   (United Kingdom)

Author keywords

Agaricus bisporus; Dry bubble disease; Lecanicillium fungicola; Verticillium fungicola

Indexed keywords

CHITIN DEACETYLASE; FUNGAL ENZYME; TRANSCRIPTOME; UNCLASSIFIED DRUG;

AGARICUS BISPORUS; ARTICLE; CONTROLLED STUDY; FUNGAL GENE; GENE EXPRESSION; GENE FUNCTION; GENE IDENTIFICATION; GENETIC TRANSCRIPTION; HOST PATHOGEN INTERACTION; LECANICILLIUM; LECANICILLIUM FUNGICOLA; NONHUMAN; PRIORITY JOURNAL; SUPPRESSION SUBTRACTIVE HYBRIDIZATION; UPREGULATION;

AGARICUS; FUNGAL PROTEINS; HYPOCREALES; MICROBIAL INTERACTIONS; NUCLEIC ACID HYBRIDIZATION; TRANSCRIPTOME;

AGARICUS BISPORUS; BASIDIOMYCOTA; FUNGI; LECANICILLIUM; VERTICILLIUM FUNGICOLA;

EID: 84879072627     PISSN: 10871845     EISSN: 10960937     Source Type: Journal    
DOI: 10.1016/j.fgb.2013.04.010     Document Type: Article

References (52)

1. Amey R.C., Athey-Pollard A., Burns C., Mills P.R., Bailey A., Foster G.D. PEG-mediated and Agrobacterium-mediated transformation in the mycopathogen Verticillium fungicola. Mycol. Res. 2002, 106:4-11.
2. Amey R.C., Mills P.R., Bailey A., Foster G.D. Investigating the role of a Verticillium fungicola beta-1,6-glucanase during infection of Agaricus bisporus using targeted gene disruption. Fungal Genet. Biol. 2003, 39:264-275.
3. Amey R.C., Athey-Pollard A., Mills P.R., Foster G.D., Bailey A. Investigations into the taxonomy of the mushroom pathogen Verticillium fungicola and its relatives based on sequence analysis of Nitrate Reductase and ITS regions. Microbiology+ 2007, 76:757-768.
4. Annon EFSA J. 2011, 9:2323.
5. Berendsen R.L., Baars J.J.P., Kalkhove S.I.C., Lugones L.G., Wösten H.A.B., Bakker P.A.H.M. Lecanicillium fungicola: causal agent of dry bubble disease in white-button mushroom. Mol. Plant Pathol. 2010, 11:585-595.
6. Berendsen R.L., Kalkhove S.I.C., Lugones L.G., Wösten H.A.B., Bakker P.A.H.M. Germination of Lecanicillium fungicola in the mycosphere of Agaricus bisporus. Environ. Microbiol. Rep. 2012, 4:227-233.
7. Bernado D., Cabo A., Novaes-Ledieu M., Mendoza C.G. Verticillium disease or "dry bubble" of cultivated mushrooms: the Agaricus bisporus lectin recognises and binds the Verticillium fungicola cell wall galactomannan. Can. J. Microbiol. 2004, 50:729-735.
8. Bonnen A.M., Hopkins C. Fungicide resistance and population variation in Verticillium fungicola, a pathogen of the button mushroom, Agaricus bisporus. Mycol. Res. 1997, 101:89-96.
9. Burns A.C., Leach K.M., Elliott T.J., Challen M.P., Foster G.D., Bailey A.M. Evaluation of Agrobacterium-mediated transformation of Agaricus bisporus using a range of promoters linked to hygromycin resistance. Mol. Biotechnol. 2006, 32:129-138.
10. Burton, K., Challen, M., Elliot, T., Sreenivasaprasad, S., Eastwood, D., Molloy, S., 2006. Selective Expression in Filamentous fungi. Patent PCT/GB03/04716.
11. Calonje M., Mendoza C.G., Galan B., Novaes-Ledieu M. Enzymic activity of the mycoparasite Verticillium fungicola on Agaricus bisporus fruit body cell walls. Microbiology 1997, 143:2999-3006.
12. Calonje M., Mendoza C.G., Cabo A.P., Bernado D., Novaes-Ledieu M. Interaction between the mycoparasite Verticillium fungicola and the vegetative mycelial stage of Agaricus bisporus. Mycol. Res. 2000, 104:988-992.
13. Calonje M., Novaes-ledieu M., Bernado D., Ahrazem O., Mendoza C.G. Chemical components and their locations in the Verticillium fungicola cell wall. Can. J. Microbiol. 2000, 46:101-109.
14. Calvo-Bado L., Noble R., Challen M., Dobrovin-Pennington A., Elliot T. Sexuality and genetic identity in the Agaricus section Arvenses. Appl. Environ. Microbiol. 2000, 66:728-734.
15. Collopy P.D., Largeteau-Mamoun M.L., Romaine C.P., Royse D.J. Molecular phylogenetic analyses of Verticillium fungicola and related species causing dry bubble disease of the cultivated button mushroom, Agaricus bisporus. Phytopathology 2001, 91:905-912.
16. Collopy P.D., Amey R.C., Sergeant M.J., Challen M.P., Mills P.R., Foster G.D., Bailey A.M. The pmk1-like mitogen-activated protein kinase from Lecanicillium (Verticillium) fungicola is not required for virulence on Agaricus bisporus. Microbiology 2010, 156:1439-1447.
17. Costa A.M.S., Thomas D.J.I., Eastwood D., Cutler S.B., Bailey A.M., Foster G.D., Mills P.R., Challen M.P. Quantifiable down-regulation of endogenous genes in Agaricus bisporus mediated by expression of RNA hairpins. J. Microbiol. Biotechnol. 2009, 19:271-276.
18. Donaldson M.E., Saville B.J. Natural antisense in fungi. Mol. Microbiol. 2012, 84:405-417.
19. Dragt J.W., Geels F.P., Rutjens A.J., van Griensven L.J. Resistance in wild types of Agaricus bisporus to the mycoparasite Verticillium fungicola var. fungicola. Mushroom Sci. 1995, 14:679-683.
20. Dragt J.W., Geels F.P., De Bruijn W.C., van Griensven L.J.L.D. Intracellular infection of the cultivated mushroom Agaricus bisporus by the mycoparasite Verticillium fungicola var. fungicola. Mycol. Res. 1996, 100:1082-1086.
21. Eastwood D.C., Kingsnorth C.S., Jones H., Burton K.S. Genes with increased transcript levels following harvest of the sporophores of Agaricus bisporus have multiple physiological roles. Mycol. Res. 2001, 105:1223-1230.
22. Eastwood D.C., Challen M.P., Zhang C., Jenkins H., Henderson J., Burton K.S. Hairpin-mediated down regulation of the urea cycle enzyme argininosuccinate lyase in Agaricus bisporus. Mycol. Res. 2008, 112:708-716.
23. Fletcher J.T., White P.F., Gaze R.H. Mushrooms: Pest and Disease Control 1989, Intercept Athenaeum Press, UK, p. 174. second ed.
24. Foulongne-Oriol M., Rodier A., Rosseau T., Largeteau M.L., Savoie J.-M. Quantitative genetics to dissect the fungal-fungal interaction between Lecanicillium fungicola and the white button mushroom Agaricus bisporus. Fungal Biol. 2011, 115:421-431.
25. Foulongne-Oriol M., Dufourcq R., Spataro C., Devesse C., Broly A., Rodier A., Savoie J.M. Comparative linkage mapping in the white button mushroom Agaricus bisporus provides a foundation for breeding management. Curr. Genet. 2011, 57:39-50.
26. Foulongne-Oriol M., Rodier A., Rosseau T., Savoie J.-M. Quantitative trait locus mapping of yield related components and oligogenic control of the cap colour of the button mushroom Agaricus bisporus. Appl. Environ. Microbiol. 2012, 78:2423-2434.
27. Foulongne-Oriol M., Rodier A., Savoie J.-M. Relationship between yield components and partial resistance to Lecanicillium fungicola in the button mushroom, Agaricus bisporus, assessed by quantitative trait locus mapping. Appl. Environ. Microbiol. 2012, 78:2435-2442.
28. Grogan H.M., Gaze R.H. Fungicide resistance among Cladobotryium spp. - causal agent of cobweb disease of the edible mushroom Agaricus bisporus. Mycol. Res. 2000, 104:357-364.
29. Grogan, H.M., Keeling, C., Jukes, A.A., 2000. In vivo response of the mushroom pathogen Verticillium fungicola (dry bubble) to Prochloraz-manganese. In: Proceedings of the Brighton Crop Protection Conference: Pests and Diseases, BCPC, Farnham, Surrey, pp. 273-278.
30. Heneghan M.N., Costa A.M.S.B., Challen M.P., Mills P.R., Bailey A.M., Foster G.D. A comparison of methods for successful triggering of gene silencing in Coprinus cinereus. Mol. Biotechnol. 2007, 35:283-296.
31. Hwang C.S., Flaishman M.A., Kolattukudy P.E. Cloning of a gene expressed during appressorium formation by Colletotrichum gloeosporioides and a marked decrease in virulence by disruption of this gene. Plant Cell 1995, 7:183-193.
32. Joh J.H., Lee S.H., Lee J.S., Kim K.H., Jeong S.J., Youn W.H., Kim N.K., Son E.S., Cho Y.S., Yoo Y.B., et al. Isolation of genes expressed during the developmental stages of the oyster mushroom, Pleurotus ostreatus, using expressed sequence tags. FEMS Microbiol. Lett. 2007, 276:19-25.
33. Keith B., Dong X., Ausubel F.M., Fink G.R. Differential induction of 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase genes in Arabidopsis thaliana by wounding and pathogenic attack. Proc. Natl. Acad. Sci. USA 1991, 88:8821-8825.
34. Kema G.H., van der Lee T.A., Mendes O., Verstappen E.C., Lankhorst R.K., Sandbrink H., van der Burgt A., Zwiers L.H., Csukai M., Waalwijk C. Large-scale gene discovery in the septoria tritici blotch fungus Mycosphaerella graminicola with a focus on in planta expression. Mol. Plant-Microbe Interact. 2008, 21:1249-1260.
35. Keon J., Bailey A., Hargreaves J. A group of expressed cDNA sequences from the wheat fungal leaf blotch pathogen, Mycosphaerella graminicola (Septoria tritici). Fungal Genet. Biol. 2000, 29:118-133.
36. Largeteau M.L., Savoie J.-M. Microbially induced diseases of Agaricus bisporus: biochemical mechanisms and impact on commercial mushroom production. Appl. Microbiol. Biotechnol. 2010, 86:63-73.
37. Largeteau M.L., Baars J.J., Juarez del Carmen S., Regnault-Roger C., Savoie J.-M. Wild strains of Agaricus bisporus: a source of tolerance to dry bubble disease. Proceedings of the Genetics and Cellular Biology of Basidiomycetes VI, Pamplona, Spain 2005, 77-87. Universidad Publica de Navarra, Navarra, Spain. A.G. Pisabarro, L. Ramirez (Eds.).
38. Mills P.R., Fermor T., Muthumeenakshi S., Lincoln S. Cell wall degrading enzymes produced by Verticillium spp. and their relationship to infection in Agaricus bisporus. Mushroom Sci. 2000, 15:601-605.
39. Morin E., Kohler A., Baker A., Foulongne-Oriol M., Lombard V., et al. The genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche. Proc. Natl. Acad. Sci. USA 2012, 109:17501-17506.
40. North L.H., Wuest P.J. The infection process and symptom expression of Verticillium disease of Agaricus bisporus. Can. J. Plant Pathol. 1993, 15:74-80.
41. Oeser B., Beaussert F., Haarmann T., Lorenz N., Nathues E., Rolke Y., Scheffer J., Weiner J., Tudzynski P. Expressed sequence tags from the flower pathogen Claviceps purpurea. Mol. Plant Pathol. 2009, 10:665-684.
42. Portal O., Izquierdo Y., De Vleesschauwer D., Sanchez-Rodriguez A., Mendoza-Rodriguez M., Acosta-Suarez M., Ocana B., Jimenez E., Hofte E. Analysis of expressed sequence tags derived from a compatible Mycosphaerella fijiensis-banana interaction. Plant Cell Rep. 2011, 30:913-928.
43. Reithner B., Ibarra-Laclette E., Mach R.L., Herrera-Estrella A. Identification of mycoparasitism genes in Trichoderma atroviridae. Appl. Environ. Microbiol. 2011, 77:4361-4370.
44. Ruiz-Roldán C., Puerto-Galán L., Roa J., Castro A., Di Pietro A., Roncero M.I., Hera C. The Fusarium oxysporum sti35 gene functions in thiamine biosynthesis and oxidative stress response. Fungal Genet. Biol. 2008, 45:6-16.
45. Seidl V., Song L., Lindquist E., Gruber S., Koptchinskiy A., Zeilinger S., Schmoll M., Martínez P., Sun J., Grigoriev I., Herrera-Estrella A., Baker S.E., Kubicek C.P. Transcriptomic response of the mycoparasitic fungus Trichoderma atroviride to the presence of a fungal prey. BMC Genomics 2009, 10:567.
46. Soanes D.M., Talbot N.J. Comparative genomic analysis of phytopathogenic fungi using expressed sequence tag (EST) collections. Mol. Plant Pathol. 2006, 7:61-70.
47. Soanes D.M., Talbot N.J. Comparative genome analysis reveals an absence of Leucine-rich repeat pattern-recognition receptor proteins in the kingdom fungi. PLoS One 2010, 5(9):e12725.
48. Thomas D.J., Sergeant M.R., Costa A.M.S., Collopy P.D., Bailey A.M., Foster G.D., Mills P.R., Challen M.P. Molecular characterisation of the interaction between Agaricus bisporus and its mycopathogen Verticillium fungicola. Mushroom Sci. 2008, 17:123-134.
49. Van den Wymelenberg A., Gaskell J., Mozuch M., BonDurant S.S., Sabat G., Ralph J., Skyba O., Mansfield S.D., Blanchette R.A., Grigoriev I.V., Kersten P.J., Cullen D. Significant alteration of gene expression in wood decay fungi Postia placenta and Phanerochaete chrysosporium by plant species. Appl. Environ. Microbiol. 2011, 77:4499-4507.
50. Xu J., Kerrigan R.W., Callac P., Horgen P.A., Anderson J.B. Genetic structure of natural populations of Agaricus bisporus, the commercial button mushroom. J. Hered. 1997, 88:482-488.
51. Zare R., Gams W. A revision of Verticillium section Prostrata. VI. The genera Lecanicillium and Simplicillium gen. Nov. Nova Hedwigia 2001, 73:1-50.
52. Zare R., Gams W. A revision of the Verticillium fungicola species complex and its affinity with the genus Lecanicillium. Mycol. Res. 2008, 112:811-824.