Isolation of genes expressed during the developmental stages of the oyster mushroom, Pleurotus ostreatus, using expressed sequence tags

FEMS Microbiology Letters

Volumn 276, Issue 1, 2007, Pages 19-25

  Joh, Joong Ho ^a   Lee, Seung Ho ^b   Lee, Jin Sung ^c,d   Kim, Ki Hwan ^c   Jeong, Sung Ja ^b   Youn, Woong Han ^b   Kim, Nam Kuk ^a   Son, Eun Suk ^a   Cho, Yong Sup ^a   Yoo, Young Bok ^b   Lee, Chang Soo ^a   Kim, Beom Gi ^b  

^a Konkuk University   (South Korea)

^b National Institute of Animal Science   (South Korea)

^c BioCore Co Ltd   (South Korea)

^d Hanseo University   (South Korea)

Author keywords

Expressed sequence tags; Fruiting body development; Oyster mushroom; Pleurotus ostreatus

Indexed keywords

ARTICLE; BASIDIOMYCETES; BASIDIOSPORE; BIOCHEMISTRY; DATA BASE; DEVELOPMENTAL STAGE; FRUIT DEVELOPMENT; FRUITING BODY; GENE CONTROL; GENE EXPRESSION; GENE ISOLATION; GENOME; MYCELIAL GROWTH; NONHUMAN; PLEUROTUS OSTREATUS; PRIORITY JOURNAL; REDUNDANCY ANALYSIS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS; SEQUENCE TAGGED SITE;

DNA, FUNGAL; EXPRESSED SEQUENCE TAGS; FRUITING BODIES, FUNGAL; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, FUNGAL; GENE LIBRARY; GENES, FUNGAL; MYCELIUM; PLEUROTUS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, FUNGAL; RNA, MESSENGER; SPORES, FUNGAL;

BASIDIOMYCOTA; PLEUROTUS OSTREATUS;

EID: 35448964286     PISSN: 03781097     EISSN: 15746968     Source Type: Journal    
DOI: 10.1111/j.1574-6968.2007.00879.x     Document Type: Article

References (23)

1. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller M Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acid Res 25:3389 3402.
2. Asgeirsdottir SA, de Vries OM Wessels JG (1998) Identification of three differentially expressed hydrophobins in Pleurotus ostreatus (oyster mushroom). Microbiology 144:2961 2969.
3. De Groot PW, Schaap PJ, Van Griensven LJ Visser J (1997) Isolation of developmentally regulated genes from the edible mushroom Agaricus bisporus. Microbiology 143:1993 2001.
4. Fernandez Esprinar MT Labarère J (1997) Cloning and sequencing of Aa-Pri1 gene specifically expressed during fruiting initiation in the edible mushroom Agrocybe aegerita, and analysis of the predicted amino-acid sequence. Curr Genet 32:420 424.
5. Guettler S, Jackson EN, Lucchese SA, Honaas L, Green A, Hittinger CT, Tian Y, Lilly WW Gathman AC (2003) ESTs from the basidiomycete Schizophyllum commune grown on nitrogen-replete and nitrogen-limited media. Fungal Genet Biol 39:191 198.
6. Hirano T, Sato T Enei H (2004) Isolation of genes specifically expressed in the fruitbody of the edible basidiomycete Lentinula edodes. Biosci Biotechnol Biochem 68:468 472.
7. Hwang DM, Dempsey AA, Lee CY Liew CC (2000) Identification of differentially expressed genes in cardiac hypertrophy by analysis of expressed sequence tags. Genomics 66:1 14.
8. James TY, Liou SR Vilgalys R (2004) The genetic structure and diversity of the A and B mating-type genes from the tropical oyster mushroom, Pleurotus djamor. Fungal Genet Biol 41:813 825.
9. Joh JH, Kim BG, Kong WS, Yoo YB, Kim NK, Park HR, Cho BG Lee CS (2004) Cloning and developmental expression of a metzincin family metalloprotease cDNA from oyster mushroom Pleurotus ostreatus. FEMS Microbiol Lett 239:57 62.
10. Kothe E (1999) Mating types and pheromone recognition in the homobasidiomycetes in Schixophyllum commune. Fungal Genet Biol 27:146 152.
11. Kues U (2000) Life history and developmental processes in the basidiomycetes Coprinus cinereus. Microbiol Mol Biol Rev 64:316 353.
12. Kues U Liu Y (2000) Fruiting body production in basidiomycetes. Appl Microbiol Biotechnol 54:469 478.
13. Kupfer DM, Reece CA, Clifton SW, Roe BA Prade RA (1997) Multicellular ascomyceteous fungal genomes contain more than 8000 genes. Fung Genet Biol 21:364 372.
14. Larraya L, Penas MM, Perez G, Santos C, Ritter E, Pisabarro AG Ramirez L (1999) Identification of incompatibility alleles and characterisation of molecular markers genetically linked to the A incompatibility locus in the white rot fungus Pleurotus ostreatus. Curr Genet 34:486 493.
15. Larraya LM, Perez G, Iribarren I, Blanco JA, Alfonso M, Pisabarro AG Ramirez L (2001) Relationship between monokaryotic growth rate and mating type in the edible basidiomycete Pleurotus ostreatus. Appl Environ Microbiol 67:3385 3390.
16. Larraya LM, Idareta E, Arana D, Ritter E, Pisabarro AG Ramirez L (2002) Quantitative trait loci controlling vegetative growth rate in the edible basidiomycete Pleurotus ostreatus. Appl Environ Microbiol 68:1109 1114.
17. Lee SS, Hong SW, Kim SH Kim BC (2001) Several genes expressed during morphogenesis of Lentinula edodes (ImHyup-1). Mycobiology 29:135 141.
18. Lee SH, Kim BG, Kim KJ et al 2002) Comparative analysis of sequences expressed during the liquid-cultured mycelia and fruit body stages of Pleurotus ostreatus. Fungal Genet Biol 35:115 134.
19. Leung GS, Zhang M, Xie WJ Kwan HS (2000) Identification by RNA fingerprinting of genes differentially expressed during the development of the basidiomycete Lentinula edodes. Mol Gen Genet 2000 262:977 990.
20. Nelson MA, Kang S, Braun EL et al 1997) Expressed sequences from conidial, mycelial, and sexual stages of Neurospora crassa. Fungal Genet Biol 21:348 363.
21. Ospina-Giraldo MD, Collopy PD, Romaine CP Royse DJ (2000) Classification of sequences expressed during the primordial and basidiome stages of the cultivated mushroom Agaricus bisporus. Fungal Genet Biol 29:81 94.
22. Penas MM, Rust B, Larraya LM, Ramirez L Pisabarro AG (2002) Differentially regulated, vegetative-mycelium-specific hydrophobins of the edible basidiomycete Pleurotus ostreatus. Appl Environ Microbiol 68:3891 3898.
23. Qutob D, Hraber PT, Sobral BWS Gijzen M (2000) Comparative analysis of expressed sequences in Phytophthora sojae. Plant Physiol 123:243 253.