메뉴 건너뛰기




Volumn 10, Issue 5, 2013, Pages 708-715

RcsB-BglJ-mediated activation of Cascade operon does not induce the maturation of CRISPR RNAs in E. coli K12

Author keywords

Cas protein; Cascade; CRISPR; H NS; LeuO; Transcription regulation

Indexed keywords

CELLULAR APOPTOSIS SUSCEPTIBILITY PROTEIN; CRISPR RNA; PCAS PROTEIN; RNA; UNCLASSIFIED DRUG; BACTERIAL RNA; BGLJ PROTEIN, E COLI; CRISPR ASSOCIATED PROTEIN; ESCHERICHIA COLI PROTEIN; LEUO PROTEIN, E COLI; RCSB PROTEIN, E COLI; RNA BINDING PROTEIN; TRANSACTIVATOR PROTEIN; TRANSCRIPTION FACTOR;

EID: 84879029930     PISSN: 15476286     EISSN: 15558584     Source Type: Journal    
DOI: 10.4161/rna.23765     Document Type: Article
Times cited : (9)

References (37)
  • 1
    • 34047118522 scopus 로고    scopus 로고
    • CRISPR provides acquired resistance against viruses in prokaryotes
    • PMID:17379808
    • Barrangou R, Fremaux C, Deveau H, Richards M, Boyaval P, Moineau S, et al. CRISPR provides acquired resistance against viruses in prokaryotes. Science 2007; 315:1709-12; PMID:17379808; http://dx.doi.org/10.1126/science.1138140.
    • (2007) Science , vol.315 , pp. 1709-1712
    • Barrangou, R.1    Fremaux, C.2    Deveau, H.3    Richards, M.4    Boyaval, P.5    Moineau, S.6
  • 2
    • 23844505202 scopus 로고    scopus 로고
    • Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin
    • PMID:16079334
    • Bolotin A, Quinquis B, Sorokin A, Ehrlich SD. Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin. Microbiology 2005; 151:2551-61; PMID:16079334; http://dx.doi.org/10. 1099/mic.0.28048-0.
    • (2005) Microbiology , vol.151 , pp. 2551-2561
    • Bolotin, A.1    Quinquis, B.2    Sorokin, A.3    Ehrlich, S.D.4
  • 3
    • 16444385662 scopus 로고    scopus 로고
    • Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements
    • PMID:15791728
    • Mojica FJ, Díez-Villaseñor C, García-Martínez J, Soria E. Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements. J Mol Evol 2005; 60:174-82; PMID:15791728; http://dx.doi.org/10.1007/s00239-004-0046-3.
    • (2005) J Mol Evol , vol.60 , pp. 174-182
    • Mojica, F.J.1    Díez-Villaseñor, C.2    García-Martínez, J.3    Soria, E.4
  • 4
    • 68249102788 scopus 로고    scopus 로고
    • CRISPR-based adaptive and heritable immunity in prokaryotes
    • PMID:19646880
    • van der Oost J, Jore MM, Westra ER, Lundgren M, Brouns SJ. CRISPR-based adaptive and heritable immunity in prokaryotes. Trends Biochem Sci 2009; 34:401-7; PMID:19646880; http://dx.doi.org/10.1016/j.tibs.2009.05.002.
    • (2009) Trends Biochem Sci , vol.34 , pp. 401-407
    • Van Der Oost, J.1    Jore, M.M.2    Westra, E.R.3    Lundgren, M.4    Brouns, S.J.5
  • 5
    • 84870180587 scopus 로고    scopus 로고
    • The CRISPRs, they are a-changin': How prokaryotes generate adaptive immunity
    • PMID:23145983
    • Westra ER, Swarts DC, Staals RH, Jore MM, Brouns SJ, van der Oost J. The CRISPRs, they are a-changin': how prokaryotes generate adaptive immunity. Annu Rev Genet 2012; 46:311-39; PMID:23145983; http://dx.doi.org/10.1146/annurev- genet-110711-155447.
    • (2012) Annu Rev Genet , vol.46 , pp. 311-339
    • Westra, E.R.1    Swarts, D.C.2    Staals, R.H.3    Jore, M.M.4    Brouns, S.J.5    Van Der Oost, J.6
  • 6
    • 84864864464 scopus 로고    scopus 로고
    • Molecular memory of prior infections activates the CRISPR/Cas adaptive bacterial immunity system
    • PMID:22781758
    • Datsenko KA, Pougach K, Tikhonov A, Wanner BL, Severinov K, Semenova E. Molecular memory of prior infections activates the CRISPR/Cas adaptive bacterial immunity system. Nat Commun 2012; 3:945; PMID:22781758; http://dx.doi.org/10. 1038/ncomms1937.
    • (2012) Nat Commun , vol.3 , pp. 945
    • Datsenko, K.A.1    Pougach, K.2    Tikhonov, A.3    Wanner, B.L.4    Severinov, K.5    Semenova, E.6
  • 7
    • 84860433123 scopus 로고    scopus 로고
    • CRISPR interference directs strand specific spacer acquisition
    • PMID:22558257
    • Swarts DC, Mosterd C, van Passel MW, Brouns SJ. CRISPR interference directs strand specific spacer acquisition. PLoS One 2012; 7:e35888; PMID:22558257; http://dx.doi.org/10.1371/journal.pone.0035888.
    • (2012) PLoS One , vol.7
    • Swarts, D.C.1    Mosterd, C.2    Van Passel, M.W.3    Brouns, S.J.4
  • 8
    • 84861639567 scopus 로고    scopus 로고
    • Proteins and DNA elements essential for the CRISPR adaptation process in Escherichia coli
    • PMID:22402487
    • Yosef I, Goren MG, Qimron U. Proteins and DNA elements essential for the CRISPR adaptation process in Escherichia coli. Nucleic Acids Res 2012; 40:5569-76; PMID:22402487; http://dx.doi.org/10.1093/nar/gks216.
    • (2012) Nucleic Acids Res , vol.40 , pp. 5569-5576
    • Yosef, I.1    Goren, M.G.2    Qimron, U.3
  • 9
    • 84866313681 scopus 로고    scopus 로고
    • Experimental definition of a clustered regularly interspaced short palindromic duplicon in Escherichia coli
    • PMID:22771574
    • Goren MG, Yosef I, Auster O, Qimron U. Experimental definition of a clustered regularly interspaced short palindromic duplicon in Escherichia coli. J Mol Biol 2012; 423:14-6; PMID:22771574; http://dx.doi.org/10.1016/j.jmb.2012. 06.037.
    • (2012) J Mol Biol , vol.423 , pp. 14-16
    • Goren, M.G.1    Yosef, I.2    Auster, O.3    Qimron, U.4
  • 12
    • 77956628107 scopus 로고    scopus 로고
    • Transcription, processing and function of CRISPR cassettes in Escherichia coli
    • PMID:20624226
    • Pougach K, Semenova E, Bogdanova E, Datsenko KA, Djordjevic M, Wanner BL, et al. Transcription, processing and function of CRISPR cassettes in Escherichia coli. Mol Microbiol 2010; 77:1367-79; PMID:20624226; http://dx.doi.org/10.1111/j.1365-2958.2010.07265.x.
    • (2010) Mol Microbiol , vol.77 , pp. 1367-1379
    • Pougach, K.1    Semenova, E.2    Bogdanova, E.3    Datsenko, K.A.4    Djordjevic, M.5    Wanner, B.L.6
  • 13
    • 77949398275 scopus 로고    scopus 로고
    • Identification and characterization of E. coli CRISPR-cas promoters and their silencing by H-NS
    • PMID:20132443
    • Pul U, Wurm R, Arslan Z, Geissen R, Hofmann N, Wagner R. Identification and characterization of E. coli CRISPR-cas promoters and their silencing by H-NS. Mol Microbiol 2010; 75:1495-512; PMID:20132443; http://dx.doi.org/10.1111/ j.1365-2958.2010.07073.x.
    • (2010) Mol Microbiol , vol.75 , pp. 1495-1512
    • Pul, U.1    Wurm, R.2    Arslan, Z.3    Geissen, R.4    Hofmann, N.5    Wagner, R.6
  • 14
    • 49649114086 scopus 로고    scopus 로고
    • Small CRISPR RNAs guide antiviral defense in prokaryotes
    • PMID:18703739
    • Brouns SJ, Jore MM, Lundgren M, Westra ER, Slijkhuis RJ, Snijders AP, et al. Small CRISPR RNAs guide antiviral defense in prokaryotes. Science 2008; 321:960-4; PMID:18703739; http://dx.doi.org/10.1126/science.1159689.
    • (2008) Science , vol.321 , pp. 960-964
    • Brouns, S.J.1    Jore, M.M.2    Lundgren, M.3    Westra, E.R.4    Slijkhuis, R.J.5    Snijders, A.P.6
  • 16
    • 79959963663 scopus 로고    scopus 로고
    • Interference by clustered regularly interspaced short palindromic repeat (CRISPR) RNA is governed by a seed sequence
    • PMID:21646539
    • Semenova E, Jore MM, Datsenko KA, Semenova A, Westra ER, Wanner B, et al. Interference by clustered regularly interspaced short palindromic repeat (CRISPR) RNA is governed by a seed sequence. Proc Natl Acad Sci USA 2011; 108:10098-103; PMID:21646539; http://dx.doi.org/10.1073/pnas.1104144108.
    • (2011) Proc Natl Acad Sci USA , vol.108 , pp. 10098-10103
    • Semenova, E.1    Jore, M.M.2    Datsenko, K.A.3    Semenova, A.4    Westra, E.R.5    Wanner, B.6
  • 17
    • 84861996069 scopus 로고    scopus 로고
    • CRISPR immunity relies on the consecutive binding and degradation of negatively supercoiled invader DNA by Cascade and Cas3
    • PMID:22521689
    • Westra ER, van Erp PB, Künne T, Wong SP, Staals RH, Seegers CL, et al. CRISPR immunity relies on the consecutive binding and degradation of negatively supercoiled invader DNA by Cascade and Cas3. Mol Cell 2012; 46:595-605; PMID:22521689; http://dx.doi.org/10.1016/j.molcel.2012.03.018.
    • (2012) Mol Cell , vol.46 , pp. 595-605
    • Westra, E.R.1    Van Erp, P.B.2    Künne, T.3    Wong, S.P.4    Staals, R.H.5    Seegers, C.L.6
  • 18
    • 84870357797 scopus 로고    scopus 로고
    • Antibiotic resistance plasmids spread among natural isolates of Escherichia coli in spite of CRISPR elements
    • PMID:23059972
    • Touchon M, Charpentier S, Pognard D, Picard B, Arlet G, Rocha EP, et al. Antibiotic resistance plasmids spread among natural isolates of Escherichia coli in spite of CRISPR elements. Microbiology 2012; 158:2997-3004; PMID:23059972; http://dx.doi.org/10.1099/mic.0.060814-0.
    • (2012) Microbiology , vol.158 , pp. 2997-3004
    • Touchon, M.1    Charpentier, S.2    Pognard, D.3    Picard, B.4    Arlet, G.5    Rocha, E.P.6
  • 19
    • 79956154321 scopus 로고    scopus 로고
    • CRISPR distribution within the Escherichia coli species is not suggestive of immunity-associated diversifying selection
    • PMID:21421763
    • Touchon M, Charpentier S, Clermont O, Rocha EP, Denamur E, Branger C. CRISPR distribution within the Escherichia coli species is not suggestive of immunity-associated diversifying selection. J Bacteriol 2011; 193:2460-7; PMID:21421763; http://dx.doi.org/10.1128/JB.01307-10.
    • (2011) J Bacteriol , vol.193 , pp. 2460-2467
    • Touchon, M.1    Charpentier, S.2    Clermont, O.3    Rocha, E.P.4    Denamur, E.5    Branger, C.6
  • 20
    • 78649342032 scopus 로고    scopus 로고
    • The Escherichia coli CRISPR system protects from ë lysogenization, lysogens, and prophage induction
    • PMID:20889749
    • Edgar R, Qimron U. The Escherichia coli CRISPR system protects from ë lysogenization, lysogens, and prophage induction. J Bacteriol 2010; 192:6291-4; PMID:20889749; http://dx.doi.org/10.1128/JB.00644-10.
    • (2010) J Bacteriol , vol.192 , pp. 6291-6294
    • Edgar, R.1    Qimron, U.2
  • 21
    • 77956621546 scopus 로고    scopus 로고
    • H-NS-mediated repression of CRISPR-based immunity in Escherichia coli K12 can be relieved by the transcription activator LeuO
    • PMID:20659289
    • Westra ER, Pul U, Heidrich N, Jore MM, Lundgren M, Stratmann T, et al. H-NS-mediated repression of CRISPR-based immunity in Escherichia coli K12 can be relieved by the transcription activator LeuO. Mol Microbiol 2010; 77:1380-93; PMID:20659289; http://dx.doi.org/10.1111/j.1365-2958.2010.07315.x.
    • (2010) Mol Microbiol , vol.77 , pp. 1380-1393
    • Westra, E.R.1    Pul, U.2    Heidrich, N.3    Jore, M.M.4    Lundgren, M.5    Stratmann, T.6
  • 22
    • 77956624244 scopus 로고    scopus 로고
    • The on-off switch of CRISPR immunity against phages in Escherichia coli
    • PMID:20860086
    • Mojica FJ, Díez-Villaseñor C. The on-off switch of CRISPR immunity against phages in Escherichia coli. Mol Microbiol 2010; 77:1341-5; PMID:20860086; http://dx.doi.org/10.1111/j.1365-2958.2010.07326.x.
    • (2010) Mol Microbiol , vol.77 , pp. 1341-1345
    • Mojica, F.J.1    Díez-Villaseñor, C.2
  • 23
    • 0036066806 scopus 로고    scopus 로고
    • The baeSR two-component regulatory system activates transcription of the yegMNOB (mdtABCD) transporter gene cluster in Escherichia coli and increases its resistance to novobiocin and deoxycholate
    • PMID:12107134
    • Baranova N, Nikaido H. The baeSR two-component regulatory system activates transcription of the yegMNOB (mdtABCD) transporter gene cluster in Escherichia coli and increases its resistance to novobiocin and deoxycholate. J Bacteriol 2002; 184:4168-76; PMID:12107134; http://dx.doi.org/10.1128/JB.184.15. 4168-4176.2002.
    • (2002) J Bacteriol , vol.184 , pp. 4168-4176
    • Baranova, N.1    Nikaido, H.2
  • 24
    • 78751680634 scopus 로고    scopus 로고
    • Envelope stress is a trigger of CRISPR RNA-mediated DNA silencing in Escherichia coli
    • PMID:21255106
    • Perez-Rodriguez R, Haitjema C, Huang Q, Nam KH, Bernardis S, Ke A, et al. Envelope stress is a trigger of CRISPR RNA-mediated DNA silencing in Escherichia coli. Mol Microbiol 2011; 79:584-99; PMID:21255106; http://dx.doi.org/10.1111/j.1365-2958.2010.07482.x.
    • (2011) Mol Microbiol , vol.79 , pp. 584-599
    • Perez-Rodriguez, R.1    Haitjema, C.2    Huang, Q.3    Nam, K.H.4    Bernardis, S.5    Ke, A.6
  • 25
    • 78751685291 scopus 로고    scopus 로고
    • Identifying your enemies - Could envelope stress trigger microbial immunity?
    • PMID:21255103
    • Raivio T. Identifying your enemies - could envelope stress trigger microbial immunity? Mol Microbiol 2011; 79:557-61; PMID:21255103; http://dx.doi.org/10.1111/j.1365-2958.2010.07485.x.
    • (2011) Mol Microbiol , vol.79 , pp. 557-561
    • Raivio, T.1
  • 26
    • 84858276082 scopus 로고    scopus 로고
    • RcsB-BglJ activates the Escherichia coli leuO gene, encoding an H-NS antagonist and pleiotropic regulator of virulence determinants
    • PMID:22295907
    • Stratmann T, Pul U, Wurm R, Wagner R, Schnetz K. RcsB-BglJ activates the Escherichia coli leuO gene, encoding an H-NS antagonist and pleiotropic regulator of virulence determinants. Mol Microbiol 2012; 83:1109-23; PMID:22295907; http://dx.doi.org/10.1111/j.1365-2958.2012.07993.x.
    • (2012) Mol Microbiol , vol.83 , pp. 1109-1123
    • Stratmann, T.1    Pul, U.2    Wurm, R.3    Wagner, R.4    Schnetz, K.5
  • 27
    • 78649664707 scopus 로고    scopus 로고
    • BglJ-RcsB heterodimers relieve repression of the Escherichia coli bgl operon by H-NS
    • PMID:20952573
    • Venkatesh GR, Kembou Koungni FC, Paukner A, Stratmann T, Blissenbach B, Schnetz K. BglJ-RcsB heterodimers relieve repression of the Escherichia coli bgl operon by H-NS. J Bacteriol 2010; 192:6456-64; PMID:20952573; http://dx.doi.org/10.1128/JB.00807-10.
    • (2010) J Bacteriol , vol.192 , pp. 6456-6464
    • Venkatesh, G.R.1    Kembou Koungni, F.C.2    Paukner, A.3    Stratmann, T.4    Blissenbach, B.5    Schnetz, K.6
  • 28
    • 27144518215 scopus 로고    scopus 로고
    • Independent regulation of H-NS-mediated silencing of the bgl operon at two levels: Upstream by BglJ and LeuO and downstream by DnaKJ
    • PMID:16207917
    • Madhusudan S, Paukner A, Klingen Y, Schnetz K. Independent regulation of H-NS-mediated silencing of the bgl operon at two levels: upstream by BglJ and LeuO and downstream by DnaKJ. Microbiology 2005; 151:3349-59; PMID:16207917; http://dx.doi.org/10.1099/mic.0.28080-0.
    • (2005) Microbiology , vol.151 , pp. 3349-3359
    • Madhusudan, S.1    Paukner, A.2    Klingen, Y.3    Schnetz, K.4
  • 29
    • 84864369363 scopus 로고    scopus 로고
    • CRISPR transcript processing: A mechanism for generating a large number of small interfering RNAs
    • PMID:22849651
    • Djordjevic M, Djordjevic M, Severinov K. CRISPR transcript processing: a mechanism for generating a large number of small interfering RNAs. Biol Direct 2012; 7:24; PMID:22849651; http://dx.doi.org/10.1186/1745-6150-7-24.
    • (2012) Biol Direct , vol.7 , pp. 24
    • Djordjevic, M.1    Djordjevic, M.2    Severinov, K.3
  • 30
    • 80053169737 scopus 로고    scopus 로고
    • Structures of the RNA-guided surveillance complex from a bacterial immune system
    • PMID:21938068
    • Wiedenheft B, Lander GC, Zhou K, Jore MM, Brouns SJ, van der Oost J, et al. Structures of the RNA-guided surveillance complex from a bacterial immune system. Nature 2011; 477:486-9; PMID:21938068; http://dx.doi.org/10.1038/ nature10402.
    • (2011) Nature , vol.477 , pp. 486-489
    • Wiedenheft, B.1    Lander, G.C.2    Zhou, K.3    Jore, M.M.4    Brouns, S.J.5    Van Der Oost, J.6
  • 31
    • 84861632698 scopus 로고    scopus 로고
    • Phage-induced expression of CRISPR-associated proteins is revealed by shotgun proteomics in Streptococcus thermophilus
    • PMID:22666452
    • Young JC, Dill BD, Pan C, Hettich RL, Banfield JF, Shah M, et al. Phage-induced expression of CRISPR-associated proteins is revealed by shotgun proteomics in Streptococcus thermophilus. PLoS One 2012; 7:e38077; PMID:22666452; http://dx.doi.org/10.1371/journal.pone.0038077.
    • (2012) PLoS One , vol.7
    • Young, J.C.1    Dill, B.D.2    Pan, C.3    Hettich, R.L.4    Banfield, J.F.5    Shah, M.6
  • 32
    • 73149087453 scopus 로고    scopus 로고
    • Transcription profile of Thermus thermophilus CRISPR systems after phage infection
    • PMID:19891975
    • Agari Y, Sakamoto K, Tamakoshi M, Oshima T, Kuramitsu S, Shinkai A. Transcription profile of Thermus thermophilus CRISPR systems after phage infection. J Mol Biol 2010; 395:270-81; PMID:19891975; http://dx.doi.org/10. 1016/j.jmb.2009.10.057.
    • (2010) J Mol Biol , vol.395 , pp. 270-281
    • Agari, Y.1    Sakamoto, K.2    Tamakoshi, M.3    Oshima, T.4    Kuramitsu, S.5    Shinkai, A.6
  • 33
    • 79953250082 scopus 로고    scopus 로고
    • CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III
    • PMID:21455174
    • Deltcheva E, Chylinski K, Sharma CM, Gonzales K, Chao Y, Pirzada ZA, et al. CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III. Nature 2011; 471:602-7; PMID:21455174; http://dx.doi.org/10.1038/nature09886.
    • (2011) Nature , vol.471 , pp. 602-607
    • Deltcheva, E.1    Chylinski, K.2    Sharma, C.M.3    Gonzales, K.4    Chao, Y.5    Pirzada, Z.A.6
  • 34
    • 84869997748 scopus 로고    scopus 로고
    • Target motifs affecting natural immunity by a constitutive CRISPR-Cas system in Escherichia coli
    • PMID:23189210
    • Almendros C, Guzmán NM, Díez-Villaseñor C, García-Martínez J, Mojica FJ. Target motifs affecting natural immunity by a constitutive CRISPR-Cas system in Escherichia coli. PLoS One 2012; 7:e50797; PMID:23189210; http://dx.doi.org/10.1371/journal.pone.0050797.
    • (2012) PLoS One , vol.7
    • Almendros, C.1    Guzmán, N.M.2    Díez-Villaseñor, C.3    García-Martínez, J.4    Mojica, F.J.5
  • 35
    • 27644482393 scopus 로고    scopus 로고
    • Lost in translation: The influence of ribosomes on bacterial mRNA decay
    • PMID:16264189
    • Deana A, Belasco JG. Lost in translation: the influence of ribosomes on bacterial mRNA decay. Genes Dev 2005; 19:2526-33; PMID:16264189; http://dx.doi.org/10.1101/gad.1348805.
    • (2005) Genes Dev , vol.19 , pp. 2526-2533
    • Deana, A.1    Belasco, J.G.2
  • 36
    • 84055178649 scopus 로고    scopus 로고
    • High-temperature protein G is essential for activity of the Escherichia coli clustered regularly interspaced short palindromic repeats (CRISPR)/Cas system
    • PMID:22114197
    • Yosef I, Goren MG, Kiro R, Edgar R, Qimron U. High-temperature protein G is essential for activity of the Escherichia coli clustered regularly interspaced short palindromic repeats (CRISPR)/Cas system. Proc Natl Acad Sci USA 2011; 108:20136-41; PMID:22114197; http://dx.doi.org/10.1073/pnas. 1113519108.
    • (2011) Proc Natl Acad Sci USA , vol.108 , pp. 20136-20141
    • Yosef, I.1    Goren, M.G.2    Kiro, R.3    Edgar, R.4    Qimron, U.5
  • 37
    • 0031970775 scopus 로고    scopus 로고
    • Effects of the Escherichia coli DNA-binding protein H-NS on rRNA synthesis in vivo
    • PMID:9632265
    • Afflerbach H, Schröder O, Wagner R. Effects of the Escherichia coli DNA-binding protein H-NS on rRNA synthesis in vivo. Mol Microbiol 1998; 28:641-53; PMID:9632265; http://dx.doi.org/10.1046/j.1365-2958.1998.00829.x.
    • (1998) Mol Microbiol , vol.28 , pp. 641-653
    • Afflerbach, H.1    Schröder, O.2    Wagner, R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.