메뉴 건너뛰기




Volumn 4, Issue 6, 2013, Pages 595-600

SimAdapt: An individual-based genetic model for simulating landscape management impacts on populations

Author keywords

Adaptation; Ecology; Forward time; Land use; netlogo; Spatially explicit

Indexed keywords


EID: 84878932518     PISSN: None     EISSN: 2041210X     Source Type: Journal    
DOI: 10.1111/2041-210X.12041     Document Type: Article
Times cited : (30)

References (32)
  • 1
    • 79551664558 scopus 로고    scopus 로고
    • Simulation modelling in landscape genetics: on the need to go further
    • Balkenhol, N. & Landguth, E. (2011) Simulation modelling in landscape genetics: on the need to go further. Molecular Ecology, 20, 667-670.
    • (2011) Molecular Ecology , vol.20 , pp. 667-670
    • Balkenhol, N.1    Landguth, E.2
  • 3
    • 80855132740 scopus 로고    scopus 로고
    • Modeling invasive species spread in complex landscapes: the case of potato moth in Ecuador
    • Crespo-Pérez, V., Rebaudo, F., Silvain, J.F. & Dangles, O. (2011) Modeling invasive species spread in complex landscapes: the case of potato moth in Ecuador. Landscape Ecology, 26, 1447-1461.
    • (2011) Landscape Ecology , vol.26 , pp. 1447-1461
    • Crespo-Pérez, V.1    Rebaudo, F.2    Silvain, J.F.3    Dangles, O.4
  • 5
    • 33748762488 scopus 로고    scopus 로고
    • Computer programs for population genetics data analysis: a survival guide
    • Excoffier, L. & Heckel, G. (2006) Computer programs for population genetics data analysis: a survival guide. Nature Reviews Genetics, 7, 745-758.
    • (2006) Nature Reviews Genetics , vol.7 , pp. 745-758
    • Excoffier, L.1    Heckel, G.2
  • 6
    • 85007110786 scopus 로고    scopus 로고
    • Arlequin ver. 3.0: an integrated software package for population genetics data analysis
    • Excoffier, L., Laval, G. & Schneider, S. (2005) Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online, 1, 47-50.
    • (2005) Evolutionary Bioinformatics Online , vol.1 , pp. 47-50
    • Excoffier, L.1    Laval, G.2    Schneider, S.3
  • 7
    • 85007320774 scopus 로고
    • FSTAT (version 1.2): a computer program to calculate F-statistics
    • Goudet, J. (1995) FSTAT (version 1.2): a computer program to calculate F-statistics. Journal of Heredity, 86, 485-486.
    • (1995) Journal of Heredity , vol.86 , pp. 485-486
    • Goudet, J.1
  • 10
    • 33749823781 scopus 로고    scopus 로고
    • Nemo: an evolutionary and population genetics programming framework
    • Guillaume, F. & Rougemont, J. (2006) Nemo: an evolutionary and population genetics programming framework. Bioinformatics, 22, 2556-2557.
    • (2006) Bioinformatics , vol.22 , pp. 2556-2557
    • Guillaume, F.1    Rougemont, J.2
  • 13
    • 84855963371 scopus 로고    scopus 로고
    • Computer simulations: tools for population and evolutionary genetics
    • Hoban, S., Bertorelle, G. & Gaggiotti, O.E. (2012) Computer simulations: tools for population and evolutionary genetics. Nature Reviews Genetics, 13, 110-122.
    • (2012) Nature Reviews Genetics , vol.13 , pp. 110-122
    • Hoban, S.1    Bertorelle, G.2    Gaggiotti, O.E.3
  • 14
    • 73349087810 scopus 로고    scopus 로고
    • CDPOP: a spatially-explicit cost distance population genetics program
    • Landguth, E.L. & Cushman, S.A. (2010b) CDPOP: a spatially-explicit cost distance population genetics program. Molecular Ecology Resources, 10, 156-161.
    • (2010) Molecular Ecology Resources , vol.10 , pp. 156-161
    • Landguth, E.L.1    Cushman, S.A.2
  • 15
    • 77955728073 scopus 로고    scopus 로고
    • Relationships between migration rates and landscape resistance assessed using individual-based simulations
    • Landguth, E.L., Cushman, S.A., Murphy, M.A. & Luikarts, G. (2010) Relationships between migration rates and landscape resistance assessed using individual-based simulations. Molecular Ecology Resources, 10, 854-862.
    • (2010) Molecular Ecology Resources , vol.10 , pp. 854-862
    • Landguth, E.L.1    Cushman, S.A.2    Murphy, M.A.3    Luikarts, G.4
  • 16
    • 58949089101 scopus 로고    scopus 로고
    • IBDSim: a computer program to simulate genotypic data under isolation by distance
    • Leblois, R., Estoup, A. & Rousset, F. (2008) IBDSim: a computer program to simulate genotypic data under isolation by distance. Molecular Ecology Resources, 9, 107-109.
    • (2008) Molecular Ecology Resources , vol.9 , pp. 107-109
    • Leblois, R.1    Estoup, A.2    Rousset, F.3
  • 17
    • 26944455121 scopus 로고    scopus 로고
    • Analyzing beta diversity: partitioning the spatial variation of community composition data
    • Legendre, P., Borcard, D. & Peres-Neto, P.R. (2005) Analyzing beta diversity: partitioning the spatial variation of community composition data. Ecological Monographs, 75, 435-450.
    • (2005) Ecological Monographs , vol.75 , pp. 435-450
    • Legendre, P.1    Borcard, D.2    Peres-Neto, P.R.3
  • 18
    • 65549170295 scopus 로고    scopus 로고
    • Perspectives and challenges in landscape genetics
    • Manel, S. & Segelbacher, G. (2009) Perspectives and challenges in landscape genetics. Molecular Ecology, 18, 1821-1822.
    • (2009) Molecular Ecology , vol.18 , pp. 1821-1822
    • Manel, S.1    Segelbacher, G.2
  • 19
    • 46249111534 scopus 로고    scopus 로고
    • quantiNemo: an individual-based program to simulate quantitative traits with explicit genetic architecture in a dynamic metapopulation
    • Neuenschwander, S., Hospital, F. & Goudet, J. (2008) quantiNemo: an individual-based program to simulate quantitative traits with explicit genetic architecture in a dynamic metapopulation. Bioinformatics, 24, 1552-1553.
    • (2008) Bioinformatics , vol.24 , pp. 1552-1553
    • Neuenschwander, S.1    Hospital, F.2    Goudet, J.3
  • 20
    • 0013059825 scopus 로고
    • The general and logical theory of automata
    • ed. L.A. Jeffress) Wiley, New York.
    • von Neumann, J. (1948) The general and logical theory of automata. Cerebral Mechanisms in Behavior (ed. L.A. Jeffress ), pp. 1-41. Wiley, New York.
    • (1948) Cerebral Mechanisms in Behavior , pp. 1-41
    • von Neumann, J.1
  • 21
    • 84864280571 scopus 로고    scopus 로고
    • Adaptive landscape genetics: pitfalls and benefits
    • Parisod, C. & Holderegger, R. (2012) Adaptive landscape genetics: pitfalls and benefits. Molecular Ecology Resources, 21, 3644-3646.
    • (2012) Molecular Ecology Resources , vol.21 , pp. 3644-3646
    • Parisod, C.1    Holderegger, R.2
  • 23
    • 24644505748 scopus 로고    scopus 로고
    • simuPOP: a forward-time population genetics simulation environment
    • Peng, B. & Kimmel, M. (2005) simuPOP: a forward-time population genetics simulation environment. Bioinformatics, 21, 3686-3687.
    • (2005) Bioinformatics , vol.21 , pp. 3686-3687
    • Peng, B.1    Kimmel, M.2
  • 24
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • Pritchard, J.K., Stephens, M. & Donnelly, P. (2000) Inference of population structure using multilocus genotype data. Genetics, 155, 945-959.
    • (2000) Genetics , vol.155 , pp. 945-959
    • Pritchard, J.K.1    Stephens, M.2    Donnelly, P.3
  • 25
    • 84863304598 scopus 로고    scopus 로고
    • R Development Core Team, R Foundation for Statistical Computing, Vienna. URL
    • R Development Core Team (2012) R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna. URL http://www.r-project.org/
    • (2012) R: A Language and Environment for Statistical Computing
  • 27
    • 78449304078 scopus 로고    scopus 로고
    • SPLATCHE2: a spatially-explicit simulation framework for complex demography, genetic admixture and recombination
    • Ray, N., Currat, M., Foll, M. & Excoffier, L. (2010) SPLATCHE2: a spatially-explicit simulation framework for complex demography, genetic admixture and recombination. Bioinformatics, 26, 2993-2994.
    • (2010) Bioinformatics , vol.26 , pp. 2993-2994
    • Ray, N.1    Currat, M.2    Foll, M.3    Excoffier, L.4
  • 28
    • 36849080837 scopus 로고    scopus 로고
    • GENEPOP'007: a complete re-implementation of the genepop software for Windows and Linux
    • Rousset, F. (2008) GENEPOP'007: a complete re-implementation of the genepop software for Windows and Linux. Molecular Ecology Resources, 8, 103-106.
    • (2008) Molecular Ecology Resources , vol.8 , pp. 103-106
    • Rousset, F.1
  • 29
    • 84863881449 scopus 로고    scopus 로고
    • RNetLogo: an R package for running and exploring individual-based models implemented in NetLogo
    • Thiele, J.C., Kurth, W. & Grimm, V. (2012) RNetLogo: an R package for running and exploring individual-based models implemented in NetLogo. Methods in Ecology and Evolution, 3, 480-483.
    • (2012) Methods in Ecology and Evolution , vol.3 , pp. 480-483
    • Thiele, J.C.1    Kurth, W.2    Grimm, V.3
  • 31
    • 0141877349 scopus 로고    scopus 로고
    • Center for Connected Learning and Computer-Based Modeling, Northwestern University, Evanston, Illinois, USA. URL
    • Wilensky, U. (1999) NetLogo. Center for Connected Learning and Computer-Based Modeling, Northwestern University, Evanston, Illinois, USA. URL: http://ccl.northwestern.edu/netlogo/.
    • (1999) NetLogo
    • Wilensky, U.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.