-
1
-
-
79952259978
-
Has the Earth's sixth mass extinction already arrived?
-
Barnosky AD, Matzke N, Tomiya S, Wogan GOU, Swartz B, et al. (2011) Has the Earth's sixth mass extinction already arrived? Nature 471: 51-57.
-
(2011)
Nature
, vol.471
, pp. 51-57
-
-
Barnosky, A.D.1
Matzke, N.2
Tomiya, S.3
Wogan, G.O.U.4
Swartz, B.5
-
2
-
-
78650171292
-
Scenarios for global biodiversity in the 21st century
-
Pereira HM, Leadley PW, Proenca V, Alkemade R, Scharlemann JPW, et al. (2010) Scenarios for global biodiversity in the 21st century. Science 330: 1496-1501.
-
(2010)
Science
, vol.330
, pp. 1496-1501
-
-
Pereira, H.M.1
Leadley, P.W.2
Proenca, V.3
Alkemade, R.4
Scharlemann, J.P.W.5
-
3
-
-
40149098704
-
Shifting baselines, local impacts, and global change on coral reefs
-
10.1371/journal.pbio.0060054
-
Knowlton N, Jackson JBC, (2008) Shifting baselines, local impacts, and global change on coral reefs. Plos Biol 6(2): e54 Doi: 10.1371/journal.pbio.0060054.
-
(2008)
Plos Biol
, vol.6
, Issue.2
-
-
Knowlton, N.1
Jackson, J.B.C.2
-
4
-
-
77957811324
-
A census of marine biodiversity knowledge, resources, and future challenges
-
Costello MJ, Coll M, Danovaro R, Halpin P, Ojaveer H, et al. (2010) A census of marine biodiversity knowledge, resources, and future challenges. Plos One 5: e12110.
-
(2010)
Plos One
, vol.5
-
-
Costello, M.J.1
Coll, M.2
Danovaro, R.3
Halpin, P.4
Ojaveer, H.5
-
6
-
-
80052310753
-
How many species are there on earth and in the ocean?
-
Mora C, Tittensor DP, Adl S, Simpson AGB, Worm B, (2011) How many species are there on earth and in the ocean? Plos Biol 9: e1001127.
-
(2011)
Plos Biol
, vol.9
-
-
Mora, C.1
Tittensor, D.P.2
Adl, S.3
Simpson, A.G.B.4
Worm, B.5
-
7
-
-
77951929876
-
Ultrasequencing of the meiofaunal biosphere: Practice, pitfalls and promises
-
Creer S, Fonseca VG, Porazinska DL, Giblin-Davis RM, Sung W, et al. (2010) Ultrasequencing of the meiofaunal biosphere: Practice, pitfalls and promises. Mol Ecol 19: 4-20.
-
(2010)
Mol Ecol
, vol.19
, pp. 4-20
-
-
Creer, S.1
Fonseca, V.G.2
Porazinska, D.L.3
Giblin-Davis, R.M.4
Sung, W.5
-
8
-
-
33747073504
-
Microbial diversity in the deep sea and the underexplored "rare biosphere"
-
Sogin ML, Morrison HG, Huber JA, Mark Welch D, Huse SM, et al. (2006) Microbial diversity in the deep sea and the underexplored "rare biosphere". Proc Natl Acad Sci USA 103: 12115-12120.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 12115-12120
-
-
Sogin, M.L.1
Morrison, H.G.2
Huber, J.A.3
Mark Welch, D.4
Huse, S.M.5
-
10
-
-
68149178616
-
A method for studying protistan diversity using massively parallel sequencing of V9 hypervariable regions of small-subunit ribosomal RNA genes
-
Amaral-Zettler LA, McCliment EA, Ducklow HW, Huse SM, (2009) A method for studying protistan diversity using massively parallel sequencing of V9 hypervariable regions of small-subunit ribosomal RNA genes. Plos One 4: e6372.
-
(2009)
Plos One
, vol.4
-
-
Amaral-Zettler, L.A.1
McCliment, E.A.2
Ducklow, H.W.3
Huse, S.M.4
-
11
-
-
79953695045
-
Eukaryotic richness in the abyss: Insights from pyrotag sequencing
-
Pawlowski J, Christen R, Lecroq B, Bachar D, Shahbazkia HR, et al. (2011) Eukaryotic richness in the abyss: Insights from pyrotag sequencing. Plos One 6: e18169.
-
(2011)
Plos One
, vol.6
-
-
Pawlowski, J.1
Christen, R.2
Lecroq, B.3
Bachar, D.4
Shahbazkia, H.R.5
-
12
-
-
84880321899
-
Second-generation environmental sequencing unmasks marine metazoan biodiversity
-
Fonseca VG, Carvalho GR, Sung W, Johnson HF, Power DM, et al. (2010) Second-generation environmental sequencing unmasks marine metazoan biodiversity. Nat Commun 1: 98.
-
(2010)
Nat Commun
, vol.1
, pp. 98
-
-
Fonseca, V.G.1
Carvalho, G.R.2
Sung, W.3
Johnson, H.F.4
Power, D.M.5
-
13
-
-
84858617141
-
Sequencing our way towards understanding global eukaryotic biodiversity
-
Bik HM, Porazinska DL, Creer S, Caporaso JG, Knight R, et al. (2012) Sequencing our way towards understanding global eukaryotic biodiversity. Trends Ecol Evol 27: 233-243.
-
(2012)
Trends Ecol Evol
, vol.27
, pp. 233-243
-
-
Bik, H.M.1
Porazinska, D.L.2
Creer, S.3
Caporaso, J.G.4
Knight, R.5
-
14
-
-
70349915703
-
Evaluating high-throughput sequencing as a method for metagenomic analysis of nematode diversity
-
Porazinska DL, Giblin-Davis RM, Faller L, Farmerie W, Kanzaki N, et al. (2009) Evaluating high-throughput sequencing as a method for metagenomic analysis of nematode diversity. Mol Ecol Resour 9: 1439-1450.
-
(2009)
Mol Ecol Resour
, vol.9
, pp. 1439-1450
-
-
Porazinska, D.L.1
Giblin-Davis, R.M.2
Faller, L.3
Farmerie, W.4
Kanzaki, N.5
-
15
-
-
77954025874
-
Reproducibility of read numbers in high-throughput sequencing analysis of nematode community composition and structure
-
Porazinska DL, Sung W, Giblin-Davis RM, Thomas WK, (2010) Reproducibility of read numbers in high-throughput sequencing analysis of nematode community composition and structure. Mol Ecol Resour 10: 666-676.
-
(2010)
Mol Ecol Resour
, vol.10
, pp. 666-676
-
-
Porazinska, D.L.1
Sung, W.2
Giblin-Davis, R.M.3
Thomas, W.K.4
-
16
-
-
79954587407
-
Environmental barcoding: a next-generation sequencing approach for biomonitoring applications using river benthos
-
Hajibabaei M, Shokralla S, Zhou X, Singer GAC, Baird DJ, (2011) Environmental barcoding: a next-generation sequencing approach for biomonitoring applications using river benthos. Plos ONE 6(4): e17497.
-
(2011)
Plos ONE
, vol.6
, Issue.4
-
-
Hajibabaei, M.1
Shokralla, S.2
Zhou, X.3
Singer, G.A.C.4
Baird, D.J.5
-
17
-
-
84866642478
-
Biodiversity soup: metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring
-
Yu DW, Ji Y, Emerson BC, Wang X, Ye C, et al. (2012) Biodiversity soup: metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring. Methods Mol Evol 3: 613-623.
-
(2012)
Methods Mol Evol
, vol.3
, pp. 613-623
-
-
Yu, D.W.1
Ji, Y.2
Emerson, B.C.3
Wang, X.4
Ye, C.5
-
18
-
-
70350527180
-
Conserved fragments in bacterial 16S rRNA genes and primer design for 16S ribosomal DNA amplicons in metagenomic studies
-
Wang Y, Qian PY, (2009) Conserved fragments in bacterial 16S rRNA genes and primer design for 16S ribosomal DNA amplicons in metagenomic studies. Plos ONE 4(10): e7401.
-
(2009)
Plos ONE
, vol.4
, Issue.10
-
-
Wang, Y.1
Qian, P.Y.2
-
19
-
-
0026300584
-
Ribosomal DNA: Molecular evolution and phylogenetic inference
-
Hillis DM, Dixon MT, (1991) Ribosomal DNA: Molecular evolution and phylogenetic inference. Q Rev Biol 66: 411-453.
-
(1991)
Q Rev Biol
, vol.66
, pp. 411-453
-
-
Hillis, D.M.1
Dixon, M.T.2
-
20
-
-
0028176239
-
Comparison of molecular and paleontological data in diatoms suggests a major gap in the fossil record
-
Philippe H, Sörhannus U, Baroin A, Perasso R, Gasse F, et al. (1994) Comparison of molecular and paleontological data in diatoms suggests a major gap in the fossil record. J Evol Biol 7: 247-265.
-
(1994)
J Evol Biol
, vol.7
, pp. 247-265
-
-
Philippe, H.1
Sörhannus, U.2
Baroin, A.3
Perasso, R.4
Gasse, F.5
-
21
-
-
0028006470
-
Structure of the large ribosomal subunit RNA of Phytophthora megasperma, and phylogeny of the oomycetes
-
Van der Auwera G, Chapelle S, De Wachter R, (1994) Structure of the large ribosomal subunit RNA of Phytophthora megasperma, and phylogeny of the oomycetes. FEBS Lett 338: 133-136.
-
(1994)
FEBS Lett
, vol.338
, pp. 133-136
-
-
van der Auwera, G.1
Chapelle, S.2
de Wachter, R.3
-
22
-
-
33750442556
-
Characteristics of the nuclear (18S, 5.8S, 28S and 5S) and mitochondrial (12S and 16S) rRNA genes of Apis mellifera (Insecta: Hymenoptera): structure, organization, and retrotransposable elements
-
Gillespie JJ, Johnston JS, Cannone JJ, Gutell RR, (2006) Characteristics of the nuclear (18S, 5.8S, 28S and 5S) and mitochondrial (12S and 16S) rRNA genes of Apis mellifera (Insecta: Hymenoptera): structure, organization, and retrotransposable elements. Insec Mol Bio 15: 657-686.
-
(2006)
Insec Mol Bio
, vol.15
, pp. 657-686
-
-
Gillespie, J.J.1
Johnston, J.S.2
Cannone, J.J.3
Gutell, R.R.4
-
23
-
-
84859864632
-
PCR primers for metazoan mitochondrial 12S ribosomal DNA sequences
-
10.1371/journal.pone.0035887
-
Machida RJ, Kwesin M, Knowlton N, (2012) PCR primers for metazoan mitochondrial 12S ribosomal DNA sequences. PLoS ONE 7(4): e35887 doi:10.1371/journal.pone.0035887.
-
(2012)
PLoS ONE
, vol.7
, Issue.4
-
-
Machida, R.J.1
Kwesin, M.2
Knowlton, N.3
-
24
-
-
33744997660
-
Evolutionary rate, divergence dates, and the performance of mitochondrial genes in bayesian phylogenetic analysis
-
Mueller RL, (2006) Evolutionary rate, divergence dates, and the performance of mitochondrial genes in bayesian phylogenetic analysis. Syst Biol 55: 289-300.
-
(2006)
Syst Biol
, vol.55
, pp. 289-300
-
-
Mueller, R.L.1
-
25
-
-
77956396642
-
Dissimilarity of species and forms of planktonic Neocalanus copepods using mitochondrial COI, 12S, nuclear ITS, and 28S gene sequences
-
10.1371/journal.pone.0010278
-
Machida RJ, Tsuda A, (2010) Dissimilarity of species and forms of planktonic Neocalanus copepods using mitochondrial COI, 12S, nuclear ITS, and 28S gene sequences. PLoS ONE 5(4): e10278 doi:10.1371/journal.pone.0010278.
-
(2010)
PLoS ONE
, vol.5
, Issue.4
-
-
Machida, R.J.1
Tsuda, A.2
-
26
-
-
37549027613
-
Silva: A comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
-
Pruesse E, Quast C, Knittel K, Fuchs B, Ludwig W, et al. (2007) Silva: A comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nuc Acids Res 35: 7188-7196.
-
(2007)
Nuc Acids Res
, vol.35
, pp. 7188-7196
-
-
Pruesse, E.1
Quast, C.2
Knittel, K.3
Fuchs, B.4
Ludwig, W.5
-
27
-
-
34248149943
-
Mol Ecol Notes
-
Ratnasingham S, Hebert PDN, (2007) BOLD: The Barcode of Life Data System (www.barcodinglife.org). Mol Ecol Notes. 7: 355-364 DOI: 10.1111/j.1471-8286.2006.01678.x.
-
(2007)
, vol.7
, pp. 355-364
-
-
Ratnasingham, S.1
Hebert, P.D.N.2
-
28
-
-
72949107142
-
Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities
-
Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, et al. (2009) Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 75: 7537-7541.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 7537-7541
-
-
Schloss, P.D.1
Westcott, S.L.2
Ryabin, T.3
Hall, J.R.4
Hartmann, M.5
-
29
-
-
45949107473
-
Recent developments in the MAFFT multiple sequence alignment program
-
Katoh K, Toh H, (2008) Recent developments in the MAFFT multiple sequence alignment program. Brief Bioinform 9: 286-298.
-
(2008)
Brief Bioinform
, vol.9
, pp. 286-298
-
-
Katoh, K.1
Toh, H.2
|