Intersection of selenoproteins and kinase signalling

Biochimica et Biophysica Acta - Proteins and Proteomics

Volumn 1834, Issue 7, 2013, Pages 1279-1284

  Lenart, Anna ^b   Pawłowski, Krzysztof ^a  

^a WARSAW UNIVERSITY OF LIFE SCIENCES   (Poland)

^b NENCKI INSTITUTE OF EXPERIMENTAL BIOLOGY   (Poland)

Author keywords

Kinome; Oxidoreductase; Protein structure prediction; Remote homology; Selenoprotein

Indexed keywords

OXIDOREDUCTASE; PHOSPHOTRANSFERASE; SELENOPROTEIN; SELENOPROTEIN N; SELENOPROTEIN O; THIOREDOXIN; UNCLASSIFIED DRUG;

BIOLOGY; CARBOXY TERMINAL SEQUENCE; GENE MUTATION; HUMAN; MEDICAL LITERATURE; MOLECULAR MECHANICS; MYOPATHY; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN FUNCTION; PROTEIN STRUCTURE; REGULATORY MECHANISM; REVIEW; SIGNAL TRANSDUCTION;

BINDING SITES; HUMANS; MODELS, MOLECULAR; MUSCULAR DISEASES; MUTATION; PROTEIN KINASES; PROTEIN STRUCTURE, TERTIARY; SELENOPROTEINS; SIGNAL TRANSDUCTION; THIOREDOXINS;

EID: 84878887603     PISSN: 15709639     EISSN: 18781454     Source Type: Journal    
DOI: 10.1016/j.bbapap.2013.03.019     Document Type: Review

References (56)

1. G.V. Kryukov, S. Castellano, S.V. Novoselov, A.V. Lobanov, O. Zehtab, R. Guigo, and V.N. Gladyshev Characterization of mammalian selenoproteomes Science 300 2003 1439 1443 (Pubitemid 36638165)
2. M. Mariotti, P.G. Ridge, Y. Zhang, A.V. Lobanov, T.H. Pringle, R. Guigo, D.L. Hatfield, and V.N. Gladyshev Composition and evolution of the vertebrate and mammalian selenoproteomes PLoS One 7 2012 e33066
3. E.S. Arner Selenoproteins - what unique properties can arise with selenocysteine in place of cysteine? Exp. Cell Res. 316 2010 1296 1303
4. R.J. Hondal, S.M. Marino, and V.N. Gladyshev Selenocysteine in thiol/disulfide-like exchange reactions Antioxid. Redox Signal. 18 2013 1675 1689
5. S.K. Hanks, A.M. Quinn, and T. Hunter The protein kinase family: conserved features and deduced phylogeny of the catalytic domains Science 241 1988 42 52
6. N. Kannan, S.S. Taylor, Y. Zhai, J.C. Venter, and G. Manning Structural and functional diversity of the microbial kinome PLoS Biol. 5 2007 e17
7. G. Manning, D.B. Whyte, R. Martinez, T. Hunter, and S. Sudarsanam The protein kinase complement of the human genome Science 298 2002 1912 1934 (Pubitemid 35425239)
8. A.M. Edwards, R. Isserlin, G.D. Bader, S.V. Frye, T.M. Willson, and F.H. Yu Too many roads not taken Nature 470 2011 163 165
9. V.S. Tagliabracci, J.L. Engel, J. Wen, S.E. Wiley, C.A. Worby, L.N. Kinch, J. Xiao, N.V. Grishin, and J.E. Dixon Secreted kinase phosphorylates extracellular proteins that regulate biomineralization Science 336 2012 1150 1153 (36)
10. M. Dudkiewicz, A. Lenart, and K. Pawłowski A novel predicted calcium-regulated kinase family implicated in neurological disorders Nat. Preced. 2012 (in press) (npre.2012.7015.1)
11. J.F. Collet, and J. Messens Structure, function, and mechanism of thioredoxin proteins Antioxid. Redox Signal. 13 2010 1205 1216
12. H.J. Atkinson, and P.C. Babbitt An atlas of the thioredoxin fold class reveals the complexity of function-enabling adaptations PLoS Comput. Biol. 5 2009 e1000541
13. B. Moghadaszadeh, and A.H. Beggs Selenoproteins and their impact on human health through diverse physiological pathways Physiology (Bethesda) 21 2006 307 315 (Pubitemid 44511758)
14. A. Sengupta, B.A. Carlson, J.A. Weaver, S.V. Novoselov, D.E. Fomenko, V.N. Gladyshev, and D.L. Hatfield A functional link between housekeeping selenoproteins and phase II enzymes Biochem. J. 413 2008 151 161 (Pubitemid 351946871)
15. D.L. Hatfield, M.H. Yoo, B.A. Carlson, and V.N. Gladyshev Selenoproteins that function in cancer prevention and promotion Biochim. Biophys. Acta 1790 2009 1541 1545
16. L. Rychlewski, L. Jaroszewski, W. Li, and A. Godzik Comparison of sequence profiles. Strategies for structural predictions using sequence information Protein Sci. 9 2000 232 241 (Pubitemid 30126996)
17. J. Soding, A. Biegert, and A.N. Lupas The HHpred interactive server for protein homology detection and structure prediction Nucleic Acids Res. 33 2005 W244 W248
18. S.R. Eddy Accelerated profile HMM searches PLoS Comput. Biol. 7 2011 e1002195
19. M. Punta, P.C. Coggill, R.Y. Eberhardt, J. Mistry, J. Tate, C. Boursnell, N. Pang, K. Forslund, G. Ceric, J. Clements, A. Heger, L. Holm, E.L. Sonnhammer, S.R. Eddy, A. Bateman, and R.D. Finn The Pfam protein families database Nucleic Acids Res. 40 2012 D290 D301
20. G.V. Kryukov, V.M. Kryukov, and V.N. Gladyshev New mammalian selenocysteine-containing proteins identified with an algorithm that searches for selenocysteine insertion sequence elements J. Biol. Chem. 274 1999 33888 33897 (Pubitemid 129511716)
21. A. Sali, and T.L. Blundell Comparative protein modelling by satisfaction of spatial restraints J. Mol. Biol. 234 1993 779 815 (Pubitemid 24007801)
22. J.L. Fink, and N. Hamilton DomainDraw: a macromolecular feature drawing program In Silico Biol. 7 2007 145 150 (Pubitemid 47335229)
23. S. Arbogast, M. Beuvin, B. Fraysse, H. Zhou, F. Muntoni, and A. Ferreiro Oxidative stress in SEPN1-related myopathy: from pathophysiology to treatment Ann. Neurol. 65 2009 677 686
24. H.P. Zhang, T. Nagashima, F. Hayashi, and S. Yokoyama Solution Structure of the UAS Domain of Human UBX Domain-containing Protein 7 PDB Database: 2DLX 2006
25. G. Alexandru, J. Graumann, G.T. Smith, N.J. Kolawa, R. Fang, and R.J. Deshaies UBXD7 binds multiple ubiquitin ligases and implicates p97 in HIF1alpha turnover Cell 134 2008 804 816
26. S. Bandau, A. Knebel, Z.O. Gage, N.T. Wood, and G. Alexandru UBXN7 docks on neddylated cullin complexes using its UIM motif and causes HIF1alpha accumulation BMC Biol. 10 2012 36
27. A. Lescure, D. Gautheret, P. Carbon, and A. Krol Novel selenoproteins identified in silico and in vivo by using a conserved RNA structural motif J. Biol. Chem. 274 1999 38147 38154 (Pubitemid 30026887)
28. M. Ingelman, V. Bianchi, and H. Eklund The three-dimensional structure of flavodoxin reductase from Escherichia coli at 1.7 Å resolution J. Mol. Biol. 268 1997 147 157 (Pubitemid 27192685)
29. O. Dym, and D. Eisenberg Sequence-structure analysis of FAD-containing proteins Protein Sci. 10 2001 1712 1728 (Pubitemid 32848768)
30. L. Fieseler, M. Horn, M. Wagner, and U. Hentschel Discovery of the novel candidate phylum "Poribacteria" in marine sponges Appl. Environ. Microbiol. 70 2004 3724 3732 (Pubitemid 38745923)
31. A. Siegl, J. Kamke, T. Hochmuth, J. Piel, M. Richter, C. Liang, T. Dandekar, and U. Hentschel Single-cell genomics reveals the lifestyle of Poribacteria, a candidate phylum symbiotically associated with marine sponges ISME J. 5 2011 61 70
32. M.J. Jurynec, R. Xia, J.J. Mackrill, D. Gunther, T. Crawford, K.M. Flanigan, J.J. Abramson, M.T. Howard, and D.J. Grunwald Selenoprotein N is required for ryanodine receptor calcium release channel activity in human and zebrafish muscle Proc. Natl. Acad. Sci. U. S. A. 105 2008 12485 12490
33. J.A. Fuerst Intracellular compartmentation in planctomycetes Annu. Rev. Microbiol. 59 2005 299 328 (Pubitemid 41507434)
34. S. Arbogast, and A. Ferreiro Selenoproteins and protection against oxidative stress: selenoprotein N as a novel player at the crossroads of redox signaling and calcium homeostasis Antioxid. Redox Signal. 12 2010 893 904
35. B. Moghadaszadeh, I. Desguerre, H. Topaloglu, F. Muntoni, S. Pavek, C. Sewry, M. Mayer, M. Fardeau, F.M. Tome, and P. Guicheney Identification of a new locus for a peculiar form of congenital muscular dystrophy with early rigidity of the spine, on chromosome 1p35-36 Am. J. Hum. Genet. 62 1998 1439 1445 (Pubitemid 28307113)
36. B. Moghadaszadeh, N. Petit, C. Jaillard, M. Brockington, S.Q. Roy, L. Merlini, N. Romero, B. Estournet, I. Desguerre, D. Chaigne, F. Muntoni, H. Topaloglu, and P. Guicheney Mutations in SEPN1 cause congenital muscular dystrophy with spinal rigidity and restrictive respiratory syndrome Nat. Genet. 29 2001 17 18 (Pubitemid 32801799)
37. A. Ferreiro, S. Quijano-Roy, C. Pichereau, B. Moghadaszadeh, N. Goemans, C. Bonnemann, H. Jungbluth, V. Straub, M. Villanova, J.P. Leroy, N.B. Romero, J.J. Martin, F. Muntoni, T. Voit, B. Estournet, P. Richard, M. Fardeau, and P. Guicheney Mutations of the selenoprotein N gene, which is implicated in rigid spine muscular dystrophy, cause the classical phenotype of multiminicore disease: reassessing the nosology of early-onset myopathies Am. J. Hum. Genet. 71 2002 739 749 (Pubitemid 135750508)
38. R. Cagliani, M.E. Fruguglietti, A. Berardinelli, M.G. D'Angelo, A. Prelle, S. Riva, L. Napoli, K. Gorni, S. Orcesi, C. Lamperti, A. Pichiecchio, E. Signaroldi, R. Tupler, F. Magri, A. Govoni, S. Corti, N. Bresolin, M. Moggio, and G.P. Comi New molecular findings in congenital myopathies due to selenoprotein N gene mutations J. Neurol. Sci. 300 2011 107 113
39. M. Scoto, S. Cirak, R. Mein, L. Feng, A.Y. Manzur, S. Robb, A.M. Childs, R.M. Quinlivan, H. Roper, D.H. Jones, C. Longman, G. Chow, M. Pane, M. Main, M.G. Hanna, K. Bushby, C. Sewry, S. Abbs, E. Mercuri, and F. Muntoni SEPN1-related myopathies: clinical course in a large cohort of patients Neurology 76 2011 2073 2078
40. M. Dudkiewicz, T. Szczepinska, M. Grynberg, and K. Pawlowski A novel protein kinase-like domain in a selenoprotein, widespread in the tree of life PLoS One 7 2012 e32138
41. M.Y. Galperin, and E.V. Koonin 'Conserved hypothetical' proteins: prioritization of targets for experimental study Nucleic Acids Res. 32 2004 5452 5463 (Pubitemid 39545662)
42. S. Quan, I. Schneider, J. Pan, A. Von Hacht, and J.C. Bardwell The CXXC motif is more than a redox rheostat J. Biol. Chem. 282 2007 28823 28833 (Pubitemid 47606028)
43. V.A. Shchedrina, S.V. Novoselov, M.Y. Malinouski, and V.N. Gladyshev Identification and characterization of a selenoprotein family containing a diselenide bond in a redox motif Proc. Natl. Acad. Sci. U. S. A. 104 2007 13919 13924 (Pubitemid 350003313)
44. J. Bolivar, I. Diaz, C. Iglesias, and M.M. Valdivia Molecular cloning of a zinc finger autoantigen transiently associated with interphase nucleolus and mitotic centromeres and midbodies. Orthologous proteins with nine CXXC motifs highly conserved from nematodes to humans J. Biol. Chem. 274 1999 36456 36464
45. H.O. Ishikawa, A. Xu, E. Ogura, G. Manning, and K.D. Irvine The Raine syndrome protein FAM20C is a golgi kinase that phosphorylates bio-mineralization proteins PLoS One 7 2012 e42988
46. K. Pawlowski, A. Muszewska, A. Lenart, T. Szczepinska, A. Godzik, and M. Grynberg A widespread peroxiredoxin-like domain present in tumor suppression- and progression-implicated proteins BMC Genomics 11 2010 590
47. R.E. Hansen, D. Roth, and J.R. Winther Quantifying the global cellular thiol-disulfide status Proc. Natl. Acad. Sci. U. S. A. 106 2009 422 427
48. A. Dikiy, S.V. Novoselov, D.E. Fomenko, A. Sengupta, B.A. Carlson, R.L. Cerny, K. Ginalski, N.V. Grishin, D.L. Hatfield, and V.N. Gladyshev SelT, SelW, SelH, and Rdx12: genomics and molecular insights into the functions of selenoproteins of a novel thioredoxin-like family Biochemistry 46 2007 6871 6882 (Pubitemid 46906416)
49. A.D. Ferguson, V.M. Labunskyy, D.E. Fomenko, D. Arac, Y. Chelliah, C.A. Amezcua, J. Rizo, V.N. Gladyshev, and J. Deisenhofer NMR structures of the selenoproteins Sep15 and SelM reveal redox activity of a new thioredoxin-like family J. Biol. Chem. 281 2006 3536 3543 (Pubitemid 43845970)
50. V.A. Shchedrina, R.A. Everley, Y. Zhang, S.P. Gygi, D.L. Hatfield, and V.N. Gladyshev Selenoprotein K binds multiprotein complexes and is involved in the regulation of endoplasmic reticulum homeostasis J. Biol. Chem. 286 2011 42937 42948
51. M.A. Kurowski, and J.M. Bujnicki GeneSilico protein structure prediction meta-server Nucleic Acids Res. 31 2003 3305 3307 (Pubitemid 37442145)
52. D.W. Huang, B.T. Sherman, and R.A. Lempicki Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources Nat. Protoc. 4 2009 44 57
53. D.W. Huang, B.T. Sherman, and R.A. Lempicki Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists Nucleic Acids Res. 37 2009 1 13
54. W.C. Hawkes, and Z. Alkan Delayed cell cycle progression in selenoprotein W-depleted cells is regulated by a mitogen-activated protein kinase kinase 4-p38/c-Jun NH2-terminal kinase-p53 pathway J. Biol. Chem. 287 2012 27371 27379
55. S.L. Mehta, N. Mendelev, S. Kumari, and P. Andy Li Overexpression of human selenoprotein H in neuronal cells enhances mitochondrial biogenesis and function through activation of pro tein kinase A, protein kinase B, and cyclic adenosine monophosphate response element-binding protein pathway Int. J. Biochem. Cell Biol. 45 2013 604 611
56. S.H. Choi, and H.Y. Kim Methionine sulfoxide reductase A regulates cell growth through the p53-p21 pathway Biochem. Biophys. Res. Commun. 416 2011 70 75