Verrucosispora fiedleri sp. nov., an actinomycete isolated from a fjord sediment which synthesizes proximicins

Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology

Volumn 103, Issue 3, 2013, Pages 493-502

  Goodfellow, Michael ^a   Brown, Roselyn ^a   Ahmed, Lina ^a   Pathom Aree, Wasu ^a   Bull, Alan T ^a,b   Jones, Amanda L ^a   Stach, James E M ^a   Zucchi, Tiago Domingues ^a   Zhang, Lixin ^c   Wang, Jian ^a,c  

^a NEWCASTLE UNIVERSITY   (United Kingdom)

^b UNIVERSITY OF KENT   (United Kingdom)

^c INSTITUTE OF MICROBIOLOGY   (China)

Author keywords

Actinomycetes; Marine sediment; Polyphasic taxonomy; Verrucosispora fiedleri

Indexed keywords

ANTIBIOTIC AGENT; PROXIMICIN; RNA 16S; UNCLASSIFIED DRUG;

ACTINOBACTERIA; ARTICLE; BACTERIAL STRAIN; BACTERIUM; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; CONTROLLED STUDY; DNA SEQUENCE; GENE FUNCTION; GENE IDENTIFICATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SEDIMENT; SEQUENCE ANALYSIS; STRAIN DIFFERENCE; TAXONOMIC IDENTIFICATION; VERRUCOSISPORA FIEDLERI; VERRUCOSISPORA GIFHORNENSIS; VERRUCOSISPORA MARIS; VERRUCOSISPORA QIUIAE;

BACTERIAL TYPING TECHNIQUES; CLUSTER ANALYSIS; DNA, BACTERIAL; DNA, RIBOSOMAL; ESTUARIES; GEOLOGIC SEDIMENTS; MICROMONOSPORACEAE; MOLECULAR SEQUENCE DATA; NORWAY; NUCLEIC ACID HYBRIDIZATION; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA;

ACTINOBACTERIA; ACTINOBACTERIA (CLASS); VERRUCOSISPORA; VERRUCOSISPORA GIFHORNENSIS;

EID: 84878884976     PISSN: 00036072     EISSN: 15729699     Source Type: Journal    
DOI: 10.1007/s10482-012-9831-y     Document Type: Article

References (33)

1. Bister B, Bishoff D, Ströbele M, Riedlinger J, Reicke A, Bull AT, Zähner H, Fiedler H-P, Süssmuth RD (2004) Abyssomicin C- a novel polycyclic antibiotic from a marine Verrucosispora strain as an inhibitor of the p-aminobenzoic acid/tetrahydrofolate biosynthesis pathway. Angew Chem Int Ed 43:2574-2576
2. Dai H-Q, Wang J, Xin Y-H, Pei G, Tang S-K, Ren B, Ward A, Ruan J-S, Li W-J, Zhang L-X (2010) Verrucosispora sediminis sp. nov., a cyclodipeptide- producing actinomycete from deep-sea sediment. Int J Syst Evol Microbiol 60:1807-1812
3. Felsenstein J (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17:368-376
4. Felsenstein J (1993) PHYLIP (Phylogenetic Inference Package), version 3.5c. Department of Genetics, University of Washington, Seattle
5. Fiedler H-P, Bruntner C, Riedlinger J, Bull AT, Knutsen G, Goodfellow M, Jones AL, Maldonado L, Pathom-aree W, Beil W, Schneider K, Keller S, Süssmuth RD (2008) Proximicin A, B and C, novel aminofuran antibiotic and anticancer compounds isolated from marine strains of the actinomycete Verrucosispora. J Antibiot 61:158-163
6. Gonzalez JM, Saiz-Jimenez C (2002) A fluorimetric method for the estimation of G+C mol % content in microorganisms by thermal denaturation temperature. Environ Microbiol 4:770-773
7. Gonzalez JM, Saiz-Jimenez C (2005) A simple fluorimetric method for the estimation of DNA-DNA relatedness between closely related microorganisms by thermal denaturation temperatures. Extremophiles 9:75-79
8. Goodfellow M, Stach JEM, Brown R, Bonda ANV, Jones AL, Mexson J, Fiedler H-P, Zucchi TD, Bull AT (2012) Verrucosispora maris sp. nov., a novel deep-sea actinomycete isolated from a marine sediment which produces abyssomicins. Antonie Van Leeuwenhoek 101:185-193
9. Keller S, Nicholson G, Drahl C, Sorensen E, Fiedler H-P, Sussmuth RD (2007a) Abyssomicins G and H and atrop-abyssomicin C from the marine Verrucosispora strain AB-18-032. J Antibiot 60:391-394
10. Keller S, Schadt HS, Ortel I (2007b) Action of atrop-abyssomicin C as an inhibitor of 4-amino-4-deoxychorismate synthase PabB. Angew Chem Int Ed 46:8254-8286
11. Kim B, Sahin N, Tan GYA, Zakrzewska-Czerwinska J, Goodfellow M (2002) Amycolatopsis eurytherma sp. nov., a thermophilic actinomycete isolated from soil. Int J Syst Evol Microbiol 52:889-894
12. Kluge AG, Farris FS (1969) Quantitative phyletics and the evolution of anurans. Syst Zool 18:1-32
13. Kuster E, Williams ST (1964) Selection of media for isolation of streptomycetes. Nature 202:928-929
14. Liao Z-L, Tang S-K, Guo L, Zhang Y-Q, Tian X-P, Jiang C-L, Xu L-H, Li W-J (2009) Verrucosispora lutea sp. nov., isolated from a mangrove sediment sample. Int J Syst Evol Microbiol 59:2269-2273
15. Minnikin DE, Alshamaony L, Goodfellow M (1975) Differentiation of Mycobacterium, Nocardia and related taxa by thin-layer-chromatographic analyses of whole-cell methanolysates. J Gen Microbiol 88:200-204
16. Minnikin DE, O'Donnell AG, Goodfellow M, Alderson G, Athalye M, Schaal A, Parlett JH (1984) An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2:233-241
17. O'Donnell AG, Falconer C, Goodfellow M, Ward AC, Williams E (1993) Biosystematics and diversity amongst novel carboxydotrophic actinomycetes. Antonie Van Leeuwenhoek 64:325-340
18. Rheims H, Schumann P, Rohde M, Stackebrandt E (1998) Verrucosispora gifhornensis gen. nov., sp. nov., a new member of the actinobacterial family Micromonosporaceae. Int J Syst Bacteriol 48:1119-1127
19. Riedlinger J, Reicke A, Krismer B, Zähner H, Bull AT, Maldonado LA, Ward AC, Goodfellow M, Bister B, Bischof D, Süssmuth RD, Fiedler H-P (2004) Abyssomicins, inhibitors of the para-aminobenzoic acid pathway produced by the marine Verrucosispora strain AB-18-032. J Antibiot 57:271-279
20. Roh H, Uguru GC, Ko H-J, Kim S, Kim B-Y, Goodfellow M, Bull AT, Kim K-H, Bibb MJ, Choi I-G, Stach JEM (2011) Genome sequence of the abyssomicin- and proximicin-producing marine actinomycete Verrucosispora maris AB-18-032. J Bacteriol 193:3391-3392
21. Saitou N, Nei M (1987) The neighbor-joining method: a new method for constructing phylogenetic trees. Mol Biol Evol 4:406-425
22. Sasser M (1990) Identification of bacteria by gas chromatography of cellular fatty acids. MIDI Technical Note 101. MIDI Inc, Newark
23. Schaal KP (1985) Identification of clinically significant actinomycetes and related bacteria using chemical techniques. In: Goodfellow M, Minnikin DE (eds) Chemical methods in bacterial systematics. Wiley, Chichester, pp 359-381
24. Schneider K, Keller S, Wolter FE, Roglin L, Beil W, Seitz O, Nicholson G, Bruntner C, Riedlinger J, Fiedler H-P, Sussmuth RD (2008) Proximicins A, B and C-antitumor furan analogues of netropsin from the marine actinomycete Verrucosispora induced up regulation of p53 and the cyclin kinase inhibitor p21. Angew Chem Int Ed 47:3258-3261
25. Shirai M, Okuda M, Motohashi K, Inoto M, Furihata K, Matsuo Y, Shizuri Y, Seto H (2010) Terpenoids produced by actinomycetes: isolation, structural elucidation and biosynthesis of new diterpenes: gifhornenolones A and B from Verrucosispora gifhornensis YM28-088. J Antibiot 63:245-250
26. Shirling EB, Gottlieb D (1966) Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16:313-340
27. Stackebrandt E (2012) Genus XVI. Verrucosispora Rheims, Schumann, Rohde, Stackebrandt, 1998. In: Goodfellow M, Kämpfer P, Busse H-J, Trujillo ME, Suzuki K-I, Ludwig W, Whitman WB (eds) Bergey's manual of systematic bacteriology. The Actinobacteria, Part B, vol 5, 2nd edn. Springer, New York, pp 1124-1127
28. Staneck JL, Roberts GD (1974) Simplified approach to identification of aerobic actinomycetes by thin-layer chromatography. Appl Microbiol 28:226-231
29. Uchida K, Kudo T, Suzuki KI, Nakase T (1999) A new rapid method of glycolate test by diethyl ether extraction, which is applicable to a small amount of bacterial cells of less than one milligram. J Gen Appl Microbiol 45:49-56
30. Wayne LG, Brenner DJ, Colwell RR et al (1987) International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37:463-464
31. Xi L, Zhang L, Ruan J, Huang Y (2012) Verrucosispora qiuiae sp. nov., isolated from mangrove swamp, and emended description of the genus Verrucosispora. Int J Syst Evol Microbiol 62:1564-1569
32. Xie Q, Hong K, Goodfellow M (2011) Genus-specific primers targeting the 16S rRNA gene for PCR detection of members of the genus Verrucosispora. Antonie Van Leeuwenhoek 100:117-128
33. Xie Q-Y, Lin H-P, Li L, Brown R, Goodfellow M, Deng Z, Hong K (2012) Verrucosispora wenchangensis sp. nov., isolated from mangrove soil. Antonie Van Leeuwenhoek 102:1-7