TherMos: Estimating protein-DNA binding energies from in vivo binding profiles

Nucleic Acids Research

Volumn 41, Issue 11, 2013, Pages 5555-5568

  Sun, Wenjie ^a   Hu, Xiaoming ^a   Lim, Michael H K ^a   Ng, Calista K L ^a,b   Choo, Siew Hua ^a   Castro, Diogo S ^c   Drechsel, Daniela ^c   Guillemot, François ^c   Kolatkar, Prasanna R ^a   Jauch, Ralf ^a,d   Prabhakar, Shyam ^a  

^a GENOME INSTITUTE OF SINGAPORE   (Singapore)

^b NANYANG TECHNOLOGICAL UNIVERSITY   (Singapore)

^c NATIONAL INSTITUTE FOR MEDICAL RESEARCH   (United Kingdom)

^d GUANGZHOU INSTITUTES OF BIOMEDICINE AND HEALTH   (China)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; KRUPPEL LIKE FACTOR 4; PROTEIN ESRRB; TRANSCRIPTION FACTOR; UNCLASSIFIED DRUG;

ACCURACY; ALGORITHM; ARTICLE; BINDING AFFINITY; BINDING ENERGY; BINDING KINETICS; CHROMATIN IMMUNOPRECIPITATION; CONTROLLED STUDY; DNA SEQUENCE; ENERGY; GENETIC PROCEDURES; IN VITRO STUDY; IN VIVO STUDY; INTERMETHOD COMPARISON; NUCLEOTIDE SEQUENCE; POSITION SPECIFIC BINDING ENERGY MATRIX; PRIORITY JOURNAL; PROTEIN DNA BINDING; STATISTICAL MODEL; THERMODYNAMIC MODELING OF CHIP SEQ; VALIDATION STUDY;

ALGORITHMS; ANIMALS; CHROMATIN IMMUNOPRECIPITATION; DNA-BINDING PROTEINS; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; KRUPPEL-LIKE TRANSCRIPTION FACTORS; MICE; MUTATION; PROTEIN BINDING; RECEPTORS, ESTROGEN; SEQUENCE ANALYSIS, DNA; THERMODYNAMICS; TRANSCRIPTION FACTORS;

EID: 84878882810     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkt250     Document Type: Article

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